Tan0005727 (gene) Snake gourd v1

Overview
NameTan0005727
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRNase H domain-containing protein
LocationLG02: 42283043 .. 42283324 (+)
RNA-Seq ExpressionTan0005727
SyntenyTan0005727
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAAGATGGAGAAGAGGGGAGAAGGAAGTGATACGATCTAATCGACCATTACAGTGGATCCCTCCAGTCAATGGTTGCCTGAAACTCAACACAGATGCAACACTTTCATCCGCTTCCAATGTCACTGGGTTGGGGGCAATAATAAGGGATTCTGAAGGGAAGATGATAGCGGCAAAGTCTGAAACAGTGAAGGGAAAAATGAATGTATTAGCTGCGGAGGCCTTTACGATAATCAAAGGGATAGAAATGGCGAAAGAGTTAGGGTTTAATCGGTTGTAG

mRNA sequence

ATGAGAAGATGGAGAAGAGGGGAGAAGGAAGTGATACGATCTAATCGACCATTACAGTGGATCCCTCCAGTCAATGGTTGCCTGAAACTCAACACAGATGCAACACTTTCATCCGCTTCCAATGTCACTGGGTTGGGGGCAATAATAAGGGATTCTGAAGGGAAGATGATAGCGGCAAAGTCTGAAACAGTGAAGGGAAAAATGAATGTATTAGCTGCGGAGGCCTTTACGATAATCAAAGGGATAGAAATGGCGAAAGAGTTAGGGTTTAATCGGTTGTAG

Coding sequence (CDS)

ATGAGAAGATGGAGAAGAGGGGAGAAGGAAGTGATACGATCTAATCGACCATTACAGTGGATCCCTCCAGTCAATGGTTGCCTGAAACTCAACACAGATGCAACACTTTCATCCGCTTCCAATGTCACTGGGTTGGGGGCAATAATAAGGGATTCTGAAGGGAAGATGATAGCGGCAAAGTCTGAAACAGTGAAGGGAAAAATGAATGTATTAGCTGCGGAGGCCTTTACGATAATCAAAGGGATAGAAATGGCGAAAGAGTTAGGGTTTAATCGGTTGTAG

Protein sequence

MRRWRRGEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFTIIKGIEMAKELGFNRL
Homology
BLAST of Tan0005727 vs. NCBI nr
Match: XP_031131899.1 (uncharacterized protein LOC116033287 [Ipomoea triloba])

HSP 1 Score: 73.6 bits (179), Expect = 1.0e-09
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 0

Query: 2   RRWRR----GEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMI 61
           R W++     +  ++ SN   QW PP++G LKLNT+  L  +S+V GLG II+D  G+ I
Sbjct: 35  RNWKQVNELSDTYILPSNVVDQWKPPIHGRLKLNTNVALDGSSSVMGLGWIIKDDAGRFI 94

Query: 62  AAKSETVKGKMNVLAAEAFTIIKGIEMAKELGF 91
           AAKSE++ G  NV  AEA +I + +   K LG+
Sbjct: 95  AAKSESIVGVFNVKEAEAVSIREALSWLKGLGY 127

BLAST of Tan0005727 vs. NCBI nr
Match: XP_031107819.1 (uncharacterized protein LOC116012428 [Ipomoea triloba])

HSP 1 Score: 65.5 bits (158), Expect = 2.8e-07
Identity = 29/80 (36.25%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 14  SNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAA 73
           S   ++W  P NG +KLNTDA++  A+NV G G ++RD +G+ +A+K+E++ G   +  A
Sbjct: 698 SGAAVRWRKPSNGRVKLNTDASIDEANNVMGFGWVMRDDDGRFLASKNESMNGVFTIKEA 757

Query: 74  EAFTIIKGIEMAKELGFNRL 94
           EA  + + +   K+ G  R+
Sbjct: 758 EAMCMREALSWLKDTGLGRV 777

BLAST of Tan0005727 vs. NCBI nr
Match: XP_030509082.1 (uncharacterized protein LOC115723746 [Cannabis sativa])

HSP 1 Score: 65.1 bits (157), Expect = 3.7e-07
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 18  LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFT 77
           L W PP  G LKLNTDA +S+  N TG G ++RD  GK++AA +    G+M    AE + 
Sbjct: 166 LAWEPPPVGTLKLNTDAAVSNHQNRTGGGVLVRDHTGKVLAATAFNRMGQMQSQVAEGWV 225

Query: 78  IIKGIEMAKELGFN 92
           +++G++ +++ GFN
Sbjct: 226 LLEGLKWSRDNGFN 239

BLAST of Tan0005727 vs. NCBI nr
Match: KAF4359769.1 (hypothetical protein F8388_008331 [Cannabis sativa])

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 5   RRGEKEVIRSNRP-LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSET 64
           +RG      S+R  L W PP  G LKLNTDA +SS  N TG GA++RD  GK+IAA +  
Sbjct: 478 KRGNHSQSTSDRDLLVWEPPPVGFLKLNTDAAISSHQNKTGGGALVRDHTGKIIAATAFN 537

Query: 65  VKGKMNVLAAEAFTIIKGIEMAKELGFN 92
             G+++  AAE + +++ ++  ++ G N
Sbjct: 538 RIGQLHPQAAEGWALLEALKWCQDKGIN 565

BLAST of Tan0005727 vs. NCBI nr
Match: KAF4362586.1 (hypothetical protein F8388_011413 [Cannabis sativa])

HSP 1 Score: 64.7 bits (156), Expect = 4.8e-07
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 5   RRGEKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETV 64
           RR + +       L W PP  G LKLNTDA +S+  N TG GA++RD  GK++AA +   
Sbjct: 329 RRTQTQSTTDLNLLAWEPPPVGTLKLNTDAAISTHQNRTGGGALVRDHTGKVLAATTFNR 388

Query: 65  KGKMNVLAAEAFTIIKGIEMAKELGFN 92
            G+M    AE + +++G++ +++ G N
Sbjct: 389 MGQMQPQVAEGWVLLEGLKWSRDNGLN 415

BLAST of Tan0005727 vs. ExPASy TrEMBL
Match: A0A803Q1A0 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.6e-08
Identity = 36/88 (40.91%), Postives = 57/88 (64.77%), Query Frame = 0

Query: 5   RRGEKEVIRSNRPLQ-WIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSET 64
           +RG++  + S+R LQ W PP  G LKLNTDA +SS  N TG GA++RD  GK++AA +  
Sbjct: 556 KRGKQTQLTSDRILQEWEPPPVGSLKLNTDAAISSRQNRTGGGALVRDHAGKVLAATAFN 615

Query: 65  VKGKMNVLAAEAFTIIKGIEMAKELGFN 92
             G+++  AAE + +++ ++   + G N
Sbjct: 616 RIGQLHPQAAEGWALLEALKWCYDKGIN 643

BLAST of Tan0005727 vs. ExPASy TrEMBL
Match: A0A803Q0L9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 8.0e-08
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 8    EKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGK 67
            + + I  +  L W PP  G LKL  DA +SS  N  G GAI+RDS G++IAA++ +  G+
Sbjct: 1272 QPQSITDHNNLTWEPPPMGTLKLTVDAAVSSHRNKIGGGAIVRDSTGRVIAARAFSRSGQ 1331

Query: 68   MNVLAAEAFTIIKGIEMAKELGFN 92
            M   AAE + +++G++ + E G N
Sbjct: 1332 MQPKAAEGWALLEGLKWSLENGIN 1355

BLAST of Tan0005727 vs. ExPASy TrEMBL
Match: A0A7J6GE83 (RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_016227 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 33/84 (39.29%), Postives = 52/84 (61.90%), Query Frame = 0

Query: 8  EKEVIRSNRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGK 67
          + + I  +  L+W PP  G LKLN D  +SS  N TG GAI+RDS G++IAA++ +   +
Sbjct: 2  QPQSITDHSNLKWEPPPMGTLKLNVDGAVSSHRNKTGGGAIVRDSTGRVIAARAFSRSRQ 61

Query: 68 MNVLAAEAFTIIKGIEMAKELGFN 92
          M    AE + +++G++ + E G N
Sbjct: 62 MQPKVAEGWALLEGLKWSFENGIN 85

BLAST of Tan0005727 vs. ExPASy TrEMBL
Match: A0A7J6EPY6 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008331 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 36/88 (40.91%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 5   RRGEKEVIRSNRP-LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSET 64
           +RG      S+R  L W PP  G LKLNTDA +SS  N TG GA++RD  GK+IAA +  
Sbjct: 478 KRGNHSQSTSDRDLLVWEPPPVGFLKLNTDAAISSHQNKTGGGALVRDHTGKIIAATAFN 537

Query: 65  VKGKMNVLAAEAFTIIKGIEMAKELGFN 92
             G+++  AAE + +++ ++  ++ G N
Sbjct: 538 RIGQLHPQAAEGWALLEALKWCQDKGIN 565

BLAST of Tan0005727 vs. ExPASy TrEMBL
Match: A0A803NTC1 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.3e-07
Identity = 33/74 (44.59%), Postives = 48/74 (64.86%), Query Frame = 0

Query: 18   LQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAEAFT 77
            L W PP+ G LKLN DA +SS  N TG G I+RD  GK+IAA + +  G+M   AAE + 
Sbjct: 1296 LAWKPPLVGTLKLNADAAVSSHQNKTGGGVIVRDHTGKVIAATTFSRVGQMQPKAAEGWV 1355

Query: 78   IIKGIEMAKELGFN 92
            + +G++ +++ G N
Sbjct: 1356 LWEGLKWSRDNGLN 1369

BLAST of Tan0005727 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 46.6 bits (109), Expect = 1.3e-05
Identity = 26/79 (32.91%), Postives = 42/79 (53.16%), Query Frame = 0

Query: 15  NRPLQWIPPVNGCLKLNTDATLSSASNVTGLGAIIRDSEGKMIAAKSETVKGKMNVLAAE 74
           +R  +W PP    LK N DA+    + V+GLG I+R+S+G +I       +G+M    AE
Sbjct: 100 SRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIECGMGKFQGRMTTEEAE 159

Query: 75  AFTIIKGIEMAKELGFNRL 94
             T+I  I+ +   G  ++
Sbjct: 160 CSTLIWAIQASYGFGHKKV 178

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_031131899.11.0e-0943.01uncharacterized protein LOC116033287 [Ipomoea triloba][more]
XP_031107819.12.8e-0736.25uncharacterized protein LOC116012428 [Ipomoea triloba][more]
XP_030509082.13.7e-0741.89uncharacterized protein LOC115723746 [Cannabis sativa][more]
KAF4359769.14.8e-0740.91hypothetical protein F8388_008331 [Cannabis sativa][more]
KAF4362586.14.8e-0737.93hypothetical protein F8388_011413 [Cannabis sativa][more]
Match NameE-valueIdentityDescription
A0A803Q1A03.6e-0840.91Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A803Q0L98.0e-0840.48Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A7J6GE832.3e-0739.29RNase H domain-containing protein OS=Cannabis sativa OX=3483 GN=F8388_016227 PE=... [more]
A0A7J6EPY62.3e-0740.91Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_008331 PE=4 SV=1[more]
A0A803NTC12.3e-0744.59Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT5G65005.11.3e-0532.91Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 26..93
e-value: 4.4E-6
score: 28.8
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 31..93
e-value: 2.8E-11
score: 43.3
NoneNo IPR availablePANTHERPTHR47074:SF25SUBFAMILY NOT NAMEDcoord: 15..92
NoneNo IPR availablePANTHERPTHR47074BNAC02G40300D PROTEINcoord: 15..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005727.1Tan0005727.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity