Tan0005182 (gene) Snake gourd v1

Overview


Name	Tan0005182
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	HMG-Y-related protein A
Location	LG11: 17983178 .. 17984203 (+)
RNA-Seq Expression	Tan0005182
Synteny	Tan0005182

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCTTTCCCCTTCCTTCATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCTTCTTCTTTCTCTCTCTAAAAATCCACCATCGCTGCCGTCATGGCCACCGACGACCTACTCAACAACCCACCTCAGCCACCTCCCCCGGCTCCGTCTCTCCCTCACTACCCCGAGGTACTTAATTTCTCCATTTCACTCTCTGTTCTTACATTTCGTCAATTTTCTCTTTGATTTATTTTGGGGAATTTGTTTCGCAGATGATTATGACAGCGATCGACGCTCTCAACGACAAAAACGGAGCTAGCAAATCGGCGATTACGAAGCAAATCGAGTCCACCTACGGCGATCTACCCCCAGCTTTCACTACGCTCCTCACCCACCACTTAGACGTCATGAAGCAAACAGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCGCCGCCGAAGCGCGGCCGTGGCCGCCCTCCCAAGCCCAAAGTCCCTCTCCCGCCGGGCACCGTCGTCTCTCCGCCCCGTCCACGTGGCCGCCCTCCGAAACCCAAGGATCCATTCGCCCCCATTTCGCAGCCCAAGAAGAAACCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCCAAGCCAGCTCCGACGTCGGCTCCGGTCTCCGGTCCGCCCCGAGGCAGAGGGCGGCCGCCGAAGGTAAAGCCGGCCGTCGCTCCGGTTGGGTGCTGAGTGGAGAAAAAAACAGAGGATGAGAGAGAGAGAAAGAGAGAAATAGAGATAGAGAGGGAAAATGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTCCTTCTCTAATTTTAAAAATTTTTAATTTACCTTTTTTTTTTACTTCTGTGTATTACGTGGCGGATGATGTATGGCTGTAATTCTGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTACCGGCTGTTTAGGCTTTTTCTCTTCCC

mRNA sequence

CCCTTTCCCCTTCCTTCATCGTCTTCTTCCCACCAAACCTACAGTGTTTCTCTCTCTTCTTCTTTCTCTCTCTAAAAATCCACCATCGCTGCCGTCATGGCCACCGACGACCTACTCAACAACCCACCTCAGCCACCTCCCCCGGCTCCGTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGACGCTCTCAACGACAAAAACGGAGCTAGCAAATCGGCGATTACGAAGCAAATCGAGTCCACCTACGGCGATCTACCCCCAGCTTTCACTACGCTCCTCACCCACCACTTAGACGTCATGAAGCAAACAGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCGCCGCCGAAGCGCGGCCGTGGCCGCCCTCCCAAGCCCAAAGTCCCTCTCCCGCCGGGCACCGTCGTCTCTCCGCCCCGTCCACGTGGCCGCCCTCCGAAACCCAAGGATCCATTCGCCCCCATTTCGCAGCCCAAGAAGAAACCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCCAAGCCAGCTCCGACGTCGGCTCCGGTCTCCGGTCCGCCCCGAGGCAGAGGGCGGCCGCCGAAGGTAAAGCCGGCCGTCGCTCCGGTTGGGTGCTGAGTGGAGAAAAAAACAGAGGATGAGAGAGAGAGAAAGAGAGAAATAGAGATAGAGAGGGAAAATGATGAAATTGTTTAGGTTGTGTTTAGCTGCTGAGAGCTCTCCGGGAATTGCTCTGTTTTTAATTTTTTTTTTCCTTCTCTAATTTTAAAAATTTTTAATTTACCTTTTTTTTTTACTTCTGTGTATTACGTGGCGGATGATGTATGGCTGTAATTCTGGGTGGGGGTTAGGAGACTGTAATTGCATGTAAGTTATTTTACCGGCTGTTTAGGCTTTTTCTCTTCCC

Coding sequence (CDS)

