Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAAGGGAGAGCTGCAGACTTGCACCATTTTGATCCTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAGAGCAGAAACACAGACTATGGCTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATACTGAGAAGGCTGGAATAGTCCATGCACCTATCAATGCTAATAATTTTGAACTTAAGACAGGGTTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCTCATCTTCAAAACTTCTTAGAAATCTGTGGTACAGTTAAAATGAATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCAGGGTAGAGCCAAAGAATGA
mRNA sequence
ATGCCCAAAGGGAGAGCTGCAGACTTGCACCATTTTGATCCTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAGAGCAGAAACACAGACTATGGCTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATACTGAGAAGGCTGGAATAGTCCATGCACCTATCAATGCTAATAATTTTGAACTTAAGACAGGGTTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCTCATCTTCAAAACTTCTTAGAAATCTGTGGTACAGTTAAAATGAATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCAGGGTAGAGCCAAAGAATGA
Coding sequence (CDS)
ATGCCCAAAGGGAGAGCTGCAGACTTGCACCATTTTGATCCTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAGAGCAGAAACACAGACTATGGCTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATACTGAGAAGGCTGGAATAGTCCATGCACCTATCAATGCTAATAATTTTGAACTTAAGACAGGGTTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCTCATCTTCAAAACTTCTTAGAAATCTGTGGTACAGTTAAAATGAATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCAGGGTAGAGCCAAAGAATGA
Protein sequence
MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISADSIRLRLFPFSLQGRAKE
Homology
BLAST of Tan0005452 vs. NCBI nr
Match:
WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])
HSP 1 Score: 151.8 bits (382), Expect = 4.3e-33
Identity = 78/133 (58.65%), Postives = 95/133 (71.43%), Query Frame = 0
Query: 1 MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAG 60
MP+ +L DPEI+RT RR LR +T MA++ PK IR+YFQP + G
Sbjct: 17 MPRDN-TNLLPLDPEIDRTYRRNLRALLNQTTEMAEE----IPKAIRDYFQPTLPASQPG 76
Query: 61 IVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISADSIRL 120
I++ PIN NNFELK GLIQM RE AFRG EDP+ HL++FLEICGTVKMNG+S D+I+L
Sbjct: 77 IMNVPINVNNFELKPGLIQMARELAFRGRTNEDPHKHLRSFLEICGTVKMNGVSNDAIKL 136
Query: 121 RLFPFSLQGRAKE 134
RLFPFSLQ RAK+
Sbjct: 137 RLFPFSLQDRAKD 144
BLAST of Tan0005452 vs. NCBI nr
Match:
XP_022843226.1 (uncharacterized protein LOC111366761 [Olea europaea var. sylvestris])
HSP 1 Score: 135.2 bits (339), Expect = 4.2e-28
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 0
Query: 1 MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQEL-----INNPKPIREYFQPVFN 60
M + R DL H DPE ERT R L R E + MA+Q++ N + IR+Y +PV N
Sbjct: 94 MRRARNLDLLHVDPEPERTFRILRGIQRNEREAMAEQDVRAANEDNQQRAIRDYIRPVVN 153
Query: 61 TEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISA 120
+GI I A NFELK GLI MV++ F G A EDPN+HL +FLEIC TVKMNG++
Sbjct: 154 DNYSGIARPAIVAKNFELKPGLIDMVQQNQFGGAAVEDPNAHLGSFLEICDTVKMNGVTE 213
Query: 121 DSIRLRLFPFSLQGRAK 133
D+IRLRLF FSL+ +AK
Sbjct: 214 DAIRLRLFSFSLRDKAK 230
BLAST of Tan0005452 vs. NCBI nr
Match:
KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])
HSP 1 Score: 129.4 bits (324), Expect = 2.3e-26
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 0
