Tan0005382 (gene) Snake gourd v1

Overview
NameTan0005382
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionAuxin-responsive family protein
LocationLG01: 106209263 .. 106209727 (+)
RNA-Seq ExpressionTan0005382
SyntenyTan0005382
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTTTCAAGGCAATTGGGAAGGTCCTCTTCTTATAGCAGCTTGAGATCCAAATCAACAAGAGAAGATCTTTGGATTTCTGAAAGAAAAATGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGATTTTGATCATCATCAACAACTTGAAAAGGTCAGTGGCAGTAATGTAATTATATATGTTGGAAGCACAAGGAAGAGATATGCAATAAGTTCAAAGTACTTGACCCATCCTTTGTTAAATGCTTTGATTGACAAATCCAAGGCTAAGGCTAATGAAGATTATGATAATAATAATAATAATAATGTCATTTCAGTGAGATGTGAAGTTGTTCTGTTTGATCATCTTTTGTGGATGTTGGAAAACTCTGATCCAAATATCAGTTTTGATTCAAATTTGGAGGAATTGGCTGAGCTTTATGTGTTTTGA

mRNA sequence

ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTTTCAAGGCAATTGGGAAGGTCCTCTTCTTATAGCAGCTTGAGATCCAAATCAACAAGAGAAGATCTTTGGATTTCTGAAAGAAAAATGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGATTTTGATCATCATCAACAACTTGAAAAGGTCAGTGGCAGTAATGTAATTATATATGTTGGAATTGTTCTGTTTGATCATCTTTTGTGGATGTTGGAAAACTCTGATCCAAATATCAGTTTTGATTCAAATTTGGAGGAATTGGCTGAGCTTTATGTGTTTTGA

Coding sequence (CDS)

ATGAAGAAGATAAATTCTCTATTGAGGAAGTGCAAGAGCCTTTCAAGGCAATTGGGAAGGTCCTCTTCTTATAGCAGCTTGAGATCCAAATCAACAAGAGAAGATCTTTGGATTTCTGAAAGAAAAATGGAAGAAAAAGAAGAAGAAGAAGAAGAAGAAGATTTTGATCATCATCAACAACTTGAAAAGGTCAGTGGCAGTAATGTAATTATATATGTTGGAATTGTTCTGTTTGATCATCTTTTGTGGATGTTGGAAAACTCTGATCCAAATATCAGTTTTGATTCAAATTTGGAGGAATTGGCTGAGCTTTATGTGTTTTGA

Protein sequence

MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQLEKVSGSNVIIYVGIVLFDHLLWMLENSDPNISFDSNLEELAELYVF
Homology
BLAST of Tan0005382 vs. NCBI nr
Match: XP_023536060.1 (auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 146.4 bits (368), Expect = 1.5e-31
Identity = 89/152 (58.55%), Postives = 96/152 (63.16%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW+ +R MEE EE EE E+ + H+ 
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCDRTMEEHEEREEHEEREEHEG 60

Query: 61  LEKVSGSNVIIYVG---------------------------------------------I 108
            EKVSGSNVIIYVG                                             +
Sbjct: 61  FEKVSGSNVIIYVGSTRKRYAISSKYLSHPLLNALIDKSKPPKGNNEDDDDECISVRCEV 120

BLAST of Tan0005382 vs. NCBI nr
Match: KAG7024703.1 (hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.4 bits (355), Expect = 4.7e-30
Identity = 89/156 (57.05%), Postives = 96/156 (61.54%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           M K+NSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW+ ER MEE EE EE E+   H++
Sbjct: 1   MMKMNSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCERTMEEHEEHEEREEHGEHEE 60

Query: 61  ---LEKVSGSNVIIYVG------------------------------------------- 108
               E+VSGSNVIIYVG                                           
Sbjct: 61  REGFEEVSGSNVIIYVGSTRKRYTISSKYLSHPLLNALIDKSKPPKGNEDDDDDHKCISV 120

BLAST of Tan0005382 vs. NCBI nr
Match: XP_022135446.1 (uncharacterized protein LOC111007398 [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-29
Identity = 91/152 (59.87%), Postives = 97/152 (63.82%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-ISERKMEEKEEEEEEEDFDHHQ 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW I   KMEE+EEEEE+      Q
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDH---QQQ 60

Query: 61  QLEKVSGSNVIIYVG--------------------------------------------I 108
           QLEKV GSNVI+YVG                                            +
Sbjct: 61  QLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEV 120

BLAST of Tan0005382 vs. NCBI nr
Match: XP_038899559.1 (auxin-responsive protein SAUR78 [Benincasa hispida])

HSP 1 Score: 134.8 bits (338), Expect = 4.4e-28
Identity = 86/154 (55.84%), Postives = 96/154 (62.34%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           MKKIN LLRKCKSLSRQLGRSSSYSSLRSKSTREDLW+   KMEE++ E+++      QQ
Sbjct: 1   MKKINYLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCGTKMEEEDFEQQK------QQ 60

Query: 61  LEKVSGSNVIIYVG---------------------------------------------- 108
           LEKVSG++VI+YVG                                              
Sbjct: 61  LEKVSGNDVILYVGSTRKRYAISSKYLSHPLLNALIDKSKSKKLLANDDDEEEDCISVRC 120

BLAST of Tan0005382 vs. NCBI nr
Match: XP_011653970.1 (auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical protein Csa_012026 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 6.3e-27
Identity = 87/161 (54.04%), Postives = 95/161 (59.01%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW+ E+         +EEDF+  QQ
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK---------QEEDFE--QQ 60

Query: 61  LE-KVSGSNVIIYVG--------------------------------------------- 108
           +E KVSGSNVI+YVG                                             
Sbjct: 61  IEQKVSGSNVILYVGSTRKKYAINSKYLSHPLLNALIDKSKSKKLVDDDDDDDDGHEDDE 120

BLAST of Tan0005382 vs. ExPASy TrEMBL
Match: A0A0A0L464 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G607030 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.9e-35
Identity = 88/108 (81.48%), Postives = 95/108 (87.96%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW+ E+         +EEDF+  QQ
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVCEK---------QEEDFE--QQ 60

Query: 61  LE-KVSGSNVIIYVGIVLFDHLLWMLENSDPNISFDSNLEELAELYVF 108
           +E KVSGSNVI+YVGIVLFDHLLWMLENSDPNI+FDSNLEELAELYVF
Sbjct: 61  IEQKVSGSNVILYVGIVLFDHLLWMLENSDPNITFDSNLEELAELYVF 97

BLAST of Tan0005382 vs. ExPASy TrEMBL
Match: A0A6J1C0S4 (uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007398 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 8.6e-30
Identity = 91/152 (59.87%), Postives = 97/152 (63.82%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW-ISERKMEEKEEEEEEEDFDHHQ 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW I   KMEE+EEEEE+      Q
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWNICGTKMEEEEEEEEDH---QQQ 60

Query: 61  QLEKVSGSNVIIYVG--------------------------------------------I 108
           QLEKV GSNVI+YVG                                            +
Sbjct: 61  QLEKVRGSNVIMYVGSTRKKYVISSKFLSHPLVNALIDKSKSKSKSKSEDCEAISVRCEV 120

BLAST of Tan0005382 vs. ExPASy TrEMBL
Match: A0A1S3B9J9 (uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=3 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.4e-25
Identity = 84/163 (51.53%), Postives = 94/163 (57.67%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLW+      EK+EE+ E+ FD    
Sbjct: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWVC-----EKQEEDFEQQFD---- 60

Query: 61  LEKVSG-SNVIIYVG--------------------------------------------- 108
            +KVSG +NV++YVG                                             
Sbjct: 61  -QKVSGNNNVVLYVGSTRKKYAINSKYLGHPLLNALIDKSKSKKLVDDHDDEHEEHDDGD 120

BLAST of Tan0005382 vs. ExPASy TrEMBL
Match: B9RI47 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.8e-19
Identity = 71/131 (54.20%), Postives = 85/131 (64.89%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEED------ 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRE+LW      + KEE+EE +       
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREELW-----GDHKEEDEEHQSTLFVGS 60

Query: 61  -----------FDHH------QQLEKVSGSNV-IIYVGIVLFDHLLWMLENSDPNISFDS 108
                        H       Q+ ++  G  + ++   +VLFDHLLWMLEN+DPN+SFDS
Sbjct: 61  TRKRYVISSKYLSHPLVNALIQKSKQRQGEEILVVKCEVVLFDHLLWMLENADPNLSFDS 120

BLAST of Tan0005382 vs. ExPASy TrEMBL
Match: A0A2C9UHW2 (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G016100 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 4.4e-18
Identity = 69/130 (53.08%), Postives = 84/130 (64.62%), Query Frame = 0

Query: 1   MKKINSLLRKCKSLSRQLGRSSSYSSLRSKSTREDLWISERKMEEKEEEEEEEDFDHHQQ 60
           MKKIN +LRKCKSLSRQLGRSSSYSSLRSKSTRED+W ++ K+ + E+EE E  F    +
Sbjct: 1   MKKINLILRKCKSLSRQLGRSSSYSSLRSKSTREDVWGTD-KLHQDEQEEHETIFVGSTR 60

Query: 61  LEKVSGSN----------------------VIIYVGIVLFDHLLWMLENSDP-NISFDSN 108
              V  S                       +++   +VLFDHLLWMLEN+DP N+S DS 
Sbjct: 61  KRYVINSKYLSHPLVNALIEKSKQKHGEEVLVVKCEVVLFDHLLWMLENADPTNLSLDS- 120

BLAST of Tan0005382 vs. TAIR 10
Match: AT3G12955.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 47/141 (33.33%), Postives = 69/141 (48.94%), Query Frame = 0

Query: 3   KINSLLRKCKSLSRQLGRSSSYSSLRSKSTRED--------------------------- 62
           ++  +LR+CKS+S QLGRS SY+SLRSKS R D                           
Sbjct: 6   RLMMMLRRCKSVSTQLGRSYSYTSLRSKSARRDPQDHLQDVDQSPTPSMYQTVLVGRTKK 65

Query: 63  -LWISERKME--------EKEEEEEEEDFDHHQQLEKVSGSNVI-IYVGIVLFDHLLWML 107
              IS++ ++        EK++  EE+D +         GS +I +   +VLFDHLLWML
Sbjct: 66  PYLISKKHLKHPLLNALVEKQQRYEEDDNE--------DGSCIITVKCEVVLFDHLLWML 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_023536060.11.5e-3158.55auxin-responsive protein SAUR71 [Cucurbita pepo subsp. pepo][more]
KAG7024703.14.7e-3057.05hypothetical protein SDJN02_13521, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022135446.11.8e-2959.87uncharacterized protein LOC111007398 [Momordica charantia][more]
XP_038899559.14.4e-2855.84auxin-responsive protein SAUR78 [Benincasa hispida][more]
XP_011653970.16.3e-2754.04auxin-responsive protein SAUR78 [Cucumis sativus] >KAE8649782.1 hypothetical pro... [more]
Match NameE-valueIdentityDescription
A0A0A0L4648.9e-3581.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G607030 PE=4 SV=1[more]
A0A6J1C0S48.6e-3059.87uncharacterized protein LOC111007398 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A1S3B9J96.4e-2551.53uncharacterized protein LOC103487659 OS=Cucumis melo OX=3656 GN=LOC103487659 PE=... [more]
B9RI471.8e-1954.20Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1576420 PE=3 SV=1[more]
A0A2C9UHW24.4e-1853.08Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_14G016100 PE=3 SV=... [more]
Match NameE-valueIdentityDescription
AT3G12955.12.2e-0633.33SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31374:SF195EXPRESSED PROTEINcoord: 3..49
coord: 63..107
NoneNo IPR availablePANTHERPTHR31374AUXIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 3..49
coord: 63..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005382.1Tan0005382.1mRNA