Tan0005239 (gene) Snake gourd v1

Overview


Name	Tan0005239
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gibberellin-regulated family protein
Location	LG01: 115863453 .. 115866091 (-)
RNA-Seq Expression	Tan0005239
Synteny	Tan0005239

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAACATTGGCTTAATTTTTAGGTAGCTTTCTGTTTCTGATATCTCTCTGTTTCCTCGTCGTCTTTCGAGATGGCCATTTCTCTTCTTTCTAAATCTCTTTTCATGTCCCTTCTCCTAATTTCTTTGGTTGGAGCTCATGAAATAATGGTAACACTTTTAATCAACTTCAATCCTCGTTTATCTTACAAACCTCAATTCTCTGGTCTTTTTTCTTTTTTTTTTTTGGTAATATAAATACATAACCGACCAATATGAGTTGCAGGTGAACTCAATTGATGGTGTTGCAGCTGATCCTGTTAAGATTCTAAACATTGGTAAAATACCTATAGACTTTTTTTTTTCTTTATTTTCAGTATTTTGATAAACATAATCTTTTGATAATTATGGCAGGTTCCTAATTTTAGTCTAGCTTAATTGATAATTAAGATATATATACTCGACTAAAATGTTAGAAGGTCAAATTACTCTTCACTCTCATATATTTTTTAACTAAAAAAAAAGTTGCGTTACGCTTTACCATTTAGAAGAAAAGATTCTAAATTTGTATTAGAAGACAAAAAAAATTGGTTTCTTTTCCCCTTCTAGTTTTTTCAAAAATATAAAATGTATACATACATTATTTTATCTTTTCTTTACTTATAAAATGCATGACAAATATTTAAAACATAAACATAATATAATTTTTTAAAATATATTTAATTTAAAATAATTAATTTTCATGTAGAACTTTAGTTTCTTGATTTTAAATTTGTGAAAATAAAAAATAATAAACATTTACCAAATTAAAAACATTGTTTCTAATAAAAATAAAAATAAAAAGAGAATAAGAAAAGAAAATACTAACCCAAAATATATTTTTAAAGATAAAACTAGTATTTGTATTTCAATAGTACTATAATACTGTTAGATATAAACTCTAAATTAAACCATTTAAAAATTAGTGTTGTATTTATTTATATACCACAAATATTCTTCTCTTCTAATTAATATGTAGGTAGACATTATTTACATATAATATGATAGAAACATTTATTTAGTACCTCTGGAATAAAACTTAGAAGCAAAAACATTAGCAAATTCTAAGGATTAGAGTTTTTGTAAAGTAGTCAGAAATTTAACATATATTTTAATATGTGTTTTATTTATCAGATTGTGGAGGAGCTTGTGCCTGGAGATGCAAATTATCTTCAAGGCCGAACCTATGCAAGAGAGCATGTGGCACGTGCTGTGCACGTTGCAGCTGTGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCTTGCTACGCCCGCATGACCACTCGCGACGGCCGGCGAAAGTGTCCCTAAATCATCAACATCAATAATATCAGCTTCAATTCTACCTTCATAATATAATATATAATTAAGAGTGAAATTAATTATGTAAATTAATAACTGATATCTGGGAAAACCAGATTCTTCTCTATCTATCTCTTTTGTTTGTTGTTGTTGTCCCTATTTTATTATGTGTGAATTAGAACATGATATTAAATTATTCTGTACGTTACATGGACTTCAAAGAAAAGTGGGTTCGTTTTCGATTCTGTTTGTAAATAAAGTTAGAATTAATGGATGATGGATCAAATGCGTTTTGAACCGACCATATTAAATTTGGCATTTCAGTTTTGACAAATTATTGCAGCTTCTTTCTGTAAAGTTTGTGATATATATATGAAATGGTTGGATGAGCCACTACAATCTAGCTAGTAAAATAGATTAGCGTTTTATTAAGAAGTATGTAGATTTTTTAGTCTATATGCATCTATTTATACCTACTTTAATTCATTCTTGAGTTATACTCACGTTGGTATCACTTGATGCTATATCATTTTTTTATCAATTGTTTTCGCAACCTTTTATAATCTGAGAATATATGTTGAATACTTAACATAATATAATTAAAGTGTATTGTTATAGGTAAAATTGGACCAACAAGAATGAACAAGTCAAATAGCCAAAGAATGAGAAACTTAGTATCAAATCAAAGTGGGCCGAACCAAGACGGGATGAGACGAGAAGGATTGCCCGGGCTCCGACCCAAGCACGTGGTCGGCCTCGGCATAGGCCGAGGCCGACCAGGGTAGAGCCCTCCAATTTGGGCTCTACCCTAACCCAACATCCCAAGAAATGGGTCCGGGCTTGGGCCCCAGACCAAACCCATGGTCGGCCTCGGATGAGGCCGAAGCCAACCAGACCCGAAGTTGTATCCTGGTCTTCGTTCCAATCCTAGAAGACCCGTAAGCCTGATTCCAGCCCTGGTCCGACTTTTCCTTTTCCCAAAGGGCCAAGGAAACCCATCAGAGATGGAGGGGAGACTATTTAAACTCTCTCAATAAAAGAGAAGAGGTAAGTGAATTCTGGTGACCATTATACAAAACTCCTCTACAATTCTCTTCGAAACCCTCACTGACTTAGCCATCGGAGCTTGCGTGGCCTACACCACATCGGTGTCCAGATTTTCCTTGTCTTGCACGCTGCGTTCTTCCCCTGAGAACTACAAATTTACAGTCGTTGTCAAGTGGAGGTCAGGTGCATTCTCCTGTCCAAAATTTGGCAACAACATGTATAAATGTATATCATTTGCTTTTAAAATTGAGATATTTTACATTTCCTCG

mRNA sequence

GAAACATTGGCTTAATTTTTAGGTAGCTTTCTGTTTCTGATATCTCTCTGTTTCCTCGTCGTCTTTCGAGATGGCCATTTCTCTTCTTTCTAAATCTCTTTTCATGTCCCTTCTCCTAATTTCTTTGGTTGGAGCTCATGAAATAATGGTGAACTCAATTGATGGTGTTGCAGCTGATCCTGTTAAGATTCTAAACATTGATTGTGGAGGAGCTTGTGCCTGGAGATGCAAATTATCTTCAAGGCCGAACCTATGCAAGAGAGCATGTGGCACGTGCTGTGCACGTTGCAGCTGTGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCTTGCTACGCCCGCATGACCACTCGCGACGGCCGGCGAAAGTGTCCCTAAATCATCAACATCAATAATATCAGCTTCAATTCTACCTTCATAATATAATATATAATTAAGAGTGAAATTAATTATGTAAATTAATAACTGATATCTGGGAAAACCAGATTCTTCTCTATCTATCTCTTTTGTTTGTTGTTGTTGTCCCTATTTTATTATGTGTGAATTAGAACATGATATTAAATTATTCTGTACGTTACATGGACTTCAAAGAAAAGTGGGTTCGTTTTCGATTCTGTTTGTAAATAAAGTTAGAATTAATGGATGATGGATCAAATGCGTTTTGAACCGACCATATTAAATTTGGCATTTCAGTTTTGACAAATTATTGCAGCTTCTTTCTGTAAAGTTTGTGATATATATATGAAATGGTTGGATGAGCCACTACAATCTAGCTAGTAAAATAGATTAGCGTTTTATTAAGAAGTATGTAGATTTTTTAGTCTATATGCATCTATTTATACCTACTTTAATTCATTCTTGAGTTATACTCACGTTGGTATCACTTGATGCTATATCATTTTTTTATCAATTGTTTTCGCAACCTTTTATAATCTGAGAATATATGTTGAATACTTAACATAATATAATTAAAGTGTATTGTTATAGGTAAAATTGGACCAACAAGAATGAACAAGTCAAATAGCCAAAGAATGAGAAACTTAGTATCAAATCAAAGTGGGCCGAACCAAGACGGGATGAGACGAGAAGGATTGCCCGGGCTCCGACCCAAGCACGTGGTCGGCCTCGGCATAGGCCGAGGCCGACCAGGGTAGAGCCCTCCAATTTGGGCTCTACCCTAACCCAACATCCCAAGAAATGGGTCCGGGCTTGGGCCCCAGACCAAACCCATGGTCGGCCTCGGATGAGGCCGAAGCCAACCAGACCCGAAGTTGTATCCTGGTCTTCGTTCCAATCCTAGAAGACCCGTAAGCCTGATTCCAGCCCTGGTCCGACTTTTCCTTTTCCCAAAGGGCCAAGGAAACCCATCAGAGATGGAGGGGAGACTATTTAAACTCTCTCAATAAAAGAGAAGAGGTAAGTGAATTCTGGTGACCATTATACAAAACTCCTCTACAATTCTCTTCGAAACCCTCACTGACTTAGCCATCGGAGCTTGCGTGGCCTACACCACATCGGTGTCCAGATTTTCCTTGTCTTGCACGCTGCGTTCTTCCCCTGAGAACTACAAATTTACAGTCGTTGTCAAGTGGAGGTCAGGTGCATTCTCCTGTCCAAAATTTGGCAACAACATGTATAAATGTATATCATTTGCTTTTAAAATTGAGATATTTTACATTTCCTCG

Coding sequence (CDS)

ATGGCCATTTCTCTTCTTTCTAAATCTCTTTTCATGTCCCTTCTCCTAATTTCTTTGGTTGGAGCTCATGAAATAATGGTGAACTCAATTGATGGTGTTGCAGCTGATCCTGTTAAGATTCTAAACATTGATTGTGGAGGAGCTTGTGCCTGGAGATGCAAATTATCTTCAAGGCCGAACCTATGCAAGAGAGCATGTGGCACGTGCTGTGCACGTTGCAGCTGTGTGCCGCCGGGCACTTCCGGCGGCTACGAAACCTGCCCTTGCTACGCCCGCATGACCACTCGCGACGGCCGGCGAAAGTGTCCCTAA

Protein sequence

MAISLLSKSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP

Homology

[Close]

BLAST of Tan0005239 vs. ExPASy Swiss-Prot
Match: Q93X17 (Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.1e-26
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 6   LSKSLFMSLLLISLVGAHEIMVNSIDGVAADPV-----KILNIDCGGACAWRCKLSSRPN 65
           +SK+LF SLLL SL+   ++     D V ++ +         IDCGGACA RC+LSSRP 
Sbjct: 3   ISKALFASLLL-SLLLLEQVQSIQTDQVTSNAISEAAYSYKKIDCGGACAARCRLSSRPR 62

Query: 66  LCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           LC RACGTCCARC+CVPPGTSG  ETCPCYA +TT   +RKCP
Sbjct: 63  LCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104

[Close]

BLAST of Tan0005239 vs. ExPASy Swiss-Prot
Match: F4IQJ4 (Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-22
Identity = 56/99 (56.57%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 5   LLSKSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKR 64
           +L  SL +SLL++  V  H  MV S D           IDC   C  RC LSSRPNLC R
Sbjct: 6   VLLASLLISLLVLDFV--HADMVTSNDAP--------KIDCNSRCQERCSLSSRPNLCHR 65

Query: 65  ACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           ACGTCCARC+CV PGTSG Y+ CPCY  +TT  GRRKCP
Sbjct: 66  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Tan0005239 vs. ExPASy Swiss-Prot
Match: P46689 (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-21
Identity = 58/104 (55.77%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MAIS-LLSKSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRP 60
           MAIS  L  SL +SLL++ LV A        +G A        IDCG AC  RC+LS RP
Sbjct: 1   MAISKALIASLLISLLVLQLVQADVENSQKKNGYAK------KIDCGSACVARCRLSRRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
            LC RACGTCC RC+CVPPGT G Y+ C CYA +TT  GRRKCP
Sbjct: 61  RLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Tan0005239 vs. ExPASy Swiss-Prot
Match: P46687 (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.6e-20
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 8   KSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACG 67
           +S  + LL++  +   E+ V++ +        ++ IDCGG C  RC  SSRPNLC RAC 
Sbjct: 5   RSTLVLLLILFCLTTFELHVHAAEDSQVGE-GVVKIDCGGRCKGRCSKSSRPNLCLRACN 64

Query: 68  TCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           +CC RC+CVPPGT+G +  CPCYA +TTR GR KCP
Sbjct: 65  SCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Tan0005239 vs. ExPASy Swiss-Prot
Match: P46688 (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.4e-20
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 8   KSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACG 67
           +S  + LL+I  +  +E+ V++ DG       ++ IDCGG C  RC  SSR  LC RAC 
Sbjct: 5   RSTLVLLLIIVCLTTYELHVHAADGAKVGE-GVVKIDCGGRCKDRCSKSSRTKLCLRACN 64

Query: 68  TCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           +CC+RC+CVPPGTSG    CPCYA +TT  GR KCP
Sbjct: 65  SCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

[Close]

BLAST of Tan0005239 vs. NCBI nr
Match: XP_022982305.1 (gibberellin-regulated protein 1-like [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 81/107 (75.70%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MAIS LSK+L     MSLL++ LVGA E  VNSI GVAA P  + +IDCGGACA RCKLS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADE-KVNSIHGVAAHPANMQSIDCGGACASRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRP+LCKRACGTCCARC+CVPPGTSGGYETCPCYA MTT  GRRKCP
Sbjct: 61  SRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Tan0005239 vs. NCBI nr
Match: XP_022139249.1 (gibberellin-regulated protein 11-like [Momordica charantia])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 78/107 (72.90%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MA S+LSK L    FMSLL++  VGAHE     ++G  ADP KI NIDCGGACA RCKLS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHE----KVNGTTADPTKIQNIDCGGACAMRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRPNLCKRACGTCCARCSCVPPGTSGGY+ CPCYA +TTR GR KCP
Sbjct: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Tan0005239 vs. NCBI nr
Match: XP_023525231.1 (snakin-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 154.8 bits (390), Expect = 3.9e-34
Identity = 81/107 (75.70%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MAIS LSK+L     MSLL++ LVGA +  VNSI GVAA P  I +IDCGGACA RCKLS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVGADD-KVNSIHGVAAHPANIQSIDCGGACASRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRP+LCKRACGTCCARC+CVPPGTSGGYETCPCYA MTT  GRRKCP
Sbjct: 61  SRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Tan0005239 vs. NCBI nr
Match: XP_022940222.1 (gibberellin-regulated protein 1-like [Cucurbita moschata])

HSP 1 Score: 154.1 bits (388), Expect = 6.7e-34
Identity = 81/107 (75.70%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MAIS LSK+L     MSLL++ LV A E  VNSI GVAA P  I +IDCGGACA RCKLS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADE-EVNSIHGVAAHPANIQSIDCGGACASRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRPNLCKRACGTCCARC+CVPPGTSGGYETCPCYA +TT  GRRKCP
Sbjct: 61  SRPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Tan0005239 vs. NCBI nr
Match: KAG6608594.1 (Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.5 bits (384), Expect = 1.9e-33
Identity = 80/107 (74.77%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MAIS LSK+L     MSLL++ LV A E  VNSI GVAA P  I +IDCGGACA RCKLS
Sbjct: 1   MAISGLSKALLTCVLMSLLVVHLVAADE-KVNSIHGVAAHPANIQSIDCGGACASRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRP+LCKRACGTCCARC+CVPPGTSGGYETCPCYA +TT  GRRKCP
Sbjct: 61  SRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Tan0005239 vs. ExPASy TrEMBL
Match: A0A6J1J2A8 (gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 81/107 (75.70%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MAIS LSK+L     MSLL++ LVGA E  VNSI GVAA P  + +IDCGGACA RCKLS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVGADE-KVNSIHGVAAHPANMQSIDCGGACASRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRP+LCKRACGTCCARC+CVPPGTSGGYETCPCYA MTT  GRRKCP
Sbjct: 61  SRPHLCKRACGTCCARCNCVPPGTSGGYETCPCYASMTTHGGRRKCP 106

[Close]

BLAST of Tan0005239 vs. ExPASy TrEMBL
Match: A0A6J1CCE1 (gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC111010205 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.9e-34
Identity = 78/107 (72.90%), Postives = 85/107 (79.44%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MA S+LSK L    FMSLL++  VGAHE     ++G  ADP KI NIDCGGACA RCKLS
Sbjct: 1   MANSVLSKPLITCVFMSLLVLCFVGAHE----KVNGTTADPTKIQNIDCGGACAMRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRPNLCKRACGTCCARCSCVPPGTSGGY+ CPCYA +TTR GR KCP
Sbjct: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYDACPCYAHITTRGGRPKCP 103

[Close]

BLAST of Tan0005239 vs. ExPASy TrEMBL
Match: A0A6J1FJ01 (gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111445908 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.2e-34
Identity = 81/107 (75.70%), Postives = 87/107 (81.31%), Query Frame = 0