ATGGCCACCGACGACCTACTCAACAACCCACCTCAGCCACCTCCCCCGGCTCCGTCTCTCCCTCACTACCCCGAGATGATTATGACAGCGATCGACGCTCTCAACGACAAAAACGGAGCTAGCAAATCGGCGATTACGAAGCAAATCGAGTCCACCTACGGCGATCTACCCCCAGCTTTCACTACGCTCCTCACCCACCACTTAGACGTCATGAAGCAAACAGGGCAACTCCTCTTCATCAAAAACAACTACATGAAGCCCGATCCCAACGCGCCGCCGAAGCGCGGCCGTGGCCGCCCTCCCAAGCCCAAAGTCCCTCTCCCGCCGGGCACCGTCGTCTCTCCGCCCCGTCCACGTGGCCGCCCTCCGAAACCCAAGGATCCATTCGCCCCCATTTCGCAGCCCAAGAAGAAACCCTCCTCGGGAAGTGGAAGGCCACGTGGCCGCCCCCCGAAGTACCCCAAGCCAGCTCCGACGTCGGCTCCGGTCTCCGGTCCGCCCCGAGGCAGAGGGCGGCCGCCGAAGGTAAAGCCGGCCGTCGCTCCGGTTGGGTGCTGA

Protein sequence

MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRPPKVKPAVAPVGC

Homology

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BLAST of Tan0005182 vs. ExPASy Swiss-Prot
Match: Q00423 (HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-47
Identity = 113/184 (61.41%), Postives = 135/184 (73.37%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MAT+++  N PQ      SLP YPEMI+  ++ALN+ NG++KSAI+K IE+TYG+LP A 
Sbjct: 1   MATEEV--NKPQ------SLPPYPEMIVKTLEALNEPNGSNKSAISKYIETTYGELPDA- 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
            T+L  HL+ MK +G+L F +NNYMK DPNAPPKRGRGRPPKPK PLPPGTVVSPPRPRG
Sbjct: 61  -TVLGSHLNKMKDSGELSFKQNNYMKADPNAPPKRGRGRPPKPKTPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVS-GPPRGRGRPPKVKPA 180
           RP  PKDP AP   PK K + GSGRPRGRP K P+    +AP +    R RGRPPKVKP 
Sbjct: 121 RP--PKDPNAPPKSPKAKATPGSGRPRGRPKKVPRSPAVAAPTAVSSGRPRGRPPKVKPQ 172

Query: 181 VAPV 184
           +  V
Sbjct: 181 LTEV 172

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BLAST of Tan0005182 vs. ExPASy Swiss-Prot
Match: Q43386 (HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-44
Identity = 113/190 (59.47%), Postives = 134/190 (70.53%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AI++LNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFIKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ +KNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKPSSGSGRPRGRPPKYPK--------PAPTSAPVSGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A  +G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

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BLAST of Tan0005182 vs. ExPASy Swiss-Prot
Match: Q10370 (HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-38
Identity = 96/152 (63.16%), Postives = 113/152 (74.34%), Query Frame = 0


Query: 33  ALNDKNGASKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAP 92
           ALN+ +G++KSAI+K IE+TYG+LP    T+L  HL+ MK++G+L F +NNYMK DPNAP
Sbjct: 1   ALNEADGSNKSAISKYIETTYGELPD--ETVLGSHLNKMKESGELAFKQNNYMKADPNAP 60

Query: 93  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRPPKPKDPFAPISQPKKKPSSGSGRPRGRPPK 152
           PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP  PKDP AP   PK K +  +GRPRGRP K
Sbjct: 61  PKRGRGRPPKPKVPLPPGTVVSPPRPRGRP--PKDPNAPPKSPKAKATPATGRPRGRPKK 120

Query: 153 YPK-PAPTSAPVSGPPRGRGRPPKVKPAVAPV 184
             + PA  S       R RGRPPKVKP +  V
Sbjct: 121 VARSPAVPSPTAVSTGRPRGRPPKVKPQLTEV 148

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BLAST of Tan0005182 vs. ExPASy Swiss-Prot
Match: Q9FYS5 (HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.8e-33
Identity = 100/197 (50.76%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATD+     P PP        YPEMI+ AI+ L+DK+G++KSAI+K IE  YG LPPA 
Sbjct: 1   MATDEATKPSPIPP--------YPEMILAAIEGLDDKSGSNKSAISKYIEGKYGSLPPAH 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPD-PNAPPKRGRGRPPK---PKVPLP-PGTVVSP 120
            +LLT HL  MK++G+L+F+KNNY +   P+APPKRGRGRPPK   P  P P P +  S 
Sbjct: 61  ASLLTAHLARMKESGELVFLKNNYFRAGAPDAPPKRGRGRPPKARDPNAPAPAPKSPSST 120

Query: 121 PRPRGRPPKPKDPFAPISQPKKKPSSGSGRPRGRPPK--------YPKPAPTSAPV---S 180
            R RGRPPK K   +P+    K+ ++G  +PRGRPPK         P P+P  AP    S
Sbjct: 121 GRGRGRPPKAK---SPLEAAVKQATAGMPKPRGRPPKKAKTDGAASPSPSPAPAPAGDGS 180

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BLAST of Tan0005182 vs. ExPASy Swiss-Prot
Match: Q9M5W4 (Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 56/176 (31.82%), Postives = 86/176 (48.86%), Query Frame = 0


Query: 19  SLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTGQLL 78
           S P + EMI  AI  L ++ G+S+ AI K +E  +  LP  F  LL  HL  +  +G+L+
Sbjct: 50  SHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLKKLVASGKLV 109

Query: 79  FIKNNYMKPDPNAPPKRGRGRP---PKPKVPLPPGTVVSPPRPRGR---PPKPKDPFAPI 138
            +KN++  P   A P     +    PKPKV   P T     +P+ +     K K     +
Sbjct: 110 KVKNSFKLPSARAAPAPALAKKPTIPKPKVAAKPKTAKIGAKPKAKAKVAAKTKATTKTV 169

Query: 139 SQ--PKKKP-SSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRP-PKVKPAVAPVG 185
           ++  P  KP +  +G+P+    K  K A T+A V+ P + +  P  KVK   +P G
Sbjct: 170 AKKIPAAKPKAKTAGKPKTVAAKPAKVAKTAA-VASPGKKKAVPVKKVKTVKSPAG 224

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BLAST of Tan0005182 vs. NCBI nr
Match: XP_038906720.1 (HMG-Y-related protein A-like [Benincasa hispida])

HSP 1 Score: 349.0 bits (894), Expect = 2.5e-92
Identity = 175/185 (94.59%), Postives = 181/185 (97.84%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATDD LNNPPQPPPPAPSLPHYPEMIMTAI++LNDKNG SKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMTAIESLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           +TLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  STLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRPPKVKPAV 180
           RPPKPKDPFAPISQPKKK + GSGRPRGRPPKYPKPAPTSAPV+GPPRGRGRPPKVKPAV
Sbjct: 121 RPPKPKDPFAPISQPKKKTTPGSGRPRGRPPKYPKPAPTSAPVAGPPRGRGRPPKVKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

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BLAST of Tan0005182 vs. NCBI nr
Match: XP_004150116.1 (HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_008586 [Cucumis sativus])

HSP 1 Score: 347.8 bits (891), Expect = 5.7e-92
Identity = 178/186 (95.70%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATDD LNNPPQPPPPAPSLPHYPEMIM AID+LNDKNG SKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSA-PVSGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTSA PV+GPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

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BLAST of Tan0005182 vs. NCBI nr
Match: XP_008466945.1 (PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related protein A [Cucumis melo var. makuwa] >TYK30498.1 HMG-Y-related protein A [Cucumis melo var. makuwa])

HSP 1 Score: 347.4 bits (890), Expect = 7.4e-92
Identity = 177/186 (95.16%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATDD LNNPPQPPPPAPSLPHYPEMIM AID+LNDKNG SKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSA-PVSGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTSA PV+GPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

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BLAST of Tan0005182 vs. NCBI nr
Match: XP_022953026.1 (HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related protein B-like [Cucurbita maxima] >KAG6601871.1 HMG-Y-related protein A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032572.1 HMG-Y-related protein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 344.0 bits (881), Expect = 8.2e-91
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MAT D LNNPPQPPPPAPSLPHYPEMIM+AIDALNDKNG SKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTS PV+ PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Tan0005182 vs. NCBI nr
Match: XP_023545599.1 (HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 341.3 bits (874), Expect = 5.3e-90
Identity = 171/185 (92.43%), Postives = 177/185 (95.68%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MAT D  NNPPQPPPPAPSLPHYPEMIM+AIDALNDKNG SKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQHNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTS PV+ PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

[Close]

BLAST of Tan0005182 vs. ExPASy TrEMBL
Match: A0A0A0KPG4 (H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.7e-92
Identity = 178/186 (95.70%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATDD LNNPPQPPPPAPSLPHYPEMIM AID+LNDKNG SKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSA-PVSGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTSA PV+GPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Tan0005182 vs. ExPASy TrEMBL
Match: A0A5D3E3W3 (HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00410 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.6e-92
Identity = 177/186 (95.16%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATDD LNNPPQPPPPAPSLPHYPEMIM AID+LNDKNG SKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSA-PVSGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTSA PV+GPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Tan0005182 vs. ExPASy TrEMBL
Match: A0A1S3CSD8 (HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.6e-92
Identity = 177/186 (95.16%), Postives = 181/186 (97.31%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MATDD LNNPPQPPPPAPSLPHYPEMIM AID+LNDKNG SKSAITKQIESTYGDLPPAF
Sbjct: 1   MATDDQLNNPPQPPPPAPSLPHYPEMIMAAIDSLNDKNGVSKSAITKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSA-PVSGPPRGRGRPPKVKPA 180
           RPPKPKDPFAPISQPKKK +SGSGRPRGRPPKYPKPAPTSA PV+GPPRGRGRPPKVKPA
Sbjct: 121 RPPKPKDPFAPISQPKKKTTSGSGRPRGRPPKYPKPAPTSAPPVAGPPRGRGRPPKVKPA 180

Query: 181 VAPVGC 186
           VAPVGC
Sbjct: 181 VAPVGC 186

[Close]

BLAST of Tan0005182 vs. ExPASy TrEMBL
Match: A0A6J1JSA2 (HMG-Y-related protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111487099 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.0e-91
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MAT D LNNPPQPPPPAPSLPHYPEMIM+AIDALNDKNG SKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTS PV+ PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

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BLAST of Tan0005182 vs. ExPASy TrEMBL
Match: A0A6J1GLV6 (HMG-Y-related protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111455542 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.0e-91
Identity = 172/185 (92.97%), Postives = 178/185 (96.22%), Query Frame = 0


Query: 1   MATDDLLNNPPQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAF 60
           MAT D LNNPPQPPPPAPSLPHYPEMIM+AIDALNDKNG SKS +TKQIESTYGDLPPAF
Sbjct: 1   MATADQLNNPPQPPPPAPSLPHYPEMIMSAIDALNDKNGVSKSVLTKQIESTYGDLPPAF 60

Query: 61  TTLLTHHLDVMKQTGQLLFIKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120
           TTLLTHHLDVMKQTGQLLF+KNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG
Sbjct: 61  TTLLTHHLDVMKQTGQLLFVKNNYMKPDPNAPPKRGRGRPPKPKVPLPPGTVVSPPRPRG 120

Query: 121 RPPKPKDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSAPVSGPPRGRGRPPKVKPAV 180
           RPPK +DPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTS PV+ PPRGRGRPPK+KPAV
Sbjct: 121 RPPKSRDPFAPISQPKKKPSSGSGRPRGRPPKYPKPAPTSVPVASPPRGRGRPPKIKPAV 180

Query: 181 APVGC 186
           APVGC
Sbjct: 181 APVGC 185

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BLAST of Tan0005182 vs. TAIR 10
Match: AT1G14900.1 (high mobility group A )

HSP 1 Score: 179.5 bits (454), Expect = 2.5e-45
Identity = 113/190 (59.47%), Postives = 134/190 (70.53%), Query Frame = 0


Query: 16  PAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAFTTLLTHHLDVMKQTG 75
           P+ SLP YP+MIM AI++LNDKNG +K+ I K IEST   LPP+  TLL++HL+ MK+TG
Sbjct: 19  PSFSLPPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTG 78

Query: 76  QLLFIKNNYMKPDPNAPPKRGRGRPPKPK---------VPLPPGTVVS--PPRPRGRPPK 135
           QL+ +KNNYMKPDP+APPKRGRGRPPK K           +   TVVS  PPR RGRPPK
Sbjct: 79  QLIMVKNNYMKPDPDAPPKRGRGRPPKQKTQAESDAAAAAVVAATVVSTDPPRSRGRPPK 138

Query: 136 PKDPFAPISQPKKKPSSGSGRPRGRPPKYPK--------PAPTSAPVSGPPRGRGRPPKV 186
           PKDP  P   P++K  +GSGRPRGRPPK P+        P P +A  +G  RGRGRPPKV
Sbjct: 139 PKDPSEP---PQEKVITGSGRPRGRPPKRPRTDSETVAAPEP-AAQATGERRGRGRPPKV 198

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BLAST of Tan0005182 vs. TAIR 10
Match: AT1G48620.1 (high mobility group A5 )

HSP 1 Score: 62.4 bits (150), Expect = 4.4e-10
Identity = 69/199 (34.67%), Postives = 91/199 (45.73%), Query Frame = 0


Query: 11  PQPPPPAPSLPHYPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAFTTLLTHHLDV 70
           P PP P+ S P Y +MI TAI ALN+ +G+SK AI++ IE  Y  +P A   LLTHHL  
Sbjct: 66  PVPPHPSISHPPYSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKT 125

Query: 71  MKQTGQLLFIKNNYMKPDPNAPPKRGRGRP---------------PKPKVPLPPGTVVSP 130
           +K +G L+ +K +Y       PP      P               P P   L   T  + 
Sbjct: 126 LKTSGILVMVKKSYKLASTPPPPPPTSVAPSLEPPRSDFIVNENQPLPDPVLASSTPQTI 185

Query: 131 PRPRGRPPKPKDPFA---PISQPK------KKPSSGSGRPRGRPPKYP-KPAPTSAPVSG 185
            R RGRPPK K       P++  K      + P S     + +PP+ P +P        G
Sbjct: 186 KRGRGRPPKAKPDVVQPQPLTNGKLTWEQSELPVSRPEEIQIQPPQLPLQPQQPVKRPPG 245

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BLAST of Tan0005182 vs. TAIR 10
Match: AT3G18035.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 61.6 bits (148), Expect = 7.6e-10
Identity = 71/203 (34.98%), Postives = 96/203 (47.29%), Query Frame = 0


Query: 11  PQPP----PPAPSLPH--YPEMIMTAIDALNDKNGASKSAITKQIESTYGDLPPAFTTLL 70
           PQP      P  S+PH  Y EMI  AI ALN+ +G+SK AI++ IE  Y  L  A   LL
Sbjct: 50  PQPQMFQLSPHVSMPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALL 109

Query: 71  THHLDVMKQTGQLLFIKNNYMKPDPNAPP--------KRGRGRP-PKPKV-------PLP 130
           THHL  +K +G L  +K +Y     + PP           +G   P+ ++       P+ 
Sbjct: 110 THHLKTLKTSGVLSMVKKSYKIAGSSTPPASVAVAAAAAAQGLDVPRSEILHSSNNDPMA 169

Query: 131 PGTVVSP-PRPRGRPPKPKDPFAPISQPKKKPSS---GSGRPRGRPPKYPKPAPTSAPVS 184
            G+   P  R RGRPPKPK    P    +  P++    +G+P     +   P P   PV+
Sbjct: 170 SGSASQPLKRGRGRPPKPKPESQPQPLQQLPPTNQVQANGQPIWEQQQVQSPVPVPTPVT 229

The following BLAST results are available for this feature:

BLAST of Tan0005182 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q00423	7.6e-47	61.41	HMG-Y-related protein A OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q43386	3.5e-44	59.47	HMG-Y-related protein A OS=Arabidopsis thaliana OX=3702 GN=HMGA PE=1 SV=1	[more]
Q10370	1.7e-38	63.16	HMG-Y-related protein B (Fragment) OS=Glycine max OX=3847 PE=2 SV=1	[more]
Q9FYS5	4.8e-33	50.76	HMG-Y-related protein A OS=Zea mays OX=4577 GN=HMGIY2 PE=1 SV=1	[more]
Q9M5W4	7.9e-04	31.82	Histone H1 OS=Euphorbia esula OX=3993 PE=2 SV=1	[more]

BLAST of Tan0005182 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906720.1	2.5e-92	94.59	HMG-Y-related protein A-like [Benincasa hispida]	[more]
XP_004150116.1	5.7e-92	95.70	HMG-Y-related protein A [Cucumis sativus] >KGN51483.1 hypothetical protein Csa_0...	[more]
XP_008466945.1	7.4e-92	95.16	PREDICTED: HMG-Y-related protein A [Cucumis melo] >KAA0046335.1 HMG-Y-related pr...	[more]
XP_022953026.1	8.2e-91	92.97	HMG-Y-related protein B-like [Cucurbita moschata] >XP_022990103.1 HMG-Y-related ...	[more]
XP_023545599.1	5.3e-90	92.43	HMG-Y-related protein B-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0005182 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPG4	2.7e-92	95.70	H15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G568810 PE=4 SV...	[more]
A0A5D3E3W3	3.6e-92	95.16	HMG-Y-related protein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CSD8	3.6e-92	95.16	HMG-Y-related protein A OS=Cucumis melo OX=3656 GN=LOC103504324 PE=4 SV=1	[more]
A0A6J1JSA2	4.0e-91	92.97	HMG-Y-related protein B-like OS=Cucurbita maxima OX=3661 GN=LOC111487099 PE=4 SV...	[more]
A0A6J1GLV6	4.0e-91	92.97	HMG-Y-related protein B-like OS=Cucurbita moschata OX=3662 GN=LOC111455542 PE=4 ...	[more]

BLAST of Tan0005182 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G14900.1	2.5e-45	59.47	high mobility group A	[more]
AT1G48620.1	4.4e-10	34.67	high mobility group A5	[more]
AT3G18035.1	7.6e-10	34.98	winged-helix DNA-binding transcription factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000116	High mobility group protein HMGA	PRINTS	PR00930	HIGHMOBLTYIY	coord: 92..104 score: 65.93 coord: 118..129 score: 50.0 coord: 107..118 score: 41.67 coord: 133..152 score: 43.57
IPR017956	AT hook, DNA-binding motif	PRINTS	PR00929	ATHOOK	coord: 114..125 score: 65.97 coord: 142..152 score: 69.32 coord: 94..104 score: 77.27
IPR017956	AT hook, DNA-binding motif	SMART	SM00384	AT_hook_2	coord: 116..128 e-value: 23.0 score: 7.6 coord: 144..156 e-value: 2.2 score: 13.3 coord: 167..179 e-value: 1.1 score: 15.1 coord: 94..106 e-value: 11.0 score: 9.3
IPR005818	Linker histone H1/H5, domain H15	SMART	SM00526	h15plus2	coord: 17..83 e-value: 4.9E-20 score: 82.6
IPR005818	Linker histone H1/H5, domain H15	PFAM	PF00538	Linker_histone	coord: 21..81 e-value: 9.5E-10 score: 38.7
IPR005818	Linker histone H1/H5, domain H15	PROSITE	PS51504	H15	coord: 19..88 score: 21.634014
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 16..97 e-value: 3.3E-13 score: 51.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	PANTHER	PTHR11467	HISTONE H1	coord: 8..183
IPR031059	High mobility group protein HMGA, plant	PANTHER	PTHR11467:SF103	HMG-Y-RELATED PROTEIN A	coord: 8..183
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 15..95

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005182.1	Tan0005182.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030261	chromosome condensation
biological_process	GO:0045910	negative regulation of DNA recombination
biological_process	GO:0006334	nucleosome assembly
biological_process	GO:0016584	nucleosome positioning
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000786	nucleosome
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0031492	nucleosomal DNA binding
molecular_function	GO:0003677	DNA binding