Tan0005238 (gene) Snake gourd v1

Overview
NameTan0005238
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionNACHT, LRR and PYD domains-containing protein 5 isoform X3
LocationLG06: 17726245 .. 17726621 (-)
RNA-Seq ExpressionTan0005238
SyntenyTan0005238
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGAAGCTCCTTCGCTGCTCTTTCTGTGCACAGCCCTAGTAAGGGACGAAATTGTTCAAAGTAATCATCTCCATAGTTCTTGTGTTACTTATACTCTGTTCCTCCGTATTCGTTTCTCTTCCTTGTTTTCTTAATGCGTCGCTCTCTTTGACTGTTAGGGGATGACGTTCCACCGGCTATCTATGACCTTCCTCCTCACCTGTTGGATGCTCTGGCTTCGCAGCTGCCACCGTTGGCTTTACAGAATTTACAGTCAGGAATGTACGTCGCCCCACCCCGATTAAGTTGTTATCTTTTATTACCATTTAGCTTGGTTGAAGGCTGTCAAATCCATGTGGTTGGTAGTGTGCACGAGTATTGCATTGAAAATTGA

mRNA sequence

ATGGCGGAAGCTCCTTCGCTGCTCTTTCTGTGCACAGCCCTAGTAAGGGACGAAATTGTTCAAAGGGATGACGTTCCACCGGCTATCTATGACCTTCCTCCTCACCTGTTGGATGCTCTGGCTTCGCAGCTGCCACCGTTGGCTTTACAGAATTTACAGTCAGGAATGTACGTCGCCCCACCCCGATTAAGTTGTTATCTTTTATTACCATTTAGCTTGGTTGAAGGCTGTCAAATCCATGTGGTTGGTAGTGTGCACGAGTATTGCATTGAAAATTGA

Coding sequence (CDS)

ATGGCGGAAGCTCCTTCGCTGCTCTTTCTGTGCACAGCCCTAGTAAGGGACGAAATTGTTCAAAGGGATGACGTTCCACCGGCTATCTATGACCTTCCTCCTCACCTGTTGGATGCTCTGGCTTCGCAGCTGCCACCGTTGGCTTTACAGAATTTACAGTCAGGAATGTACGTCGCCCCACCCCGATTAAGTTGTTATCTTTTATTACCATTTAGCTTGGTTGAAGGCTGTCAAATCCATGTGGTTGGTAGTGTGCACGAGTATTGCATTGAAAATTGA

Protein sequence

MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGMYVAPPRLSCYLLLPFSLVEGCQIHVVGSVHEYCIEN
Homology
BLAST of Tan0005238 vs. NCBI nr
Match: XP_022954282.1 (uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata] >XP_022954283.1 uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata])

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-20
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
          MAEAPSLLFLCTALVRDEIV+RDDVPPA+YDLPP LLDALASQLPPLALQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 56

BLAST of Tan0005238 vs. NCBI nr
Match: KAG7014586.1 (T-complex-associated testis-expressed protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-20
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1    MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
            MAEAPSLLFLCTALVRDEIV+RDDVPPA+YDLPP LLDALASQLPPLALQNLQSGM
Sbjct: 1083 MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 1138

BLAST of Tan0005238 vs. NCBI nr
Match: KAG6576068.1 (CLIP-associated protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-20
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1    MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
            MAEAPSLLFLCTALVRDEIV+RDDVPPA+YDLPP LLDALASQLPPLALQNLQSGM
Sbjct: 1115 MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 1170

BLAST of Tan0005238 vs. NCBI nr
Match: XP_023549040.1 (uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023549041.1 uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 106.3 bits (264), Expect = 1.4e-19
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
          MAEAPSLLFLCTALVRDEIV+RDDVPPA+YDLPP LLD LASQLPPLALQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDTLASQLPPLALQNLQSGM 56

BLAST of Tan0005238 vs. NCBI nr
Match: KAA0050632.1 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa] >TYK07801.1 NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.2e-18
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGMYVAP 60
          MAEAPSLL LC AL+ DEIVQRDDVPP++YDLPP LLD LA QLPPLAL NLQSGMYV P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

BLAST of Tan0005238 vs. ExPASy TrEMBL
Match: A0A6J1GQL7 (uncharacterized protein LOC111456584 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111456584 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 53/56 (94.64%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
          MAEAPSLLFLCTALVRDEIV+RDDVPPA+YDLPP LLDALASQLPPLALQNLQSGM
Sbjct: 1  MAEAPSLLFLCTALVRDEIVRRDDVPPAVYDLPPDLLDALASQLPPLALQNLQSGM 56

BLAST of Tan0005238 vs. ExPASy TrEMBL
Match: A0A0A0K6N3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G330380 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.4e-20
Identity = 52/61 (85.25%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGMYVAP 60
          MAEAPSLL LC ALVRDEI+QRDDVPPA+YDLPPHLLD LA +LPPLAL+NLQSGMYV P
Sbjct: 1  MAEAPSLLSLCIALVRDEILQRDDVPPALYDLPPHLLDTLALRLPPLALRNLQSGMYVFP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

BLAST of Tan0005238 vs. ExPASy TrEMBL
Match: A0A5D3C7E3 (NACHT, LRR and PYD domains-containing protein 5 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00940 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 5.9e-19
Identity = 50/61 (81.97%), Postives = 53/61 (86.89%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGMYVAP 60
          MAEAPSLL LC AL+ DEIVQRDDVPP++YDLPP LLD LA QLPPLAL NLQSGMYV P
Sbjct: 1  MAEAPSLLSLCIALITDEIVQRDDVPPSLYDLPPDLLDTLALQLPPLALHNLQSGMYVLP 60

Query: 61 P 62
          P
Sbjct: 61 P 61

BLAST of Tan0005238 vs. ExPASy TrEMBL
Match: A0A6J1JTJ2 (uncharacterized protein LOC111488203 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488203 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 50/56 (89.29%), Postives = 54/56 (96.43%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
          MAEAPSLL LCTALVRDEIV+RDDVPPA+Y+LPP LLDALASQLPPLAL+NLQSGM
Sbjct: 1  MAEAPSLLSLCTALVRDEIVRRDDVPPAVYNLPPDLLDALASQLPPLALENLQSGM 56

BLAST of Tan0005238 vs. ExPASy TrEMBL
Match: A0A1S3CFT7 (uncharacterized protein LOC103500467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103500467 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-16
Identity = 48/56 (85.71%), Postives = 49/56 (87.50%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
          MAEAPSLL LC ALV DEIVQRDDVPPA+YDLPP LLD LA QLPPLAL NLQSGM
Sbjct: 1  MAEAPSLLSLCIALVTDEIVQRDDVPPALYDLPPDLLDTLALQLPPLALHNLQSGM 56

BLAST of Tan0005238 vs. TAIR 10
Match: AT2G20210.1 (RNI-like superfamily protein )

HSP 1 Score: 53.1 bits (126), Expect = 1.3e-07
Identity = 24/56 (42.86%), Postives = 37/56 (66.07%), Query Frame = 0

Query: 1  MAEAPSLLFLCTALVRDEIVQRDDVPPAIYDLPPHLLDALASQLPPLALQNLQSGM 57
          M +APSL FLC   ++ ++++ D+  P +Y+LP  LLD + + LP LALQ  Q+ M
Sbjct: 1  MTKAPSLAFLCIQSLKIQLLESDNPIPDLYELPSELLDGIVAHLPALALQKFQTNM 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022954282.14.9e-2094.64uncharacterized protein LOC111456584 isoform X1 [Cucurbita moschata] >XP_0229542... [more]
KAG7014586.14.9e-2094.64T-complex-associated testis-expressed protein 1 [Cucurbita argyrosperma subsp. a... [more]
KAG6576068.14.9e-2094.64CLIP-associated protein, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_023549040.11.4e-1992.86uncharacterized protein LOC111807525 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
KAA0050632.11.2e-1881.97NACHT, LRR and PYD domains-containing protein 5 isoform X3 [Cucumis melo var. ma... [more]
Match NameE-valueIdentityDescription
A0A6J1GQL72.4e-2094.64uncharacterized protein LOC111456584 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
A0A0A0K6N32.4e-2085.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G330380 PE=4 SV=1[more]
A0A5D3C7E35.9e-1981.97NACHT, LRR and PYD domains-containing protein 5 isoform X3 OS=Cucumis melo var. ... [more]
A0A6J1JTJ21.7e-1889.29uncharacterized protein LOC111488203 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A1S3CFT71.2e-1685.71uncharacterized protein LOC103500467 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
Match NameE-valueIdentityDescription
AT2G20210.11.3e-0742.86RNI-like superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0005238.1Tan0005238.1mRNA