Tan0005204 (gene) Snake gourd v1

Overview


Name	Tan0005204
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S acidic ribosomal protein P3
Location	LG08: 10896912 .. 10898349 (+)
RNA-Seq Expression	Tan0005204
Synteny	Tan0005204

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTAGCTAGGGTTTCCTCTCCTCAACATAAAAACCAAACCCCAATCCGCAGAAGAGCCGTCCAATCCAACTCTCTCGCTTTCTTCTTCGCATTTCGCTTCAAGCAAAATCCCCGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTTGAAGGCTCCGCCGCTTCCACCTATGAGCTCCAGAGGAAACTCGTTCAGACTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCTTACATCTCTCCCAGCTCCGCCGTTTTCCAGGTATTCATTGTTTTCTCTGCAGAATTAGGGGAAAAGTTGTGGTGCTTATAATTACATGTTCTGTTTTACCCGTTCTTGTGGACTCTTCGAATTCTTTTGATTTTCTTCCTTGATTGTTCCCGATCTGATGCGCTTGCTCTGTTTGATTTGCATACTCCGTGTTTAATTGATTGTATCTCTTTACTTCGATGTACAATGATGAGATAATCTTTTTCTAGTTTTTCCCTATCTGTTCTATGTGTTAGTCTATTTTTGATCTGTAGGTTGGTGTTTGACAATAGCGATTATGGGGTTCTGGTTGTATAATCCATTAAGAAGTTATATTGAATTACTCCATTGTTGGCAATCATAATTTTATTATGTTCGTTGGTGAATTCCCTGATTAGTTTATAACTTGTCCGCATTTGCCCTAATTTTTACATTGAATTTAAAATTCTTTGAATAAGAAAATCTAATATTGTGTGATTCCTTGTTGGAGCTCTCTTGAGTTAGCAAAGTATTTGGAACAAGTTGGTGTTGGGTCGTCTTTGGAACTCTATTTATGATATCTCCTCAAGTATCTCCCTGTTATGTGTGCCTATCCTAAACCTTATTGTTTCAGGTGATCATTGGTGGCGGTAGCGGCGGTGGTTTCGTTGGTGGTGGCGCAGCAGCTGCAGCTGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGCTGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTTTTTGATTAGTTGGTATAATTGCTGGTTATTGTTTATCAATCTCACAATTTTTAGCGCTCAACTTTTCTCTTCAGGAAATTATGTCTATGCTTTTACTTGAATTTGCCTGTTCAGTTGCTGTTCTTGTTAAGGACATGAAATTTTGCTACTGACCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTTGGGACTTGTGTTTGAGAAGTTCTTTCTGATTACCTGTCATTGATTTATCTTTTAGTTGGTGATCTTCTAGGCAGTTGTTTTATTTTCTATCTCATTTTGGTTTAGGGCACAAATGATTGAATTGAGTTTAGTGATATTGAATTTTTTGGTTCGAATCA

mRNA sequence

CTTTAGCTAGGGTTTCCTCTCCTCAACATAAAAACCAAACCCCAATCCGCAGAAGAGCCGTCCAATCCAACTCTCTCGCTTTCTTCTTCGCATTTCGCTTCAAGCAAAATCCCCGTTCGAAGATCAAACAATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTTGAAGGCTCCGCCGCTTCCACCTATGAGCTCCAGAGGAAACTCGTTCAGACTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCTTACATCTCTCCCAGCTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTAGCGGCGGTGGTTTCGTTGGTGGTGGCGCAGCAGCTGCAGCTGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGCTGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTTTTTGATTAGTTGGTATAATTGCTGGTTATTGTTTATCAATCTCACAATTTTTAGCGCTCAACTTTTCTCTTCAGGAAATTATGTCTATGCTTTTACTTGAATTTGCCTGTTCAGTTGCTGTTCTTGTTAAGGACATGAAATTTTGCTACTGACCTTTGTTAAATGGTTGAGAATTAGATGTGTTCTTTTGGGACTTGTGTTTGAGAAGTTCTTTCTGATTACCTGTCATTGATTTATCTTTTAGTTGGTGATCTTCTAGGCAGTTGTTTTATTTTCTATCTCATTTTGGTTTAGGGCACAAATGATTGAATTGAGTTTAGTGATATTGAATTTTTTGGTTCGAATCA

Coding sequence (CDS)

ATGGGAGTTTTCACCTTCGTCTGTCGGAGCTCCGGTGGCGAGTGGACCGCCAAGCAGTACTCCGGCGACCTTGAAGGCTCCGCCGCTTCCACCTATGAGCTCCAGAGGAAACTCGTTCAGACTGCTCTCTCCGTCGATTCCTCCGGTGGCGTTCAGTCCTCCTTCTCTTACATCTCTCCCAGCTCCGCCGTTTTCCAGGTGATCATTGGTGGCGGTAGCGGCGGTGGTTTCGTTGGTGGTGGCGCAGCAGCTGCAGCTGCCCCTGCTGGAGGAGCTGCACCAGCTGCAGCTGAAGCCCCAGCTGAGAAGAAGGAAGAGGTGAAGGAAGAGAGTGATGATGATGACCTTGGCCTATCACTTTTTGATTAG

Protein sequence

MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISPSSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSLFD

Homology

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BLAST of Tan0005204 vs. ExPASy Swiss-Prot
Match: Q9LVC9 (60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 2.4e-33
Identity = 82/121 (67.77%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVF+FVC+S GGEWTAKQ+ GDLE SA+STY+LQRKLVQTALS DSSGGVQSSFS +SP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVF V+IGGG GGGF  GG AAA    GG A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 119

Query: 121 F 122
           F
Sbjct: 121 F 119

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BLAST of Tan0005204 vs. ExPASy Swiss-Prot
Match: P56724 (60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701400 PE=3 SV=3)

HSP 1 Score: 135.6 bits (340), Expect = 3.8e-31
Identity = 86/124 (69.35%), Postives = 95/124 (76.61%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGV+TFVCRSSG EWTAKQ  G+LE SAA+ YELQR+LV  A + DS+ GVQSSFS +SP
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRLVAAASAADSAAGVQSSFSMVSP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAP--AEKKEEVKEESDDDDLGL 120
           SSAVFQVIIG   GG  +GGGAAA AA  G    AAAEAP   EKKEE KEES +DDLG 
Sbjct: 61  SSAVFQVIIGAVGGGAAIGGGAAAGAASGG----AAAEAPKAEEKKEEEKEES-EDDLGF 119

Query: 121 SLFD 123
           SLFD
Sbjct: 121 SLFD 119

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BLAST of Tan0005204 vs. ExPASy Swiss-Prot
Match: Q9SVZ6 (60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.1e-30
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVC++ GG W+AKQ+ G+LE SA+STYELQRKLVQ +LS DSSGGVQSSFS +SP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVI+GGG GGGF  GGAA++    GGA  AAA    ++K++ + E ++ D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS---GGGAGEAAAAPKEDEKKKEESEEEEGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of Tan0005204 vs. ExPASy Swiss-Prot
Match: O24413 (60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3)

HSP 1 Score: 128.6 bits (322), Expect = 4.7e-29
Identity = 76/123 (61.79%), Postives = 94/123 (76.42%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGV+TFVCR++GGEWTAKQ+SG++E SAA+ YELQR+LV  A + DS  GVQSSFS ++P
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRLVAAASAADSRYGVQSSFSMVTP 60

Query: 61  SSAVFQVIIGG-GSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLS 120
           SSAVFQVI+G  G G   V GG    AA +GG   AAAEAP E+K+E ++E  DDD+G S
Sbjct: 61  SSAVFQVIVGAVGGGAMMVSGGGGGGAAASGG---AAAEAPKEEKKEEEKEESDDDMGFS 120

Query: 121 LFD 123
           LFD
Sbjct: 121 LFD 120

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BLAST of Tan0005204 vs. ExPASy Swiss-Prot
Match: P52855 (60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.1e-04
Identity = 39/68 (57.35%), Postives = 44/68 (64.71%), Query Frame = 0


Query: 55  FSYISPSSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDD 114
           F+ +     V  +I+  GSGG   G    AAAAPAGGAA AAA A  EKKEE KEES DD
Sbjct: 46  FAKLLEKRNVEDLILSVGSGG---GAAPVAAAAPAGGAAAAAAPAVEEKKEEAKEES-DD 105

Query: 115 DLGLSLFD 123
           D+G SLFD
Sbjct: 106 DMGFSLFD 109

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BLAST of Tan0005204 vs. NCBI nr
Match: XP_038889531.1 (60S acidic ribosomal protein P3-2 [Benincasa hispida])

HSP 1 Score: 198.4 bits (503), Expect = 3.7e-47
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGG+WTA QYSGDLEGSA STYELQRKLVQ+ALSVDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVI+GGG GGGF+GGG  AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGGGGAAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 122

[Close]

BLAST of Tan0005204 vs. NCBI nr
Match: XP_004148320.1 (60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical protein Csa_021210 [Cucumis sativus])

HSP 1 Score: 195.3 bits (495), Expect = 3.1e-46
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGG+WTA QYSGDLEGSA STYELQRKLVQ+ALSVDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           SSAVFQVI+GGGSGGGF  GG  AAAAPAGGAAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGG-GAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

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BLAST of Tan0005204 vs. NCBI nr
Match: XP_008451467.1 (PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa] >TYK01401.1 60S acidic ribosomal protein P3-2 [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 5.3e-46
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGG+WTA QYSGDLEGSA STYELQRKLVQ+ALSVDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVI+GGG GGGF+GGG  AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Tan0005204 vs. NCBI nr
Match: XP_022153281.1 (60S acidic ribosomal protein P3-2 [Momordica charantia])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 111/122 (90.98%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG EWTAKQYSGDLEGSAASTYELQRKLVQTAL+VDSSGGVQSSFSYISP
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIIGGG GGGF+ GG AAAAAP+GGAAP AAEAPAEKKEE KEES DDDLGLSL
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAP-AAEAPAEKKEEEKEES-DDDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Tan0005204 vs. NCBI nr
Match: XP_022929782.1 (60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S acidic ribosomal protein P3-2-like [Cucurbita maxima] >XP_023521367.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >XP_023545674.1 60S acidic ribosomal protein P3-2-like [Cucurbita pepo subsp. pepo] >KAG6598882.1 60S acidic ribosomal protein P3-2, partial [Cucurbita argyrosperma subsp. sororia] >KAG7029833.1 60S acidic ribosomal protein P3-2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 187.6 bits (475), Expect = 6.5e-44
Identity = 104/122 (85.25%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTF+CRSSGG+WTA QYSGDLEGSA STY+LQR LVQ  LSVD SGGVQSSFSY++P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIIGG SGGGF+GGG  AAAAPAGG APAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGG-GAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Tan0005204 vs. ExPASy TrEMBL
Match: A0A0A0LJB2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.5e-46
Identity = 110/122 (90.16%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGG+WTA QYSGDLEGSA STYELQRKLVQ+ALSVDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           SSAVFQVI+GGGSGGGF  GG  AAAAPAGGAAPAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  SSAVFQVIVGGGSGGGFSAGG-GAAAAPAGGAAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Tan0005204 vs. ExPASy TrEMBL
Match: A0A5D3BNN6 (60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00960 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGG+WTA QYSGDLEGSA STYELQRKLVQ+ALSVDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVI+GGG GGGF+GGG  AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Tan0005204 vs. ExPASy TrEMBL
Match: A0A1S3BRK9 (60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 2.6e-46
Identity = 108/122 (88.52%), Postives = 116/122 (95.08%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSGG+WTA QYSGDLEGSA STYELQRKLVQ+ALSVDSSGGVQSSFS+I+P
Sbjct: 1   MGVFTFVCRSSGGKWTANQYSGDLEGSADSTYELQRKLVQSALSVDSSGGVQSSFSFITP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVI+GGG GGGF+GGG  AAAAPAGG APAAAEAPAEKKEEVKEESDD+DLGLSL
Sbjct: 61  TSAVFQVIVGGGGGGGFIGGG--AAAAPAGGDAPAAAEAPAEKKEEVKEESDDEDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Tan0005204 vs. ExPASy TrEMBL
Match: A0A6J1DK62 (60S acidic ribosomal protein P3-2 OS=Momordica charantia OX=3673 GN=LOC111020814 PE=4 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.7e-46
Identity = 111/122 (90.98%), Postives = 115/122 (94.26%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVCRSSG EWTAKQYSGDLEGSAASTYELQRKLVQTAL+VDSSGGVQSSFSYISP
Sbjct: 1   MGVFTFVCRSSGAEWTAKQYSGDLEGSAASTYELQRKLVQTALAVDSSGGVQSSFSYISP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIIGGG GGGF+ GG AAAAAP+GGAAP AAEAPAEKKEE KEES DDDLGLSL
Sbjct: 61  TSAVFQVIIGGGGGGGFISGGGAAAAAPSGGAAP-AAEAPAEKKEEEKEES-DDDLGLSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 120

[Close]

BLAST of Tan0005204 vs. ExPASy TrEMBL
Match: A0A6J1KB28 (60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC111492258 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 3.1e-44
Identity = 104/122 (85.25%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTF+CRSSGG+WTA QYSGDLEGSA STY+LQR LVQ  LSVD SGGVQSSFSY++P
Sbjct: 1   MGVFTFICRSSGGKWTANQYSGDLEGSADSTYDLQRTLVQNVLSVDCSGGVQSSFSYVTP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVIIGG SGGGF+GGG  AAAAPAGG APAAAEAPAEKKEEVKEESDDDDLG SL
Sbjct: 61  TSAVFQVIIGGSSGGGFIGGG-GAAAAPAGGDAPAAAEAPAEKKEEVKEESDDDDLGFSL 120

Query: 121 FD 123
           FD
Sbjct: 121 FD 121

[Close]

BLAST of Tan0005204 vs. TAIR 10
Match: AT5G57290.1 (60S acidic ribosomal protein family )

HSP 1 Score: 142.9 bits (359), Expect = 1.7e-34
Identity = 82/121 (67.77%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVF+FVC+S GGEWTAKQ+ GDLE SA+STY+LQRKLVQTALS DSSGGVQSSFS +SP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVF V+IGGG GGGF  GG AAA    GG A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVFVVVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 119

Query: 121 F 122
           F
Sbjct: 121 F 119

[Close]

BLAST of Tan0005204 vs. TAIR 10
Match: AT5G57290.3 (60S acidic ribosomal protein family )

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-33
Identity = 82/121 (67.77%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVF+FVC+S GGEWTAKQ+ GDLE SA+STY+LQRKLVQTALS DSSGGVQSSFS +SP
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVF V+IGGG GGGF  GG AAA    GG A AA +   +KKEE +EE  + D G  L
Sbjct: 61  TSAVF-VVIGGGGGGGFAAGGGAAAGGGGGGEAAAATKEEEKKKEESEEE--EGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of Tan0005204 vs. TAIR 10
Match: AT4G25890.1 (60S acidic ribosomal protein family )

HSP 1 Score: 134.0 bits (336), Expect = 7.9e-32
Identity = 75/121 (61.98%), Postives = 94/121 (77.69%), Query Frame = 0


Query: 1   MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
           MGVFTFVC++ GG W+AKQ+ G+LE SA+STYELQRKLVQ +LS DSSGGVQSSFS +SP
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKLVQVSLSADSSGGVQSSFSLVSP 60

Query: 61  SSAVFQVIIGGGSGGGFVGGGAAAAAAPAGGAAPAAAEAPAEKKEEVKEESDDDDLGLSL 120
           +SAVFQVI+GGG GGGF  GGAA++    GGA  AAA    ++K++ + E ++ D G  L
Sbjct: 61  TSAVFQVIVGGGGGGGFSAGGAASS---GGGAGEAAAAPKEDEKKKEESEEEEGDFGFDL 118