Query: 1 MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAG 60
M + R+ D+ DPEIERT R L R + MA+++ P+ +++Y +PV N +
Sbjct: 1 MRRARSRDIIPVDPEIERTLRSLRRN---KILAMAEEDREVLPRTLKDYVRPVVNGNYSS 60
Query: 61 IVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISADSIRL 120
I+ PINANNFELK LI MV++ F G +DPN HL FLEIC TVK+NG++ D+IRL
Sbjct: 61 IMRQPINANNFELKPALISMVQQAQFSGSPLDDPNIHLAMFLEICDTVKINGVTEDTIRL 120
Query: 121 RLFPFSLQGRAK 133
RLFPFSL+ +A+
Sbjct: 121 RLFPFSLRDKAR 129
BLAST of Tan0005452 vs. NCBI nr
Match:
XP_017428686.1 (PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis])
HSP 1 Score: 128.3 bits (321), Expect = 5.1e-26
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 0
Query: 12 FDPEIERTCR-----------------RLLREGRAETQTMADQELINNPKPIREYFQPVF 71
FD EIERT R RL+ +G+ ET TMADQE + K +R+Y P
Sbjct: 18 FDSEIERTARRNRSSARRRKRERRQEQRLIEQGK-ETSTMADQEPVR--KTLRDYSMPNP 77
Query: 72 NTEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGIS 131
N+ + IV PI ANNFE+K L+Q++++ F G +EDPNSHL+NFL IC T+K NG+S
Sbjct: 78 NSYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGTNSEDPNSHLENFLAICDTLKYNGVS 137
Query: 132 ADSIRLRLFPFSLQGRAK 133
D+IRLRLFPFSL+ +AK
Sbjct: 138 DDAIRLRLFPFSLRDKAK 152
BLAST of Tan0005452 vs. NCBI nr
Match:
XP_017405956.1 (PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis])
HSP 1 Score: 124.0 bits (310), Expect = 9.6e-25
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 0
Query: 12 FDPEIERT-------CRRLLREGR---------AETQTMADQELINNPKPIREYFQPVFN 71
FD EIERT RR RE R ET TMADQE + K +R+Y P N
Sbjct: 69 FDSEIERTTRSNRSSARRRKRERRKEQRRIEREEETSTMADQEPVR--KTLRDYSMPNPN 128
Query: 72 TEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISA 131
+ + IV PI ANNFE+K L+Q++++ F G +EDPNSHL+NFL IC T+K+N +S
Sbjct: 129 SYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGANSEDPNSHLENFLAICDTLKINEVSD 188
Query: 132 DSIRLRLFPFSLQGRAK 133
D+IRLRLFPFSL+ +AK
Sbjct: 189 DAIRLRLFPFSLRDKAK 203
BLAST of Tan0005452 vs. ExPASy TrEMBL
Match:
A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)
HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 0
Query: 41 NNPKPIREYFQPVFNTEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQN 100
NN IR+Y QP F GI++ PINANN ELK GLIQMVRE FRG ATEDPN+HL
Sbjct: 22 NNQMTIRDYCQPNF-PNHVGIINLPINANNSELKPGLIQMVRENTFRGNATEDPNNHLTI 81
Query: 101 FLEICGTVKMNGISADSIRLRLFPFSLQGR 131
FL++CGTVKMNG+ D+IRLRLFP SLQ +
Sbjct: 82 FLDVCGTVKMNGVIDDAIRLRLFPLSLQDK 110
BLAST of Tan0005452 vs. ExPASy TrEMBL
Match:
A0A1U8Q202 (uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 0
Query: 12 FDPEIERT-CRRL--LREGRAETQTMADQELINNPKPIREYFQPVFNTEKAGIVHAPINA 71
+DPEIERT C RL R+ RAET+ MA+ P+ + +Y +P IV I+A
Sbjct: 6 YDPEIERTLCIRLRAARQVRAETEEMAE------PRTMMDYAKPTLTGAALSIVRPAISA 65
Query: 72 NNFELKTGLIQMVREGA-FRGLATEDPNSHLQNFLEICGTVKMNGISADSIRLRLFPFSL 131
NNFE+K +IQM++ F G+A EDPNSH+ NFLEIC T K NG+S D +RLRLFPFSL
Sbjct: 66 NNFEIKPAIIQMIQNTVQFCGMANEDPNSHIANFLEICDTFKHNGVSDDVVRLRLFPFSL 124
Query: 132 QGRAK 133
+ +AK
Sbjct: 126 KDKAK 124
BLAST of Tan0005452 vs. ExPASy TrEMBL
Match:
A0A2H9ZY12 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 0
Query: 1 MPKGRAADLHHFDPEIERTCRRLLREGRAET-------------QTMADQELINNP-KPI 60
M + DL FDPEIERT ++ R+ + + M DQ I + +
Sbjct: 1 MTRSSKKDLAPFDPEIERTIAKITRQLKEQEVRGQLNKVKKDLFTKMEDQPTIQEAGRAL 60
Query: 61 REYFQPVFNTEKAGIVHAPINANNFELKTGLIQMVREGA-FRGLATEDPNSHLQNFLEIC 120
REY P N +V + ANNFE+K LIQM+++ F GL ++DPN+H+ NFLEIC
Sbjct: 61 REYALPSINGANTSVVRPAVQANNFEIKPALIQMIQQSVQFYGLPSDDPNTHIANFLEIC 120
Query: 121 GTVKMNGISADSIRLRLFPFSLQGRAK 133
T K NG+S D+IRLRLFPFSL+ +AK
Sbjct: 121 DTFKHNGVSDDAIRLRLFPFSLKDKAK 147
BLAST of Tan0005452 vs. ExPASy TrEMBL
Match:
A0A1S3UKD4 (uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766267 PE=4 SV=1)
HSP 1 Score: 116.7 bits (291), Expect = 7.4e-23
Identity = 65/137 (47.45%), Postives = 83/137 (60.58%), Query Frame = 0
Query: 12 FDPEIERT-------CRRLLREGR---------AETQTMADQELINNPKPIREYFQPVFN 71
FD IERT RR RE R ET TM +++ N K IR+Y P N
Sbjct: 12 FDSRIERTARSNRSSARRRKRERRKEQRRIEQEEETSTMTEEQ--NPRKTIRDYSMPDPN 71
Query: 72 TEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISA 131
+ IV PI ANNFE+K L+Q++++ F G +EDPNSHL+NFL IC T+K NG+S
Sbjct: 72 GYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGAVSEDPNSHLENFLAICDTLKYNGVSD 131
Query: 132 DSIRLRLFPFSLQGRAK 133
D+I LRLFPFSL+ +AK
Sbjct: 132 DAICLRLFPFSLRDKAK 146
BLAST of Tan0005452 vs. ExPASy TrEMBL
Match:
A0A1U8Q000 (uncharacterized protein LOC109114250 OS=Nelumbo nucifera OX=4432 GN=LOC109114250 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 0
Query: 12 FDPEIERT---CRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAGIVHAPINA 71
+DP+IERT C R R+ RAE + MA+ P+ + +Y +P + IV I A
Sbjct: 12 YDPKIERTLCICLRAARQIRAEIEEMAE------PRTMMDYAKPTLTEAASSIVRPAIAA 71
Query: 72 NNFELKTGLIQMVREGA-FRGLATEDPNSHLQNFLEICGTVKMNGISADSIRLRLFPFSL 131
NNFE+K +IQM++ F G+A EDPNSH+ NFLEIC T K NG+S D++RLRLF FSL
Sbjct: 72 NNFEIKPAIIQMIQNTVQFCGMAHEDPNSHIANFLEICDTFKHNGVSDDAVRLRLFSFSL 130
Query: 132 QGRAK 133
+ +AK
Sbjct: 132 KDKAK 130
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
WP_217833153.1 | 4.3e-33 | 58.65 | retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... | [more] |
XP_022843226.1 | 4.2e-28 | 51.82 | uncharacterized protein LOC111366761 [Olea europaea var. sylvestris] | [more] |
KAG7990634.1 | 2.3e-26 | 48.48 | hypothetical protein I3843_02G035100 [Carya illinoinensis] | [more] |
XP_017428686.1 | 5.1e-26 | 49.28 | PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis] | [more] |
XP_017405956.1 | 9.6e-25 | 49.64 | PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis] | [more] |
Match Name | E-value | Identity | Description | |
A0A6J1DU19 | 2.3e-24 | 65.56 | uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024... | [more] |
A0A1U8Q202 | 1.1e-23 | 51.20 | uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208... | [more] |
A0A2H9ZY12 | 2.5e-23 | 42.86 | Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 P... | [more] |
A0A1S3UKD4 | 7.4e-23 | 47.45 | uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LO... | [more] |
A0A1U8Q000 | 2.2e-22 | 48.00 | uncharacterized protein LOC109114250 OS=Nelumbo nucifera OX=4432 GN=LOC109114250... | [more] |
Match Name | E-value | Identity | Description | |