Tan0005452 (gene) Snake gourd v1

Overview
NameTan0005452
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionRetrotrans_gag domain-containing protein
LocationLG05: 20088742 .. 20089143 (-)
RNA-Seq ExpressionTan0005452
SyntenyTan0005452
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCAAAGGGAGAGCTGCAGACTTGCACCATTTTGATCCTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAGAGCAGAAACACAGACTATGGCTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATACTGAGAAGGCTGGAATAGTCCATGCACCTATCAATGCTAATAATTTTGAACTTAAGACAGGGTTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCTCATCTTCAAAACTTCTTAGAAATCTGTGGTACAGTTAAAATGAATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCAGGGTAGAGCCAAAGAATGA

mRNA sequence

ATGCCCAAAGGGAGAGCTGCAGACTTGCACCATTTTGATCCTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAGAGCAGAAACACAGACTATGGCTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATACTGAGAAGGCTGGAATAGTCCATGCACCTATCAATGCTAATAATTTTGAACTTAAGACAGGGTTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCTCATCTTCAAAACTTCTTAGAAATCTGTGGTACAGTTAAAATGAATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCAGGGTAGAGCCAAAGAATGA

Coding sequence (CDS)

ATGCCCAAAGGGAGAGCTGCAGACTTGCACCATTTTGATCCTGAGATCGAGAGGACCTGTAGGAGACTCCTAAGGGAAGGAAGAGCAGAAACACAGACTATGGCTGATCAGGAGCTCATCAATAACCCTAAACCTATCAGGGAGTATTTCCAACCTGTGTTTAATACTGAGAAGGCTGGAATAGTCCATGCACCTATCAATGCTAATAATTTTGAACTTAAGACAGGGTTGATACAAATGGTTAGGGAAGGTGCTTTCAGAGGCTTAGCCACAGAAGATCCTAACTCTCATCTTCAAAACTTCTTAGAAATCTGTGGTACAGTTAAAATGAATGGTATCTCTGCTGATAGTATTCGCTTACGTCTCTTTCCTTTTTCTTTGCAGGGTAGAGCCAAAGAATGA

Protein sequence

MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISADSIRLRLFPFSLQGRAKE
Homology
BLAST of Tan0005452 vs. NCBI nr
Match: WP_217833153.1 (retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 151.8 bits (382), Expect = 4.3e-33
Identity = 78/133 (58.65%), Postives = 95/133 (71.43%), Query Frame = 0

Query: 1   MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAG 60
           MP+    +L   DPEI+RT RR LR    +T  MA++     PK IR+YFQP     + G
Sbjct: 17  MPRDN-TNLLPLDPEIDRTYRRNLRALLNQTTEMAEE----IPKAIRDYFQPTLPASQPG 76

Query: 61  IVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISADSIRL 120
           I++ PIN NNFELK GLIQM RE AFRG   EDP+ HL++FLEICGTVKMNG+S D+I+L
Sbjct: 77  IMNVPINVNNFELKPGLIQMARELAFRGRTNEDPHKHLRSFLEICGTVKMNGVSNDAIKL 136

Query: 121 RLFPFSLQGRAKE 134
           RLFPFSLQ RAK+
Sbjct: 137 RLFPFSLQDRAKD 144

BLAST of Tan0005452 vs. NCBI nr
Match: XP_022843226.1 (uncharacterized protein LOC111366761 [Olea europaea var. sylvestris])

HSP 1 Score: 135.2 bits (339), Expect = 4.2e-28
Identity = 71/137 (51.82%), Postives = 89/137 (64.96%), Query Frame = 0

Query: 1   MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQEL-----INNPKPIREYFQPVFN 60
           M + R  DL H DPE ERT R L    R E + MA+Q++      N  + IR+Y +PV N
Sbjct: 94  MRRARNLDLLHVDPEPERTFRILRGIQRNEREAMAEQDVRAANEDNQQRAIRDYIRPVVN 153

Query: 61  TEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISA 120
              +GI    I A NFELK GLI MV++  F G A EDPN+HL +FLEIC TVKMNG++ 
Sbjct: 154 DNYSGIARPAIVAKNFELKPGLIDMVQQNQFGGAAVEDPNAHLGSFLEICDTVKMNGVTE 213

Query: 121 DSIRLRLFPFSLQGRAK 133
           D+IRLRLF FSL+ +AK
Sbjct: 214 DAIRLRLFSFSLRDKAK 230

BLAST of Tan0005452 vs. NCBI nr
Match: KAG7990634.1 (hypothetical protein I3843_02G035100 [Carya illinoinensis])

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-26
Identity = 64/132 (48.48%), Postives = 88/132 (66.67%), Query Frame = 0

Query: 1   MPKGRAADLHHFDPEIERTCRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAG 60
           M + R+ D+   DPEIERT R L R    +   MA+++    P+ +++Y +PV N   + 
Sbjct: 1   MRRARSRDIIPVDPEIERTLRSLRRN---KILAMAEEDREVLPRTLKDYVRPVVNGNYSS 60

Query: 61  IVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISADSIRL 120
           I+  PINANNFELK  LI MV++  F G   +DPN HL  FLEIC TVK+NG++ D+IRL
Sbjct: 61  IMRQPINANNFELKPALISMVQQAQFSGSPLDDPNIHLAMFLEICDTVKINGVTEDTIRL 120

Query: 121 RLFPFSLQGRAK 133
           RLFPFSL+ +A+
Sbjct: 121 RLFPFSLRDKAR 129

BLAST of Tan0005452 vs. NCBI nr
Match: XP_017428686.1 (PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis])

HSP 1 Score: 128.3 bits (321), Expect = 5.1e-26
Identity = 68/138 (49.28%), Postives = 89/138 (64.49%), Query Frame = 0

Query: 12  FDPEIERTCR-----------------RLLREGRAETQTMADQELINNPKPIREYFQPVF 71
           FD EIERT R                 RL+ +G+ ET TMADQE +   K +R+Y  P  
Sbjct: 18  FDSEIERTARRNRSSARRRKRERRQEQRLIEQGK-ETSTMADQEPVR--KTLRDYSMPNP 77

Query: 72  NTEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGIS 131
           N+ +  IV  PI ANNFE+K  L+Q++++  F G  +EDPNSHL+NFL IC T+K NG+S
Sbjct: 78  NSYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGTNSEDPNSHLENFLAICDTLKYNGVS 137

Query: 132 ADSIRLRLFPFSLQGRAK 133
            D+IRLRLFPFSL+ +AK
Sbjct: 138 DDAIRLRLFPFSLRDKAK 152

BLAST of Tan0005452 vs. NCBI nr
Match: XP_017405956.1 (PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis])

HSP 1 Score: 124.0 bits (310), Expect = 9.6e-25
Identity = 68/137 (49.64%), Postives = 87/137 (63.50%), Query Frame = 0

Query: 12  FDPEIERT-------CRRLLREGR---------AETQTMADQELINNPKPIREYFQPVFN 71
           FD EIERT        RR  RE R          ET TMADQE +   K +R+Y  P  N
Sbjct: 69  FDSEIERTTRSNRSSARRRKRERRKEQRRIEREEETSTMADQEPVR--KTLRDYSMPNPN 128

Query: 72  TEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISA 131
           + +  IV  PI ANNFE+K  L+Q++++  F G  +EDPNSHL+NFL IC T+K+N +S 
Sbjct: 129 SYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGANSEDPNSHLENFLAICDTLKINEVSD 188

Query: 132 DSIRLRLFPFSLQGRAK 133
           D+IRLRLFPFSL+ +AK
Sbjct: 189 DAIRLRLFPFSLRDKAK 203

BLAST of Tan0005452 vs. ExPASy TrEMBL
Match: A0A6J1DU19 (uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024361 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 59/90 (65.56%), Postives = 68/90 (75.56%), Query Frame = 0

Query: 41  NNPKPIREYFQPVFNTEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQN 100
           NN   IR+Y QP F     GI++ PINANN ELK GLIQMVRE  FRG ATEDPN+HL  
Sbjct: 22  NNQMTIRDYCQPNF-PNHVGIINLPINANNSELKPGLIQMVRENTFRGNATEDPNNHLTI 81

Query: 101 FLEICGTVKMNGISADSIRLRLFPFSLQGR 131
           FL++CGTVKMNG+  D+IRLRLFP SLQ +
Sbjct: 82  FLDVCGTVKMNGVIDDAIRLRLFPLSLQDK 110

BLAST of Tan0005452 vs. ExPASy TrEMBL
Match: A0A1U8Q202 (uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-23
Identity = 64/125 (51.20%), Postives = 83/125 (66.40%), Query Frame = 0

Query: 12  FDPEIERT-CRRL--LREGRAETQTMADQELINNPKPIREYFQPVFNTEKAGIVHAPINA 71
           +DPEIERT C RL   R+ RAET+ MA+      P+ + +Y +P        IV   I+A
Sbjct: 6   YDPEIERTLCIRLRAARQVRAETEEMAE------PRTMMDYAKPTLTGAALSIVRPAISA 65

Query: 72  NNFELKTGLIQMVREGA-FRGLATEDPNSHLQNFLEICGTVKMNGISADSIRLRLFPFSL 131
           NNFE+K  +IQM++    F G+A EDPNSH+ NFLEIC T K NG+S D +RLRLFPFSL
Sbjct: 66  NNFEIKPAIIQMIQNTVQFCGMANEDPNSHIANFLEICDTFKHNGVSDDVVRLRLFPFSL 124

Query: 132 QGRAK 133
           + +AK
Sbjct: 126 KDKAK 124

BLAST of Tan0005452 vs. ExPASy TrEMBL
Match: A0A2H9ZY12 (Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.5e-23
Identity = 63/147 (42.86%), Postives = 85/147 (57.82%), Query Frame = 0

Query: 1   MPKGRAADLHHFDPEIERTCRRLLREGRAET-------------QTMADQELINNP-KPI 60
           M +    DL  FDPEIERT  ++ R+ + +                M DQ  I    + +
Sbjct: 1   MTRSSKKDLAPFDPEIERTIAKITRQLKEQEVRGQLNKVKKDLFTKMEDQPTIQEAGRAL 60

Query: 61  REYFQPVFNTEKAGIVHAPINANNFELKTGLIQMVREGA-FRGLATEDPNSHLQNFLEIC 120
           REY  P  N     +V   + ANNFE+K  LIQM+++   F GL ++DPN+H+ NFLEIC
Sbjct: 61  REYALPSINGANTSVVRPAVQANNFEIKPALIQMIQQSVQFYGLPSDDPNTHIANFLEIC 120

Query: 121 GTVKMNGISADSIRLRLFPFSLQGRAK 133
            T K NG+S D+IRLRLFPFSL+ +AK
Sbjct: 121 DTFKHNGVSDDAIRLRLFPFSLKDKAK 147

BLAST of Tan0005452 vs. ExPASy TrEMBL
Match: A0A1S3UKD4 (uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LOC106766267 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 7.4e-23
Identity = 65/137 (47.45%), Postives = 83/137 (60.58%), Query Frame = 0

Query: 12  FDPEIERT-------CRRLLREGR---------AETQTMADQELINNPKPIREYFQPVFN 71
           FD  IERT        RR  RE R          ET TM +++  N  K IR+Y  P  N
Sbjct: 12  FDSRIERTARSNRSSARRRKRERRKEQRRIEQEEETSTMTEEQ--NPRKTIRDYSMPDPN 71

Query: 72  TEKAGIVHAPINANNFELKTGLIQMVREGAFRGLATEDPNSHLQNFLEICGTVKMNGISA 131
             +  IV  PI ANNFE+K  L+Q++++  F G  +EDPNSHL+NFL IC T+K NG+S 
Sbjct: 72  GYQGSIVRPPIQANNFEIKPALLQVIQQNQFGGAVSEDPNSHLENFLAICDTLKYNGVSD 131

Query: 132 DSIRLRLFPFSLQGRAK 133
           D+I LRLFPFSL+ +AK
Sbjct: 132 DAICLRLFPFSLRDKAK 146

BLAST of Tan0005452 vs. ExPASy TrEMBL
Match: A0A1U8Q000 (uncharacterized protein LOC109114250 OS=Nelumbo nucifera OX=4432 GN=LOC109114250 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.2e-22
Identity = 60/125 (48.00%), Postives = 81/125 (64.80%), Query Frame = 0

Query: 12  FDPEIERT---CRRLLREGRAETQTMADQELINNPKPIREYFQPVFNTEKAGIVHAPINA 71
           +DP+IERT   C R  R+ RAE + MA+      P+ + +Y +P      + IV   I A
Sbjct: 12  YDPKIERTLCICLRAARQIRAEIEEMAE------PRTMMDYAKPTLTEAASSIVRPAIAA 71

Query: 72  NNFELKTGLIQMVREGA-FRGLATEDPNSHLQNFLEICGTVKMNGISADSIRLRLFPFSL 131
           NNFE+K  +IQM++    F G+A EDPNSH+ NFLEIC T K NG+S D++RLRLF FSL
Sbjct: 72  NNFEIKPAIIQMIQNTVQFCGMAHEDPNSHIANFLEICDTFKHNGVSDDAVRLRLFSFSL 130

Query: 132 QGRAK 133
           + +AK
Sbjct: 132 KDKAK 130

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
WP_217833153.14.3e-3358.65retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 70... [more]
XP_022843226.14.2e-2851.82uncharacterized protein LOC111366761 [Olea europaea var. sylvestris][more]
KAG7990634.12.3e-2648.48hypothetical protein I3843_02G035100 [Carya illinoinensis][more]
XP_017428686.15.1e-2649.28PREDICTED: uncharacterized protein LOC108336731 [Vigna angularis][more]
XP_017405956.19.6e-2549.64PREDICTED: uncharacterized protein LOC108319358 [Vigna angularis][more]
Match NameE-valueIdentityDescription
A0A6J1DU192.3e-2465.56uncharacterized protein LOC111024361 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A1U8Q2021.1e-2351.20uncharacterized protein LOC109114208 OS=Nelumbo nucifera OX=4432 GN=LOC109114208... [more]
A0A2H9ZY122.5e-2342.86Uncharacterized protein OS=Apostasia shenzhenica OX=1088818 GN=AXF42_Ash020512 P... [more]
A0A1S3UKD47.4e-2347.45uncharacterized protein LOC106766267 OS=Vigna radiata var. radiata OX=3916 GN=LO... [more]
A0A1U8Q0002.2e-2248.00uncharacterized protein LOC109114250 OS=Nelumbo nucifera OX=4432 GN=LOC109114250... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005452.1Tan0005452.1mRNA