Query: 1   MAISLLSKSL----FMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLS 60
           MAIS LSK+L     MSLL++ LV A E  VNSI GVAA P  I +IDCGGACA RCKLS
Sbjct: 1   MAISGLSKALVTCVLMSLLVVHLVAADE-EVNSIHGVAAHPANIQSIDCGGACASRCKLS 60

Query: 61  SRPNLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           SRPNLCKRACGTCCARC+CVPPGTSGGYETCPCYA +TT  GRRKCP
Sbjct: 61  SRPNLCKRACGTCCARCNCVPPGTSGGYETCPCYASLTTHGGRRKCP 106

[Close]

BLAST of Tan0005239 vs. ExPASy TrEMBL
Match: A0A5D3E7E4 (Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G008070 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 12  MSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACGTCCA 71
           MSLL++  V A +++V    GVAA P    NI+CGGACA RCKLSSRPNLCKRACGTCCA
Sbjct: 13  MSLLVLCFVEADDMVV----GVAASPTLTQNINCGGACASRCKLSSRPNLCKRACGTCCA 72

Query: 72  RCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           RCSCVPPGTSG Y  CPCYA++TT  GRRKCP
Sbjct: 73  RCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Tan0005239 vs. ExPASy TrEMBL
Match: A0A1S3CSM7 (gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.7e-28
Identity = 65/92 (70.65%), Postives = 73/92 (79.35%), Query Frame = 0


Query: 12  MSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACGTCCA 71
           MSLL++  V A +++V    GVAA P    NI+CGGACA RCKLSSRPNLCKRACGTCCA
Sbjct: 13  MSLLVLCFVEADDMVV----GVAASPTLTQNINCGGACASRCKLSSRPNLCKRACGTCCA 72

Query: 72  RCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           RCSCVPPGTSG Y  CPCYA++TT  GRRKCP
Sbjct: 73  RCSCVPPGTSGNYGACPCYAKLTTHGGRRKCP 100

[Close]

BLAST of Tan0005239 vs. TAIR 10
Match: AT2G18420.1 (Gibberellin-regulated family protein )

HSP 1 Score: 105.5 bits (262), Expect = 2.5e-23
Identity = 56/99 (56.57%), Postives = 63/99 (63.64%), Query Frame = 0


Query: 5   LLSKSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKR 64
           +L  SL +SLL++  V  H  MV S D           IDC   C  RC LSSRPNLC R
Sbjct: 6   VLLASLLISLLVLDFV--HADMVTSNDAP--------KIDCNSRCQERCSLSSRPNLCHR 65

Query: 65  ACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           ACGTCCARC+CV PGTSG Y+ CPCY  +TT  GRRKCP
Sbjct: 66  ACGTCCARCNCVAPGTSGNYDKCPCYGSLTTHGGRRKCP 94

[Close]

BLAST of Tan0005239 vs. TAIR 10
Match: AT1G75750.1 (GAST1 protein homolog 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 58/104 (55.77%), Postives = 66/104 (63.46%), Query Frame = 0


Query: 1   MAIS-LLSKSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRP 60
           MAIS  L  SL +SLL++ LV A        +G A        IDCG AC  RC+LS RP
Sbjct: 1   MAISKALIASLLISLLVLQLVQADVENSQKKNGYAK------KIDCGSACVARCRLSRRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
            LC RACGTCC RC+CVPPGT G Y+ C CYA +TT  GRRKCP
Sbjct: 61  RLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98

[Close]

BLAST of Tan0005239 vs. TAIR 10
Match: AT1G75750.2 (GAST1 protein homolog 1 )

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-22
Identity = 59/104 (56.73%), Postives = 67/104 (64.42%), Query Frame = 0


Query: 1   MAIS-LLSKSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRP 60
           MAIS  L  SL +SLL++ LV A E      +G A        IDCG AC  RC+LS RP
Sbjct: 1   MAISKALIASLLISLLVLQLVQADENSQKK-NGYAK------KIDCGSACVARCRLSRRP 60

Query: 61  NLCKRACGTCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
            LC RACGTCC RC+CVPPGT G Y+ C CYA +TT  GRRKCP
Sbjct: 61  RLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 97

[Close]

BLAST of Tan0005239 vs. TAIR 10
Match: AT4G09600.1 (GAST1 protein homolog 3 )

HSP 1 Score: 99.4 bits (246), Expect = 1.8e-21
Identity = 47/96 (48.96%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 8   KSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACG 67
           +S  + LL++  +   E+ V++ +        ++ IDCGG C  RC  SSRPNLC RAC 
Sbjct: 5   RSTLVLLLILFCLTTFELHVHAAEDSQVGE-GVVKIDCGGRCKGRCSKSSRPNLCLRACN 64

Query: 68  TCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           +CC RC+CVPPGT+G +  CPCYA +TTR GR KCP
Sbjct: 65  SCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99

[Close]

BLAST of Tan0005239 vs. TAIR 10
Match: AT4G09610.1 (GAST1 protein homolog 2 )

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-21
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 0


Query: 8   KSLFMSLLLISLVGAHEIMVNSIDGVAADPVKILNIDCGGACAWRCKLSSRPNLCKRACG 67
           +S  + LL+I  +  +E+ V++ DG       ++ IDCGG C  RC  SSR  LC RAC 
Sbjct: 5   RSTLVLLLIIVCLTTYELHVHAADGAKVGE-GVVKIDCGGRCKDRCSKSSRTKLCLRACN 64

Query: 68  TCCARCSCVPPGTSGGYETCPCYARMTTRDGRRKCP 104
           +CC+RC+CVPPGTSG    CPCYA +TT  GR KCP
Sbjct: 65  SCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99

The following BLAST results are available for this feature:

BLAST of Tan0005239 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93X17	9.1e-26	58.25	Snakin-2 OS=Solanum tuberosum OX=4113 GN=SN2 PE=1 SV=1	[more]
F4IQJ4	3.6e-22	56.57	Gibberellin-regulated protein 11 OS=Arabidopsis thaliana OX=3702 GN=GASA11 PE=3 ...	[more]
P46689	1.8e-21	55.77	Gibberellin-regulated protein 1 OS=Arabidopsis thaliana OX=3702 GN=GASA1 PE=2 SV...	[more]
P46687	2.6e-20	48.96	Gibberellin-regulated protein 3 OS=Arabidopsis thaliana OX=3702 GN=GASA3 PE=2 SV...	[more]
P46688	3.4e-20	50.00	Gibberellin-regulated protein 2 OS=Arabidopsis thaliana OX=3702 GN=GASA2 PE=2 SV...	[more]

BLAST of Tan0005239 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022982305.1	3.9e-34	75.70	gibberellin-regulated protein 1-like [Cucurbita maxima]	[more]
XP_022139249.1	3.9e-34	72.90	gibberellin-regulated protein 11-like [Momordica charantia]	[more]
XP_023525231.1	3.9e-34	75.70	snakin-2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022940222.1	6.7e-34	75.70	gibberellin-regulated protein 1-like [Cucurbita moschata]	[more]
KAG6608594.1	1.9e-33	74.77	Snakin-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037911.1 Snakin-2...	[more]

BLAST of Tan0005239 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J2A8	1.9e-34	75.70	gibberellin-regulated protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481179...	[more]
A0A6J1CCE1	1.9e-34	72.90	gibberellin-regulated protein 11-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1FJ01	3.2e-34	75.70	gibberellin-regulated protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC1114459...	[more]
A0A5D3E7E4	2.7e-28	70.65	Gibberellin-regulated protein 11-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3CSM7	2.7e-28	70.65	gibberellin-regulated protein 11-like OS=Cucumis melo OX=3656 GN=LOC103503872 PE...	[more]

BLAST of Tan0005239 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G18420.1	2.5e-23	56.57	Gibberellin-regulated family protein	[more]
AT1G75750.1	1.3e-22	55.77	GAST1 protein homolog 1	[more]
AT1G75750.2	1.3e-22	56.73	GAST1 protein homolog 1	[more]
AT4G09600.1	1.8e-21	48.96	GAST1 protein homolog 3	[more]
AT4G09610.1	2.4e-21	50.00	GAST1 protein homolog 2	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003854	Gibberellin regulated protein	PFAM	PF02704	GASA	coord: 44..103 e-value: 3.1E-20 score: 72.1
None	No IPR available	PANTHER	PTHR23201	EXTENSIN, PROLINE-RICH PROTEIN	coord: 7..103
None	No IPR available	PANTHER	PTHR23201:SF67	SNAKIN-2-LIKE	coord: 7..103

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005239.1	Tan0005239.1	mRNA