Tan0005174 (gene) Snake gourd v1

Overview


Name	Tan0005174
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Basic leucine zipper/W2 domain protein
Location	LG09: 52506518 .. 52506727 (+)
RNA-Seq Expression	Tan0005174
Synteny	Tan0005174

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATGAACTCTGATCAACAACAGTCGATGCACCAGCAGCAACAAACGTCTTCCACTGATTCATTTTCCGTTGGCGAAGGAGACACATCACAGGATTAG

mRNA sequence

ATGGCGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATGAACTCTGATCAACAACAGTCGATGCACCAGCAGCAACAAACGTCTTCCACTGATTCATTTTCCGTTGGCGAAGGAGACACATCACAGGATTAG

Coding sequence (CDS)

ATGGCGAGAGAGAAGAGCCCTGGCTTAAAGATCCTCTGGGTTTGGACTCTTGGCACCGCCGCCATTCTCGTTACAAGCGTAGCTCGGATGAGAATGAGGGATATGGAGAGTATTATGAACTCTGATCAACAACAGTCGATGCACCAGCAGCAACAAACGTCTTCCACTGATTCATTTTCCGTTGGCGAAGGAGACACATCACAGGATTAG

Protein sequence

MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSDQQQSMHQQQQTSSTDSFSVGEGDTSQD

Homology

[Close]

BLAST of Tan0005174 vs. NCBI nr
Match: KAG7022194.1 (hypothetical protein SDJN02_15924, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 1.0e-22
Identity = 64/70 (91.43%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSD-QQQSMHQQQQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESI+ SD QQQSMHQQ+QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 SVGEGDTSQD 70
           VGEGDTS+D
Sbjct: 61 FVGEGDTSED 70

[Close]

BLAST of Tan0005174 vs. NCBI nr
Match: XP_022933307.1 (uncharacterized protein LOC111440489 [Cucurbita moschata])

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSD-QQQSMHQQQQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESI+ SD QQQSMHQQ+QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 SVGEGDTSQD 70
           VGEG+TS++
Sbjct: 61 FVGEGETSEN 70

[Close]

BLAST of Tan0005174 vs. NCBI nr
Match: KAG6588274.1 (hypothetical protein SDJN03_16839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 107.1 bits (266), Expect = 6.3e-20
Identity = 59/64 (92.19%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSD-QQQSMHQQQQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESI+ SD QQQSMHQQ+QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 SVGE 64
           VGE
Sbjct: 61 FVGE 64

[Close]

BLAST of Tan0005174 vs. NCBI nr
Match: XP_022987500.1 (uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetical protein SDJN02_14793, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 103.6 bits (257), Expect = 7.0e-19
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSDQQQSMHQQQQTSSTDSFS 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME+++NSDQQ S+H  QQTSSTDSFS
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLH-HQQTSSTDSFS 60

Query: 61 VGEGDTSQ 69
          V EGD SQ
Sbjct: 61 VDEGDVSQ 67

[Close]

BLAST of Tan0005174 vs. NCBI nr
Match: XP_023516467.1 (uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 7.0e-19
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSDQQQSMHQQQQTSSTDSFS 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME+++NSDQQ S+H  QQTSSTDSFS
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLH-HQQTSSTDSFS 60

Query: 61 VGEGDTSQ 69
          V EGD SQ
Sbjct: 61 VDEGDASQ 67

[Close]

BLAST of Tan0005174 vs. ExPASy TrEMBL
Match: A0A6J1EZE2 (uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC111440489 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 5.6e-22
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSD-QQQSMHQQQQTSSTDSF 60
          MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESI+ SD QQQSMHQQ+QTSSTDSF
Sbjct: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIIKSDQQQQSMHQQRQTSSTDSF 60

Query: 61 SVGEGDTSQD 70
           VGEG+TS++
Sbjct: 61 FVGEGETSEN 70

[Close]

BLAST of Tan0005174 vs. ExPASy TrEMBL
Match: A0A6J1JH17 (uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 3.4e-19
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSDQQQSMHQQQQTSSTDSFS 60
          MAR+KSPG+KILWVWTLGTAAILVTSVAR RMRDME+++NSDQQ S+H  QQTSSTDSFS
Sbjct: 1  MARQKSPGVKILWVWTLGTAAILVTSVARRRMRDMENMINSDQQPSLH-HQQTSSTDSFS 60

Query: 61 VGEGDTSQ 69
          V EGD SQ
Sbjct: 61 VDEGDVSQ 67

[Close]

BLAST of Tan0005174 vs. ExPASy TrEMBL
Match: A0A6J1D892 (uncharacterized protein LOC111018274 OS=Momordica charantia OX=3673 GN=LOC111018274 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-16
Identity = 57/72 (79.17%), Postives = 60/72 (83.33%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSDQQQSMHQQQQTSSTDSFS 60
          MAREK+PGLKILWVWTLGTAAILVTSVARMRMRDME+I+NSDQQQS  Q QQT  TDS  
Sbjct: 19 MAREKNPGLKILWVWTLGTAAILVTSVARMRMRDMETIINSDQQQS--QPQQTFPTDSLP 78

Query: 61 VGEG----DTSQ 69
           GEG    DTSQ
Sbjct: 79 NGEGVIRDDTSQ 88

[Close]

BLAST of Tan0005174 vs. ExPASy TrEMBL
Match: A0A0A0LY21 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.7e-16
Identity = 53/70 (75.71%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIM--NSDQQQSMHQQQQTSSTDS 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  NSDQQQS+H  QQTSSTDS
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTVNFNSDQQQSLH-HQQTSSTDS 60

Query: 61 FSVGEGDTSQ 69
          FS+ + D SQ
Sbjct: 61 FSLDDADKSQ 69

[Close]

BLAST of Tan0005174 vs. ExPASy TrEMBL
Match: A0A5D3E426 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84664G00800 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 5.6e-14
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIM--NSDQQQSMHQQQQTSST-- 60
          M REKSPGLKILWVWTLGTAAIL TSV RMR+RDME+ +  NSDQQ S+H  QQTSST  
Sbjct: 1  MVREKSPGLKILWVWTLGTAAILATSVVRMRLRDMENTINFNSDQQPSLH-HQQTSSTDS 60

Query: 61 ----DSFSVGEGDTSQD 70
              DSFSV + D SQ+
Sbjct: 61 FPIPDSFSVDDADKSQE 76

[Close]

BLAST of Tan0005174 vs. TAIR 10
Match: AT1G06010.1 (unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 75.5 bits (184), Expect = 1.9e-14
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 0


Query: 1  MAREKSPGLKILWVWTLGTAAILVTSVARMRMRDMESIMNSDQQQSMHQQQQTSSTDS 59
          M REKSPGLKILWVWT+GTAAILVTSV R RM+DM+++MN +Q+Q+  + Q  S+ DS
Sbjct: 1  MGREKSPGLKILWVWTIGTAAILVTSVVRTRMQDMQTMMNQNQEQAPKENQNGSAGDS 58

The following BLAST results are available for this feature:

BLAST of Tan0005174 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005174 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7022194.1	1.0e-22	91.43	hypothetical protein SDJN02_15924, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022933307.1	1.1e-21	88.57	uncharacterized protein LOC111440489 [Cucurbita moschata]	[more]
KAG6588274.1	6.3e-20	92.19	hypothetical protein SDJN03_16839, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022987500.1	7.0e-19	82.35	uncharacterized protein LOC111485045 [Cucurbita maxima] >KAG7023767.1 hypothetic...	[more]
XP_023516467.1	7.0e-19	82.35	uncharacterized protein LOC111780326 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Tan0005174 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EZE2	5.6e-22	88.57	uncharacterized protein LOC111440489 OS=Cucurbita moschata OX=3662 GN=LOC1114404...	[more]
A0A6J1JH17	3.4e-19	82.35	uncharacterized protein LOC111485045 OS=Cucurbita maxima OX=3661 GN=LOC111485045...	[more]
A0A6J1D892	1.2e-16	79.17	uncharacterized protein LOC111018274 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A0A0LY21	2.7e-16	75.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G656450 PE=4 SV=1	[more]
A0A5D3E426	5.6e-14	68.83	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Tan0005174 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G06010.1	1.9e-14	65.52	unknown protein; Has 25 Blast hits to 25 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005174.1	Tan0005174.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane