Tan0005587 (gene) Snake gourd v1

Overview


Name	Tan0005587
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG06: 43040534 .. 43040794 (-)
RNA-Seq Expression	Tan0005587
Synteny	Tan0005587

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACCGCGAAGGAGATCATGGGATCGTTGCAAGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAACCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGCTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTCCCATTCCGCACCAATGCGGTGA

mRNA sequence

ATGGTCACCGCGAAGGAGATCATGGGATCGTTGCAAGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAACCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGCTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTCCCATTCCGCACCAATGCGGTGA

Coding sequence (CDS)

ATGGTCACCGCGAAGGAGATCATGGGATCGTTGCAAGCGATGTTCGGACAACCGTCCTCATCGGTCCATTATGATGCTCTCAAATACGTTTACAACTCCCGTATGAAGGAGGGAACCTCTGTTAGGGAACATGTCCTTGACATGATGGTCCACTTCAACGTGGCTGAAGTAAATGGGGCTGTCATAGATGAGAAAAGTCAGGTAACCTTTATTATGGATCTCTTCCGAAGAGTTTCCTCCCATTCCGCACCAATGCGGTGA

Protein sequence

MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGAVIDEKSQVTFIMDLFRRVSSHSAPMR

Homology

[Close]

BLAST of Tan0005587 vs. NCBI nr
Match: XP_038880476.1 (uncharacterized protein LOC120072136 [Benincasa hispida])

HSP 1 Score: 115.2 bits (287), Expect = 2.9e-22
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           MV AKEIM SLQA+FGQPSSS  +DA+KYVYN RMKEGT+VREHVLDMMVHFN+ EVNGA
Sbjct: 88  MVMAKEIMDSLQALFGQPSSSAMHDAIKYVYNFRMKEGTNVREHVLDMMVHFNIVEVNGA 147

Query: 61  VIDEKSQVTFIMD 74
           V++EK+Q  FIM+
Sbjct: 148 VMNEKNQGGFIME 160

[Close]

BLAST of Tan0005587 vs. NCBI nr
Match: XP_038876370.1 (uncharacterized protein LOC120068812, partial [Benincasa hispida])

HSP 1 Score: 114.8 bits (286), Expect = 3.8e-22
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           MVTAKEIM SLQA+FGQPSSS  +DA+K+VYN RMKEG +VREHVLDMMVHFN+ EVN A
Sbjct: 88  MVTAKEIMNSLQALFGQPSSSAMHDAIKWVYNCRMKEGPNVREHVLDMMVHFNITEVNRA 147

Query: 61  VIDEKSQVTFIMD 74
           V++EKSQV FIM+
Sbjct: 148 VMNEKSQVGFIME 160

[Close]

BLAST of Tan0005587 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0005587 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 87  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 146

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 147 VIDEASQVSFILE 159

[Close]

BLAST of Tan0005587 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 111.3 bits (277), Expect = 4.2e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0005587 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0005587 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0005587 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 205 MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 264

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 265 VIDEASQVSFILE 277

[Close]

BLAST of Tan0005587 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

[Close]

BLAST of Tan0005587 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.0e-21
Identity = 53/73 (72.60%), Postives = 64/73 (87.67%), Query Frame = 0


Query: 1   MVTAKEIMGSLQAMFGQPSSSVHYDALKYVYNSRMKEGTSVREHVLDMMVHFNVAEVNGA 60
           M+TA+EIM SLQ MFGQ S  + +DALKY+YN+RM EG SVREHVL+MMVHFNVAE+NGA
Sbjct: 88  MLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGA 147

Query: 61  VIDEKSQVTFIMD 74
           VIDE SQV+FI++
Sbjct: 148 VIDEASQVSFILE 160

The following BLAST results are available for this feature:

BLAST of Tan0005587 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005587 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038880476.1	2.9e-22	76.71	uncharacterized protein LOC120072136 [Benincasa hispida]	[more]
XP_038876370.1	3.8e-22	76.71	uncharacterized protein LOC120068812, partial [Benincasa hispida]	[more]
KAA0044955.1	4.2e-21	72.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	4.2e-21	72.60	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	4.2e-21	72.60	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0005587 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	2.0e-21	72.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	2.0e-21	72.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	2.0e-21	72.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	2.0e-21	72.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	2.0e-21	72.60	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0005587 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..74
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005587.1	Tan0005587.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding