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Tan0005681 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGGTGTCCGGTCGAGTCTCTGCTGATCCAAAGAAAAGTGGAGGCCGTCACACGCTGGCCTCGTCCCGACCACGCTTCTGAGGTACGTAGTTTTCTCGGTCTTGCAGGATACTATAGGCGTTTAAATGCAGATTTTGCCAAGATAGCCATGCCTATGACTCACTCGGTGGCGCGTAAGGGAAACTCTTTGTTTGGGATGATGCTTGTGAAGCGAGTTTCCGTGAACTCAAGCACGATTAGTGTCACCCTCGATTCTTACAGATTCCAGGAAACAGGAGCTTGTGGTTTACAAATGATGCTTCCAAGAAAGGGGTTGGGCACTGTACGTATCGATGCAAAGCAGGTAAAGTAATAGCTTATGCATCCCGACAATTGAAGACACACGAGAGGAACTATCCAACTCATGACCTGGAACTAGCAAAGAAGTGGTATTTGCGCTTAAAAATGCGGAGACACTACTCAGATATGGCGAGAAAATTCGATTTTTACAGATCATAAAAATCTCAAGTATTTGTTCACCCGTATGAATTGAACATGAGGCAACGCAGATGGTTGGAATTGGTGAAAGATTATGATATTGACATACGCACTCATCCCGGTAAGGCTAATGTAGTGGCCGATGCCCTCAAATGAAGCTTGATGCATCATCACTGCGAGTGATGATGCATATGCAGAGTTACAGTGCGAGTTTGCTCGAGCCAAATTGCGCAGTGCTAGTAGGAAAGACCACAACTCGCTTAGCCCGCCAACGCAGGCAACCGACCTTGAGGCAACGTATTATAGAGGCTCGCAAGTGGACCCTCGCCAGTGGAAAAACTTACCGCAGAATCGCAGTGAGTTGACGAGTTTTCCCTATCCACAGATGGAGGATTGCTATTTCAGAACGATTGTGTGTGTCGACGCGATGACAAGTCGAGAACCGAGATTTTGAACGCCAAGCCCACAACTCACCATTTTCTATGCATCCCGGCAGCACCAAGATGTACCGAGATCTCAAATGATCGCTTTGGTGGTGCAACATGAAGCGCGACGTGGCGTAGTTTGTCGCCAAGTGTTTGACTTGTCGCAGTGA ATGTGGTGTCCGGTCGAGTCTCTGCTGATCCAAAGAAAAGTGGAGGCCGTCACACGCTGGCCTCGTCCCGACCACGCTTCTGAGGTACGTAGTTTTCTCGGTCTTGCAGGATACTATAGGCGTTTAAATGCAGATTTTGCCAAGATAGCCATGCCTATGACTCACTCGGTGGCGCGTAAGGGAAACTCTTTGTTTGGGATGATGCTTGTGAAGCGAGTTTCCGTGAACTCAAGCACGATTAGTGTCACCCTCGATTCTTACAGATTCCAGGAAACAGGAGCTTGTGGTTTACAAATGATGCTTCCAAGAAAGGGGTTGGGCACTGTACGTATCGATGCAAAGCAGAGTTACAGTGCGAGTTTGCTCGAGCCAAATTGCGCAGTGCTAGTAGGAAAGACCACAACTCGCTTAGCCCGCCAACGCAGGCAACCGACCTTGAGGCAACGTATTATAGAGGCTCGCAAGTGGACCCTCGCCAGTGGAAAAACTTACCGCAGAATCGCACACCAAGATGTACCGAGATCTCAAATGATCGCTTTGGTGGTGCAACATGAAGCGCGACGTGGCGTAGTTTGTCGCCAAGTGTTTGACTTGTCGCAGTGA ATGTGGTGTCCGGTCGAGTCTCTGCTGATCCAAAGAAAAGTGGAGGCCGTCACACGCTGGCCTCGTCCCGACCACGCTTCTGAGGTACGTAGTTTTCTCGGTCTTGCAGGATACTATAGGCGTTTAAATGCAGATTTTGCCAAGATAGCCATGCCTATGACTCACTCGGTGGCGCGTAAGGGAAACTCTTTGTTTGGGATGATGCTTGTGAAGCGAGTTTCCGTGAACTCAAGCACGATTAGTGTCACCCTCGATTCTTACAGATTCCAGGAAACAGGAGCTTGTGGTTTACAAATGATGCTTCCAAGAAAGGGGTTGGGCACTGTACGTATCGATGCAAAGCAGAGTTACAGTGCGAGTTTGCTCGAGCCAAATTGCGCAGTGCTAGTAGGAAAGACCACAACTCGCTTAGCCCGCCAACGCAGGCAACCGACCTTGAGGCAACGTATTATAGAGGCTCGCAAGTGGACCCTCGCCAGTGGAAAAACTTACCGCAGAATCGCACACCAAGATGTACCGAGATCTCAAATGATCGCTTTGGTGGTGCAACATGAAGCGCGACGTGGCGTAGTTTGTCGCCAAGTGTTTGACTTGTCGCAGTGA MWCPVESLLIQRKVEAVTRWPRPDHASEVRSFLGLAGYYRRLNADFAKIAMPMTHSVARKGNSLFGMMLVKRVSVNSSTISVTLDSYRFQETGACGLQMMLPRKGLGTVRIDAKQSYSASLLEPNCAVLVGKTTTRLARQRRQPTLRQRIIEARKWTLASGKTYRRIAHQDVPRSQMIALVVQHEARRGVVCRQVFDLSQ Homology
BLAST of Tan0005681 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 1.8e-06 Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05 Identity = 21/42 (50.00%), Postives = 30/42 (71.43%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05 Identity = 25/52 (48.08%), Postives = 33/52 (63.46%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 50.1 bits (118), Expect = 3.5e-05 Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 1.0e-04 Identity = 26/79 (32.91%), Postives = 40/79 (50.63%), Query Frame = 0
BLAST of Tan0005681 vs. NCBI nr
Match: TYK06287.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 85.5 bits (210), Expect = 5.7e-13 Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 0
BLAST of Tan0005681 vs. NCBI nr
Match: KAA0047535.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 85.5 bits (210), Expect = 5.7e-13 Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 0
BLAST of Tan0005681 vs. NCBI nr
Match: KAA0037397.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 85.1 bits (209), Expect = 7.4e-13 Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Tan0005681 vs. NCBI nr
Match: TYJ97514.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 85.1 bits (209), Expect = 7.4e-13 Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Tan0005681 vs. NCBI nr
Match: KAA0043226.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK21338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 84.3 bits (207), Expect = 1.3e-12 Identity = 62/166 (37.35%), Postives = 84/166 (50.60%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy TrEMBL
Match: A0A5D3C3A1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00720 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13 Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy TrEMBL
Match: A0A5A7U1M8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2963G00110 PE=4 SV=1) HSP 1 Score: 85.5 bits (210), Expect = 2.8e-13 Identity = 65/167 (38.92%), Postives = 88/167 (52.69%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy TrEMBL
Match: A0A5D3BEN0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold85G00240 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 3.6e-13 Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy TrEMBL
Match: A0A5A7T758 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold278G001050 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 3.6e-13 Identity = 64/166 (38.55%), Postives = 88/166 (53.01%), Query Frame = 0
BLAST of Tan0005681 vs. ExPASy TrEMBL
Match: A0A5D3DCV6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1814G00050 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 6.1e-13 Identity = 62/166 (37.35%), Postives = 84/166 (50.60%), Query Frame = 0
BLAST of Tan0005681 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein ) HSP 1 Score: 54.3 bits (129), Expect = 1.3e-07 Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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