Query: 121 F 122
           F
Sbjct: 121 F 118

[Close]

BLAST of Tan0005204 vs. TAIR 10
Match: AT5G57290.2 (60S acidic ribosomal protein family )

HSP 1 Score: 127.1 bits (318), Expect = 9.7e-30
Identity = 64/81 (79.01%), Postives = 72/81 (88.89%), Query Frame = 0


Query: 1  MGVFTFVCRSSGGEWTAKQYSGDLEGSAASTYELQRKLVQTALSVDSSGGVQSSFSYISP 60
          MGVF+FVC+S GGEWTAKQ+ GDLE SA+STY+LQRKLVQTALS DSSGGVQSSFS +SP
Sbjct: 1  MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKLVQTALSADSSGGVQSSFSLVSP 60

Query: 61 SSAVFQVIIGGGSGGGFVGGG 82
          +SAVF V+IGGG GGGF  GG
Sbjct: 61 TSAVFVVVIGGGGGGGFAAGG 81

The following BLAST results are available for this feature:

BLAST of Tan0005204 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LVC9	2.4e-33	67.77	60S acidic ribosomal protein P3-2 OS=Arabidopsis thaliana OX=3702 GN=RPP3B PE=2 ...	[more]
P56724	3.8e-31	69.35	60S acidic ribosomal protein P3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06...	[more]
Q9SVZ6	1.1e-30	61.98	60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana OX=3702 GN=RPP3A PE=3 ...	[more]
O24413	4.7e-29	61.79	60S acidic ribosomal protein P3 OS=Zea mays OX=4577 GN=RPP3A PE=1 SV=3	[more]
P52855	3.1e-04	57.35	60S acidic ribosomal protein P1 OS=Zea mays OX=4577 GN=RPP1A PE=1 SV=1	[more]

BLAST of Tan0005204 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889531.1	3.7e-47	88.52	60S acidic ribosomal protein P3-2 [Benincasa hispida]	[more]
XP_004148320.1	3.1e-46	90.16	60S acidic ribosomal protein P3-2 [Cucumis sativus] >KGN61159.1 hypothetical pro...	[more]
XP_008451467.1	5.3e-46	88.52	PREDICTED: 60S acidic ribosomal protein P3-2 [Cucumis melo] >KAA0048624.1 60S ac...	[more]
XP_022153281.1	2.0e-45	90.98	60S acidic ribosomal protein P3-2 [Momordica charantia]	[more]
XP_022929782.1	6.5e-44	85.25	60S acidic ribosomal protein P3-2-like [Cucurbita moschata] >XP_022997309.1 60S ...	[more]

BLAST of Tan0005204 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJB2	1.5e-46	90.16	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G060400 PE=4 SV=1	[more]
A0A5D3BNN6	2.6e-46	88.52	60S acidic ribosomal protein P3-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S3BRK9	2.6e-46	88.52	60S acidic ribosomal protein P3-2 OS=Cucumis melo OX=3656 GN=LOC103492742 PE=4 S...	[more]
A0A6J1DK62	9.7e-46	90.98	60S acidic ribosomal protein P3-2 OS=Momordica charantia OX=3673 GN=LOC111020814...	[more]
A0A6J1KB28	3.1e-44	85.25	60S acidic ribosomal protein P3-2-like OS=Cucurbita maxima OX=3661 GN=LOC1114922...	[more]

BLAST of Tan0005204 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57290.1	1.7e-34	67.77	60S acidic ribosomal protein family	[more]
AT5G57290.3	3.2e-33	67.77	60S acidic ribosomal protein family	[more]
AT4G25890.1	7.9e-32	61.98	60S acidic ribosomal protein family	[more]
AT5G57290.2	9.7e-30	79.01	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 71..121 e-value: 6.0E-12 score: 46.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..122
IPR044252	60S acidic ribosomal protein P3-like	PANTHER	PTHR47207	60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005204.1	Tan0005204.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome