Tan0005530 (gene) Snake gourd v1

Overview


Name	Tan0005530
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Histone H2A
Location	LG05: 2663702 .. 2664564 (-)
RNA-Seq Expression	Tan0005530
Synteny	Tan0005530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACCCAAACCAGATCAACACTTCACCAACGGCAATCAAATCTCCGATAACTCTCCGGCAAGCAGTAGCTTTCGTTTCTAAATCCTTCGATCAGTGTCCAATGGAGACCGGCGGCAAGGCAAAGAAAGGAGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCGGTTTCTCGCTCCGTCAAGGCCGGTCTGCAGTTCCCCGTCGGCCGTATCGCTCGCTATCTGAAGAAGGGACGATACGCCCAGCGTGTCGGCACGGGCGCTCCGGTCTACTTGGCCGCAGTGATGGAGTATCTAGCAGCTGAGGTAATCGAAATCGTCATTTTCCTCTTCCTCTTCATCCTTTTCTTTCGAATCGCTATTGTTCTAATCTTCTATCAATGCGATTTGCAGGTTCTGGAGTTGGCCGGAAATGCTGCTAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTACTATTGGCGATCAGGAACGACGAGGAACTCGGAAAGTTGCTCGCCGGCGTAACCATTGCCAGTGGCGGTGTTCTTCCGAACATCAACCCGGTTCTGTTGCCAAAGAAGACGGACAAGGCTTTGAAAGAGCCAAAATCTCCATCGAAGGCCGGCAAGTCTCCGAGCAAGGCCTAAATCCAGTTCTGTAATTTATGACCGTCTTTTTGGATTTGATCTTCCATCTTTTTGTTGTTATTGTAAGCGTAGACGAAGAATTAGGGATTTGGAATGCAATACTGTATTTCGATATGTCTTGTTTACAAATTTACCGGCGAGGAATCGACCTGATGACTTGTTCTGTTCTTAAATTCCCAAAAACTTATTGTTCACTTATTTCGAATCTCATTATCTGTTCTTCATTTTCAC

mRNA sequence

ACCCAAACCAGATCAACACTTCACCAACGGCAATCAAATCTCCGATAACTCTCCGGCAAGCAGTAGCTTTCGTTTCTAAATCCTTCGATCAGTGTCCAATGGAGACCGGCGGCAAGGCAAAGAAAGGAGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCGGTTTCTCGCTCCGTCAAGGCCGGTCTGCAGTTCCCCGTCGGCCGTATCGCTCGCTATCTGAAGAAGGGACGATACGCCCAGCGTGTCGGCACGGGCGCTCCGGTCTACTTGGCCGCAGTGATGGAGTATCTAGCAGCTGAGGTTCTGGAGTTGGCCGGAAATGCTGCTAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTACTATTGGCGATCAGGAACGACGAGGAACTCGGAAAGTTGCTCGCCGGCGTAACCATTGCCAGTGGCGGTGTTCTTCCGAACATCAACCCGGTTCTGTTGCCAAAGAAGACGGACAAGGCTTTGAAAGAGCCAAAATCTCCATCGAAGGCCGGCAAGTCTCCGAGCAAGGCCTAAATCCAGTTCTGTAATTTATGACCGTCTTTTTGGATTTGATCTTCCATCTTTTTGTTGTTATTGTAAGCGTAGACGAAGAATTAGGGATTTGGAATGCAATACTGTATTTCGATATGTCTTGTTTACAAATTTACCGGCGAGGAATCGACCTGATGACTTGTTCTGTTCTTAAATTCCCAAAAACTTATTGTTCACTTATTTCGAATCTCATTATCTGTTCTTCATTTTCAC

Coding sequence (CDS)

ATGGAGACCGGCGGCAAGGCAAAGAAAGGAGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCGGTTTCTCGCTCCGTCAAGGCCGGTCTGCAGTTCCCCGTCGGCCGTATCGCTCGCTATCTGAAGAAGGGACGATACGCCCAGCGTGTCGGCACGGGCGCTCCGGTCTACTTGGCCGCAGTGATGGAGTATCTAGCAGCTGAGGTTCTGGAGTTGGCCGGAAATGCTGCTAGAGACAACAAGAAGAACAGAATCATTCCAAGGCACGTACTATTGGCGATCAGGAACGACGAGGAACTCGGAAAGTTGCTCGCCGGCGTAACCATTGCCAGTGGCGGTGTTCTTCCGAACATCAACCCGGTTCTGTTGCCAAAGAAGACGGACAAGGCTTTGAAAGAGCCAAAATCTCCATCGAAGGCCGGCAAGTCTCCGAGCAAGGCCTAA

Protein sequence

METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKALKEPKSPSKAGKSPSKA

Homology

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BLAST of Tan0005530 vs. ExPASy Swiss-Prot
Match: P19177 (Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 9.3e-64
Identity = 131/149 (87.92%), Postives = 139/149 (93.29%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           MET GKAKKG GGR+GG +KK+V+RSVKAGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METAGKAKKGFGGRKGGPRKKSVTRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKK RIIPRH+LLA+RNDEELGKLLAGVT A GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNIN 120

Query: 121 PVLLPKKT-DKALKEPKSPSKAGKSPSKA 149
           PVLLPKKT +KA KEPKSPSKAGKSP KA
Sbjct: 121 PVLLPKKTAEKAAKEPKSPSKAGKSPKKA 149

[Close]

BLAST of Tan0005530 vs. ExPASy Swiss-Prot
Match: Q2HU68 (Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 2.8e-60
Identity = 123/148 (83.11%), Postives = 133/148 (89.86%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           M+   K KKGAGGR+GG +KK+V+RS +AGLQFPVGRI RYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   MDASTKTKKGAGGRKGGPRKKSVTRSTRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNIN
Sbjct: 61  AVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           P+LLPKK +KA    KSPSKA KSP KA
Sbjct: 121 PILLPKKNEKAATTTKSPSKATKSPKKA 148

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BLAST of Tan0005530 vs. ExPASy Swiss-Prot
Match: Q9M531 (Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 4.8e-60
Identity = 129/153 (84.31%), Postives = 137/153 (89.54%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+TG K KKGAG R+ GG KKK VSRSVKAGLQFPVGRI R+LKKGRYAQRVG+GAPVYL
Sbjct: 1   MDTGAKLKKGAGERKGGGPKKKPVSRSVKAGLQFPVGRIGRFLKKGRYAQRVGSGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDK----ALKEPKSPSKAGKSPSKA 149
           NPVLLPKK +K    A KEPKSP+KA KSP KA
Sbjct: 121 NPVLLPKKAEKAAAAATKEPKSPAKATKSPKKA 153

[Close]

BLAST of Tan0005530 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 6.9e-59
Identity = 126/153 (82.35%), Postives = 138/153 (90.20%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYL 60
           M+   K KKGAGGR+ GG +KK+V+RS++AGLQFPVGRI RYLKKGRYAQRVGTGAPVYL
Sbjct: 1   MDASTKTKKGAGGRKGGGPRKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYL 60

Query: 61  AAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNI 120
           AAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELGKLLAGVTIA GGVLPNI
Sbjct: 61  AAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNI 120

Query: 121 NPVLLPKKTDKA---LKEPKSPS-KAGKSPSKA 149
           NPVLLPKKT+++    KEPKSP  KAGKSP KA
Sbjct: 121 NPVLLPKKTERSNTVSKEPKSPKPKAGKSPKKA 153

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BLAST of Tan0005530 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 226.5 bits (576), Expect = 2.0e-58
Identity = 130/151 (86.09%), Postives = 135/151 (89.40%), Query Frame = 0


Query: 4   GGKAKKGAGGRR-GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAV 63
           GGK KKGA GR+ GG +KKAVSRSVKAGLQFPVGRI RYLKKGRYAQR+GTGAPVYLAAV
Sbjct: 9   GGKLKKGAAGRKAGGPRKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRIGTGAPVYLAAV 68

Query: 64  MEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPV 123
           +EYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIA GGVLPNINPV
Sbjct: 69  LEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPV 128

Query: 124 LLPKKTDK----ALKEPKSPSK-AGKSPSKA 149
           LLPKKT +    A KE KSP K AGKSP KA
Sbjct: 129 LLPKKTAEKAAAAGKEAKSPKKAAGKSPKKA 159

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BLAST of Tan0005530 vs. NCBI nr
Match: XP_008448380.1 (PREDICTED: histone H2A [Cucumis melo])

HSP 1 Score: 271.9 bits (694), Expect = 3.2e-69
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           PVLLPKKTDK  KEPKSPSKAGKSPSKA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKA 148

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BLAST of Tan0005530 vs. NCBI nr
Match: XP_022943937.1 (histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 268.9 bits (686), Expect = 2.7e-68
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           PVLLPKKTDKALKEPKSPSKAGKSPSKA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 148

[Close]

BLAST of Tan0005530 vs. NCBI nr
Match: XP_022986957.1 (histone H2A [Cucurbita maxima])

HSP 1 Score: 267.7 bits (683), Expect = 6.0e-68
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 148
           PVLLPKKTDKALKEPKSPSKAGKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Tan0005530 vs. NCBI nr
Match: XP_023532320.1 (histone H2A-like [Cucurbita pepo subsp. pepo] >XP_023532321.1 histone H2A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           P+LLPKKTDKA+KEPKSPSK GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Tan0005530 vs. NCBI nr
Match: XP_023006960.1 (histone H2A-like [Cucurbita maxima])

HSP 1 Score: 262.3 bits (669), Expect = 2.5e-66
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           P+LLPKKTDKA+KEPKSPSK GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Tan0005530 vs. ExPASy TrEMBL
Match: A0A1S3BK65 (Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69
Identity = 146/148 (98.65%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA
Sbjct: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           PVLLPKKTDK  KEPKSPSKAGKSPSKA
Sbjct: 121 PVLLPKKTDKGTKEPKSPSKAGKSPSKA 148

[Close]

BLAST of Tan0005530 vs. ExPASy TrEMBL
Match: A0A6J1FUE6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.3e-68
Identity = 144/148 (97.30%), Postives = 146/148 (98.65%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           PVLLPKKTDKALKEPKSPSKAGKSPSKA
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 148

[Close]

BLAST of Tan0005530 vs. ExPASy TrEMBL
Match: A0A6J1J904 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.9e-68
Identity = 143/147 (97.28%), Postives = 145/147 (98.64%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME  GKAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASGKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 148
           PVLLPKKTDKALKEPKSPSKAGKSPSK
Sbjct: 121 PVLLPKKTDKALKEPKSPSKAGKSPSK 147

[Close]

BLAST of Tan0005530 vs. ExPASy TrEMBL
Match: A0A6J1L1N2 (Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEASAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           P+LLPKKTDKA+KEPKSPSK GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Tan0005530 vs. ExPASy TrEMBL
Match: A0A6J1G6M6 (Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 1.2e-66
Identity = 139/148 (93.92%), Postives = 144/148 (97.30%), Query Frame = 0


Query: 1   METGGKAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLA 60
           ME   KAKKGAGGRRGGEKKK+VSRSVKAGLQFPVGRIARYLKKGRY+QRVGTGAPVYLA
Sbjct: 1   MEVSAKAKKGAGGRRGGEKKKSVSRSVKAGLQFPVGRIARYLKKGRYSQRVGTGAPVYLA 60

Query: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120
           AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN
Sbjct: 61  AVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNIN 120

Query: 121 PVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           P+LLPKKTDKA+KEPKSPSK GKSPSK+
Sbjct: 121 PILLPKKTDKAVKEPKSPSKGGKSPSKS 148

[Close]

BLAST of Tan0005530 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 224.6 bits (571), Expect = 5.4e-59
Identity = 124/153 (81.05%), Postives = 135/153 (88.24%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           LAAV+EYLAAEVLELAGNAARDNKKNRIIPRHVLLA+RNDEELG LL GVTIA GGVLPN
Sbjct: 61  LAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKA---LKEPKSPSKAGKSPSKA 149
           INP+LLPKK++KA    K PKSPSKA KSP K+
Sbjct: 121 INPILLPKKSEKAASTTKTPKSPSKATKSPKKS 153

[Close]

BLAST of Tan0005530 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 211.1 bits (536), Expect = 6.2e-55
Identity = 124/177 (70.06%), Postives = 135/177 (76.27%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           M++G K KKGA GRR  GG KKK VSRSVK+GLQFPVGRI RYLKKGRY++RVGTGAPVY
Sbjct: 1   MDSGTKVKKGAAGRRSGGGPKKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVY 60

Query: 61  LAAVMEYLAAE------------------------VLELAGNAARDNKKNRIIPRHVLLA 120
           LAAV+EYLAAE                        VLELAGNAARDNKKNRIIPRHVLLA
Sbjct: 61  LAAVLEYLAAENSCGFCSVASLTIYRCRMSSSDFRVLELAGNAARDNKKNRIIPRHVLLA 120

Query: 121 IRNDEELGKLLAGVTIASGGVLPNINPVLLPKKTDKA---LKEPKSPSKAGKSPSKA 149
           +RNDEELG LL GVTIA GGVLPNINP+LLPKK++KA    K PKSPSKA KSP K+
Sbjct: 121 VRNDEELGTLLKGVTIAHGGVLPNINPILLPKKSEKAASTTKTPKSPSKATKSPKKS 177

[Close]

BLAST of Tan0005530 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 205.3 bits (521), Expect = 3.4e-53
Identity = 112/143 (78.32%), Postives = 126/143 (88.11%), Query Frame = 0


Query: 6   KAKKGAGGRRGGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEY 65
           K  +GAGGR+GG++KK+VS+SVKAGLQFPVGRIARYLKKGRYA R G+GAPVYLAAV+EY
Sbjct: 9   KPTRGAGGRKGGDRKKSVSKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEY 68

Query: 66  LAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLP 125
           LAAEVLELAGNAARDNKKNRI PRH+ LAIRNDEELG+LL GVTIASGGVLPNINPVLLP
Sbjct: 69  LAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLP 128

Query: 126 KKTDKALKEPKSPSKAGKSPSKA 149
           KK+  +  + +  S A KSP KA
Sbjct: 129 KKSTASSSQAEKAS-ATKSPKKA 150

[Close]

BLAST of Tan0005530 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 198.4 bits (503), Expect = 4.1e-51
Identity = 111/150 (74.00%), Postives = 125/150 (83.33%), Query Frame = 0


Query: 1   METGGKAKKGAGGRR--GGEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVY 60
           ME+ GK KK  GGR+  G  K K+VS+S+KAGLQFPVGRI R+LKKGRYAQR+G GAPVY
Sbjct: 1   MESTGKVKKAFGGRKPPGAPKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVY 60

Query: 61  LAAVMEYLAAEVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPN 120
           +AAV+EYLAAEVLELAGNAARDNKK+RIIPRH+LLAIRNDEELGKLL+GVTIA GGVLPN
Sbjct: 61  MAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPN 120

Query: 121 INPVLLPKKTDKALKEPKSPSKAGKSPSKA 149
           IN VLLPKK+     E K+     KSP KA
Sbjct: 121 INSVLLPKKSATKPAEEKATKSPVKSPKKA 150

[Close]

BLAST of Tan0005530 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 177.6 bits (449), Expect = 7.6e-45
Identity = 89/112 (79.46%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 17  GEKKKAVSRSVKAGLQFPVGRIARYLKKGRYAQRVGTGAPVYLAAVMEYLAAEVLELAGN 76
           G  KKA +RS KAGLQFPVGRIAR+LKKG+YA+RVG GAPVYLAAV+EYLAAEVLELAGN
Sbjct: 11  GSAKKATTRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGN 70

Query: 77  AARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIASGGVLPNINPVLLPKKT 129
           AARDNKK RI+PRH+ LA+RNDEEL KLL  VTIA+GGV+PNI+ +LLPKKT
Sbjct: 71  AARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122

The following BLAST results are available for this feature:

BLAST of Tan0005530 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P19177	9.3e-64	87.92	Histone H2A OS=Petroselinum crispum OX=4043 PE=2 SV=1	[more]
Q2HU68	2.8e-60	83.11	Probable histone H2A.1 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g1v1 P...	[more]
Q9M531	4.8e-60	84.31	Histone H2A OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]
Q2HU65	6.9e-59	82.35	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]
A2WQG7	2.0e-58	86.09	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]

BLAST of Tan0005530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448380.1	3.2e-69	98.65	PREDICTED: histone H2A [Cucumis melo]	[more]
XP_022943937.1	2.7e-68	97.30	histone H2A [Cucurbita moschata] >XP_023512023.1 histone H2A [Cucurbita pepo sub...	[more]
XP_022986957.1	6.0e-68	97.28	histone H2A [Cucurbita maxima]	[more]
XP_023532320.1	2.5e-66	93.92	histone H2A-like [Cucurbita pepo subsp. pepo] >XP_023532321.1 histone H2A-like [...	[more]
XP_023006960.1	2.5e-66	93.92	histone H2A-like [Cucurbita maxima]	[more]

BLAST of Tan0005530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BK65	1.5e-69	98.65	Histone H2A OS=Cucumis melo OX=3656 GN=LOC103490586 PE=3 SV=1	[more]
A0A6J1FUE6	1.3e-68	97.30	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111448508 PE=3 SV=1	[more]
A0A6J1J904	2.9e-68	97.28	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111484538 PE=3 SV=1	[more]
A0A6J1L1N2	1.2e-66	93.92	Histone H2A OS=Cucurbita maxima OX=3661 GN=LOC111499596 PE=3 SV=1	[more]
A0A6J1G6M6	1.2e-66	93.92	Histone H2A OS=Cucurbita moschata OX=3662 GN=LOC111451351 PE=3 SV=1	[more]

BLAST of Tan0005530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02560.1	5.4e-59	81.05	histone H2A 12	[more]
AT5G02560.2	6.2e-55	70.06	histone H2A 12	[more]
AT5G27670.1	3.4e-53	78.32	histone H2A 7	[more]
AT5G59870.1	4.1e-51	74.00	histone H2A 6	[more]
AT1G51060.1	7.6e-45	79.46	histone H2A 10	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002119	Histone H2A	PRINTS	PR00620	HISTONEH2A	coord: 50..65 score: 81.37 coord: 65..78 score: 89.46 coord: 107..125 score: 76.19 coord: 21..43 score: 71.22 coord: 79..93 score: 73.78
IPR002119	Histone H2A	SMART	SM00414	h2a4	coord: 10..130 e-value: 2.0E-79 score: 279.9
IPR002119	Histone H2A	CDD	cd00074	H2A	coord: 19..127 e-value: 4.22818E-67 score: 197.172
IPR007125	Histone H2A/H2B/H3	PFAM	PF00125	Histone	coord: 16..96 e-value: 1.1E-13 score: 51.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 6..137 e-value: 2.6E-64 score: 216.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 24..127
IPR032454	Histone H2A, C-terminal domain	PFAM	PF16211	Histone_H2A_C	coord: 99..131 e-value: 1.6E-18 score: 66.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 127..148
None	No IPR available	PANTHER	PTHR23430:SF304	HISTONE H2A	coord: 8..143
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 8..143
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 29..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005530.1	Tan0005530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031507	heterochromatin assembly
cellular_component	GO:0000775	chromosome, centromeric region
cellular_component	GO:0000792	heterochromatin
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046982	protein heterodimerization activity