Tan0005165 (gene) Snake gourd v1

Overview


Name	Tan0005165
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerases II, IV and V subunit 11-like
Location	LG06: 4536122 .. 4540483 (+)
RNA-Seq Expression	Tan0005165
Synteny	Tan0005165

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCTGAGGGCACCAAGAAGTATATTCTCGAAACCCTAACTTTTCTTTATCATCTCTTTCATTTTACAACCGAGTTTTCTTTCTTTCTATGTCCACTGTCACTGTCTCTGTTGTGATTTTTCTATACGGACGTCCATTTTGTTGAACATCGTAGGGTTTCATACGAGAGAGACATGAAGATCATGAACGCGACGACCTTTATATTGGAAAGAGAGGATCATACCGTTGGAAACATCTTCCGCATGTAGCATTTTCTATTGATTGGAGAGTTTTCTGGCGATTTTGATTAGTTTCTTGGTTATTGTTTGCTGATTTGTGTATATATATTCTTTTGTTTTTTGGTGTAAATAATCAGACAACTTCACAGATATGATAATGTGTTGTTTGTTGGCTACCAGCTTACTCGCCCTCTTAAGTACATAATACTTGTCCGGGTTAGTACTTTGGTTATTTTTCCGTTGTTTATTTGTTGTTGTATTGCATGAATGGTTAATTCTATAGGACAATGTTGCTGCTTGGTAATTGCATATGGATGATAATGACTTATTGAATTTTATAATGTAAATAACGTTAATTTTTCTAGGTTAAATATTAAACTATTTGTAAATATAGAGTTGTTTTTTTGTCTTATTGGAATGCGTTTCTCGGAATGCGTCAGTCCAACAAACGCATTCTATTTATTCCCATTAAAATACGTCACATCCTTAAAGAATAAAAAATATATATATTATCTAAATCTTAACTAACCATATTTTTTTTTTCTAAAATTTGTTCAATCTTGGTTCAATCATTGATAAGTCATCTAAATCAATAAAAAATATTTTGACAATATTACATTAATGAAAAATATTTTTAATATCGTCAAAATATTTATATTTTTTATTTGTTATTTGTTAAATTAATGAGAAATATTTTGACAATATTACATTATACGTTAGATTTAGTAGGTTTAAACTTATCACTTTTCATGCAAAAATTTGAAAAGTTTATATTGATATATTAATTCAATTTATATTTGAGAGTGAAATATTTAATCATTTTTCTAAGCAATTAATCCTTTAAATGTGGTAATTTTTCACTACAGTACAAACATTTTATATAACACACATTTTATTTAACAGAAAAAACTTACTTTTTCTAATAGAAAAGAAAAACTAAGTTCTTGATTTGATGATACTCTCCACAAAGTAATTATAAAAAAATATAAAACTAAAATTAATAATGGTAAAAGATATTCTACCTTTTTTAGGAGGGATGAACAATTTAGGTGGATTTTTTTGTAGAGAGGTGAAAGAGATGTTGAGGTATTCTACCTTTTTTAGGAGGGAGATTCCAATAAATCCAAATTTTTGTGGGTTGCATCTTCCCAAGTGACGACGCAACCTCTTAAGTACATAATACTTTCCGGGTTACAAGCTTCTTCATCCTCGGAATACTTGTCCGGGTTAGTACTTTGATTTTTTTTCCGTTGTTTATTTGTTGTTGTATTGCATGAATGATTAATTGAATAGGATGTGGGCATCTCTGTAAGGCATTGTTGTTGTGTAATTGCATAGGGAGGATAATGACTTATTGAATTTTATAATGTAAATAAGTTAATTTTTCTCGGCTAAATATTAAACTAGGGTTATTTATTAAAATATTTATAGAAAAATGGTAGGTTTCAAAACTATTTGTAAATATAGAATTATTTTTTTTTTGTCTTATTGGAATGTCAAACGCATTCTCGTTCTGCTCTCTCTACATAAGTGCCACTAAGAATGCGTATGTCCAACAAACGCATTCTATTTATTCCCATTAAAATACGCCACATCCTTAAAAAAAATATATATTATCTAAACCTTAATTAACCATATATTTTTTATATATATATTTTTCTAAAATTTGTTCAATCTTGGTTTAATCATTGATAAGTCATCTAAATCAATGGAAAATATTTTGACAATATTACATTAATGAACAATATTTTTAATATCGTCAAAATATTTATATTTTTTTATTTGTTATTTTGTTAAATTAATGAGAAATATTTTGACAATACTACATTATACGTTAGATTTAGTAGGTTTAAACTTACCACTTTTCATGCAAAGATTTGAAAGGTTTATATTGATATATTAATTCAATTTATATTTGAGAGTGAAATATTTAATCATTTTTCTAAGCAATTAATCATTTAAATGTGGTAATTTTTCACTACAGTACAATTTAACAGAAAAAACTTACTTTTTCTAATAGGAAAGAAAATCCGAACCTCTTGATTTCGTTTAGATGATACTCTCCACAAATTATTTCCCCTTAAAATAATAAGAACAATATATCAGTAATTATAAAAAAAATATAAAACTAAAATTAATAACGGTAAAAGATATTCTACCTTTTTTTAGGAGGGATGAACGATTTAGGTAATTTGTTGCAGAGTGATGAAAGAGAGGCTCTACCTTTTTTAGGAGGGAGAATGAATGGCTGCCAAATGTAAATTCCTCAAGGAATACGATGAGTCAAATTGATGCATTCTAATAAAACCAAATTTTTGTGGGTTGCGTCTTCCCAAGTGACGCATCCTAATCTACGCGTCTTCCGAAGTGACGCATTCCAATAACTCCAAAAAAACTACCCATTTTTTATAAATTGTTTTCAAAACTACTTCTTTTTTGCAATAAGTTTAGAAAATAACACCAATTTTATATTTTGCCCCATTTTTCTCTGTTATTTGAGCTAGTTTTGAGATTGCTAAGTTATGGGGGATATCATCATCCGGTGAGGTGTTTGGGGCGCTGGATGGGTTATAATAACAGGGGGTTTATGTGGGTTATTATAGTCTGTCAAATCATGTAATATTATTTAAAATGCAGAGTAGTATAGTGCATGGGCTTATAATAATCTGTATTTGGGGTGCATAGCATTCCACATGTTATAATAACACATGCTATTATAACTTGTGCCCCAAACAAGCTCTAACTTCTTATGATGAAAACTTTAAGATATTACGTCTCATTTGATAACATTTGGATTTTGAAAATTAAGCCTATGAGTTTCTTGTTTTGTTATCTACTTTTTACTTATGTTTTAAAAAATCAAACCAAAATTTTAAAACTAAAAAAAAAAACTTTTAAAAACCTATTTTTGTTTTTTGAATTTGGCTAAGAATTCAAATGTTTTAGGACATATTTGGGGTACACGTTGTTATTATAACCTATGAAATACTCTGCACCCCAAACACAGACTATTATAACCCAGATTATTATTATAACACACTCAACGTCCCAAACAACCCCTTAAAGATGAAACAAAACCTATTGTAGATAAATGATGAAACAAGATTTTCAAAAACTAAATGGTTATCAAACGAAATTTATCTATTGTAGATAAATGGTTTTCAAAAACTATTGTAAATAAATGTTTATACAATTTTCTTATTCTATATGGATCATGGGTGATTGCGCCCCTCTTATCTTCTTCACTCCACCCTGCGACTGGAATTCAGATAATCAATTTGCCTTAGAGGAAGTGCAATGTAGTGGAATCCTTTTCCAAGTAGGGTAACATTTTTCGTTTTTTCCCCAGAATGATCATGAACATCACCTGGGAGAAAACCACGATTAGAAATCCTTGAGGATAACAAAGACTTTACAGTTACTGATTGGTTTTGAATATTGTAATTCTATGTAACTTTATTATGGTCTGTTCTTGATTAAATTACAATTGATCATTAAGTTCTGGTTTGTGTTCTTTTATCATTATTTTTCAATTCTTTCAATGTTATTGTTCTGCAGATACACACGACTAGCCAGTCTTCACCGATGCAGGCGTATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATACGAACTCGAGGTAATGCTTTTACTCCCCTTTGGTTCTTTTTTTATGCAGTTTGGGTGAGTATGATTTTGTTCTTATTCATCATTATGATGGAATCTAGTCCTCTGCTTATCTTGCTCAAAGGTGTCTTATTTTCTTTAGATTTTGTTCTTATATTTGTAAATGATTGATTTTGTTCTTATATTAAATGTCATATAGATCTTATATTGCTTATTTTTAAACTCTATAACACATGGAATGCATGTAGTTTACAATACAAGTTCATTTTAAATTATTTGAAGTTTTTGTTAAATGGAGCACAATAATTTAATAGTTAAGGGAAGAAAACTCTCAATCAAAGCTCAAGGGATAAAAAGTTATAAGCCTAAATATTTAAAGGAAAAAAAGATTATGGCATTATTATTATTATTTACATTTGCGAATTTCTTGATGCAGGGTGAGATTTCTAGGTTCTCGAGGACCTACTAG

mRNA sequence

ATGAACGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCTGAGGGCACCAAGAAGGTTTCATACGAGAGAGACATGAAGATCATGAACGCGACGACCTTTATATTGGAAAGAGAGGATCATACCGTTGGAAACATCTTCCGCATACAACTTCACAGATATGATAATGTGTTGTTTGTTGGCTACCAGCTTACTCGCCCTCTTAAGTACATAATACTTGTCCGGATACACACGACTAGCCAGTCTTCACCGATGCAGGCGTATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATACGAACTCGAGGGTGAGATTTCTAGGTTCTCGAGGACCTACTAG

Coding sequence (CDS)

ATGAACGTCCCCGATCGCTACGAGCGCTTCGTCGTCCCTGAGGGCACCAAGAAGGTTTCATACGAGAGAGACATGAAGATCATGAACGCGACGACCTTTATATTGGAAAGAGAGGATCATACCGTTGGAAACATCTTCCGCATACAACTTCACAGATATGATAATGTGTTGTTTGTTGGCTACCAGCTTACTCGCCCTCTTAAGTACATAATACTTGTCCGGATACACACGACTAGCCAGTCTTCACCGATGCAGGCGTATAATCAGGCTATCAATGATTTGGACAAGGAGCTTGACCTTTTGAAATACGAACTCGAGGGTGAGATTTCTAGGTTCTCGAGGACCTACTAG

Protein sequence

MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVGYQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY

Homology

[Close]

BLAST of Tan0005165 vs. ExPASy Swiss-Prot
Match: Q38859 (DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=3702 GN=NRPB11 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.6e-45
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P+RYERFVVPEGTKKVSY+RD KI+NA +F +EREDHT+GNI R+QLHR +NVLF G
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY I+VRIHTTSQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Tan0005165 vs. ExPASy Swiss-Prot
Match: O08740 (DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.7e-20
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P  +E F++ EG KK++  +D K+ NA  F + +EDHT+GNI + QL +   VLF G
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEI 110
           Y++  PL++ I++R+ TT   SP +A+  AI DL  EL LL+    G I
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRGAI 109

[Close]

BLAST of Tan0005165 vs. ExPASy Swiss-Prot
Match: Q7PVQ9 (DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae OX=7165 GN=Rpb11 PE=3 SV=2)

HSP 1 Score: 99.0 bits (245), Expect = 3.8e-20
Identity = 49/102 (48.04%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P  +E F++ EG KK+  E DMK+ NA  F + +EDHT+GN+ R QL +  NVLF G
Sbjct: 1   MNAPPTFESFLLYEGEKKIIKELDMKVPNAAIFTVNKEDHTLGNMIRNQLLKDPNVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLK 103
           Y+L  PL++  ++RI TTS+ SP +A+  AI DL  EL L +
Sbjct: 61  YKLPHPLEHKFVLRIQTTSEYSPHEAFMNAITDLLSELSLFE 102

[Close]

BLAST of Tan0005165 vs. ExPASy Swiss-Prot
Match: Q32P79 (DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P  +E F++ EG KK++  +D K+ NA  F + +EDHT+GNI + QL +   VLF G
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLK 103
           Y++  PL++ I++R+ TT   SP +A+  AI DL  EL LL+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Tan0005165 vs. ExPASy Swiss-Prot
Match: P52435 (DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J PE=1 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 1.1e-19
Identity = 45/102 (44.12%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P  +E F++ EG KK++  +D K+ NA  F + +EDHT+GNI + QL +   VLF G
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLK 103
           Y++  PL++ I++R+ TT   SP +A+  AI DL  EL LL+
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLE 102

[Close]

BLAST of Tan0005165 vs. NCBI nr
Match: XP_004135939.1 (DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus] >KAE8646398.1 hypothetical protein Csa_016830 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.9e-49
Identity = 101/116 (87.07%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+GNI R+QLHR DNVLF G
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELEGEISRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRAY 116

[Close]

BLAST of Tan0005165 vs. NCBI nr
Match: XP_038899336.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida])

HSP 1 Score: 202.6 bits (514), Expect = 1.8e-48
Identity = 100/116 (86.21%), Postives = 104/116 (89.66%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+G+I R+QLHR DNVLF G
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGHILRMQLHRDDNVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELEGEISRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGEISRFSRNY 116

[Close]

BLAST of Tan0005165 vs. NCBI nr
Match: XP_008461312.1 (PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+GNI R+QLHR DNVLF G
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELE EISRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of Tan0005165 vs. NCBI nr
Match: KAG6593293.1 (DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-47
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  
Sbjct: 16  MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 75

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELEG  SRFSRTY
Sbjct: 76  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 131

[Close]

BLAST of Tan0005165 vs. NCBI nr
Match: XP_022960210.1 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita moschata] >XP_023514374.1 DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita pepo subsp. pepo] >KAG7025644.1 DNA-directed RNA polymerases II, IV and V subunit 11 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 199.1 bits (505), Expect = 2.0e-47
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELEG  SRFSRTY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of Tan0005165 vs. ExPASy TrEMBL
Match: A0A1S3CFN3 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=3656 GN=LOC103499938 PE=3 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.2e-48
Identity = 100/116 (86.21%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHT+GNI R+QLHR DNVLF G
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTIGNILRMQLHRDDNVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELE EISRFSR Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELESEISRFSRAY 116

[Close]

BLAST of Tan0005165 vs. ExPASy TrEMBL
Match: A0A6J1H8G6 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 9.9e-48
Identity = 98/116 (84.48%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELEG  SRFSRTY
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 116

[Close]

BLAST of Tan0005165 vs. ExPASy TrEMBL
Match: A0A6J1DA06 (DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia OX=3673 GN=LOC111019017 PE=3 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 1.3e-47
Identity = 97/116 (83.62%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFILEREDHTVGNI R+QLHR DNVLF  
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFILEREDHTVGNILRMQLHRDDNVLFAA 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY IL+RIHT SQSSPMQAYNQA+NDLDKELD LK+ELE E+SRFSR Y
Sbjct: 61  YQLPHPLKYRILIRIHTASQSSPMQAYNQAVNDLDKELDHLKFELESELSRFSRAY 116

[Close]

BLAST of Tan0005165 vs. ExPASy TrEMBL
Match: A0A6J1KX24 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111497917 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.9e-47
Identity = 97/116 (83.62%), Postives = 102/116 (87.93%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVRI T SQSSPMQAYNQAINDLDKELD+LKYELEG  SRFSR+Y
Sbjct: 61  YQLPHPLKYRILVRIQTASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRSY 116

[Close]

BLAST of Tan0005165 vs. ExPASy TrEMBL
Match: A0A6J1H6T9 (DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111461018 PE=3 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 9.3e-46
Identity = 97/116 (83.62%), Postives = 101/116 (87.07%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MNVPDRYERFVVPEG KKVSYERD KIMNA TFI+EREDHT+GNI R+QLHR DNVLF  
Sbjct: 1   MNVPDRYERFVVPEGAKKVSYERDTKIMNAATFIVEREDHTIGNIIRMQLHRDDNVLFAA 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY ILVR  T SQSSPMQAYNQAINDLDKELD+LKYELEG  SRFSRTY
Sbjct: 61  YQLPHPLKYRILVR--TASQSSPMQAYNQAINDLDKELDVLKYELEGAFSRFSRTY 114

[Close]

BLAST of Tan0005165 vs. TAIR 10
Match: AT3G52090.1 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 182.6 bits (462), Expect = 1.8e-46
Identity = 86/116 (74.14%), Postives = 100/116 (86.21%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P+RYERFVVPEGTKKVSY+RD KI+NA +F +EREDHT+GNI R+QLHR +NVLF G
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLTRPLKYIILVRIHTTSQSSPMQAYNQAINDLDKELDLLKYELEGEISRFSRTY 117
           YQL  PLKY I+VRIHTTSQSSPMQAYNQAINDLDKELD LK + E E+++FS  +
Sbjct: 61  YQLPHPLKYKIIVRIHTTSQSSPMQAYNQAINDLDKELDYLKNQFEAEVAKFSNQF 116

[Close]

BLAST of Tan0005165 vs. TAIR 10
Match: AT3G52090.2 (DNA-directed RNA polymerase, RBP11-like )

HSP 1 Score: 166.8 bits (421), Expect = 1.0e-41
Identity = 86/146 (58.90%), Postives = 100/146 (68.49%), Query Frame = 0


Query: 1   MNVPDRYERFVVPEGTKKVSYERDMKIMNATTFILEREDHTVGNIFRIQLHRYDNVLFVG 60
           MN P+RYERFVVPEGTKKVSY+RD KI+NA +F +EREDHT+GNI R+QLHR +NVLF G
Sbjct: 1   MNAPERYERFVVPEGTKKVSYDRDTKIINAASFTVEREDHTIGNIVRMQLHRDENVLFAG 60

Query: 61  YQLTRPLKYIILVR------------------------------IHTTSQSSPMQAYNQA 117
           YQL  PLKY I+VR                              IHTTSQSSPMQAYNQA
Sbjct: 61  YQLPHPLKYKIIVRDPKDWFRNLKVVYGCLETVNISWFKLLVLTIHTTSQSSPMQAYNQA 120

The following BLAST results are available for this feature:

BLAST of Tan0005165 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q38859	2.6e-45	74.14	DNA-directed RNA polymerases II, IV and V subunit 11 OS=Arabidopsis thaliana OX=...	[more]
O08740	1.7e-20	43.12	DNA-directed RNA polymerase II subunit RPB11 OS=Mus musculus OX=10090 GN=Polr2j ...	[more]
Q7PVQ9	3.8e-20	48.04	DNA-directed RNA polymerase II subunit RPB11 OS=Anopheles gambiae OX=7165 GN=Rpb...	[more]
Q32P79	1.1e-19	44.12	DNA-directed RNA polymerase II subunit RPB11 OS=Bos taurus OX=9913 GN=POLR2J PE=...	[more]
P52435	1.1e-19	44.12	DNA-directed RNA polymerase II subunit RPB11-a OS=Homo sapiens OX=9606 GN=POLR2J...	[more]

BLAST of Tan0005165 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004135939.1	4.9e-49	87.07	DNA-directed RNA polymerases II, IV and V subunit 11 isoform X3 [Cucumis sativus...	[more]
XP_038899336.1	1.8e-48	86.21	DNA-directed RNA polymerases II, IV and V subunit 11-like [Benincasa hispida]	[more]
XP_008461312.1	2.4e-48	86.21	PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 11-like [Cucumis me...	[more]
KAG6593293.1	2.0e-47	84.48	DNA-directed RNA polymerases II, IV and V subunit 11, partial [Cucurbita argyros...	[more]
XP_022960210.1	2.0e-47	84.48	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 [Cucurbita ...	[more]

BLAST of Tan0005165 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CFN3	1.2e-48	86.21	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Cucumis melo OX=365...	[more]
A0A6J1H8G6	9.9e-48	84.48	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1DA06	1.3e-47	83.62	DNA-directed RNA polymerases II, IV and V subunit 11-like OS=Momordica charantia...	[more]
A0A6J1KX24	2.9e-47	83.62	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X1 OS=Cucurbit...	[more]
A0A6J1H6T9	9.3e-46	83.62	DNA-directed RNA polymerases II, IV and V subunit 11-like isoform X2 OS=Cucurbit...	[more]

BLAST of Tan0005165 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G52090.1	1.8e-46	74.14	DNA-directed RNA polymerase, RBP11-like	[more]
AT3G52090.2	1.0e-41	58.90	DNA-directed RNA polymerase, RBP11-like	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 84..104
None	No IPR available	PANTHER	PTHR13946	DNA-DIRECTED RNA POLYMERASE I,II,III	coord: 1..110
None	No IPR available	PANTHER	PTHR13946:SF16	DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11	coord: 1..110
IPR009025	DNA-directed RNA polymerase, RBP11-like dimerisation domain	PFAM	PF13656	RNA_pol_L_2	coord: 31..102 e-value: 2.1E-16 score: 59.5
IPR036603	RNA polymerase, RBP11-like subunit	GENE3D	3.30.1360.10		coord: 1..115 e-value: 5.2E-40 score: 137.8
IPR036603	RNA polymerase, RBP11-like subunit	SUPERFAMILY	55257	RBP11-like subunits of RNA polymerase	coord: 1..112
IPR037685	RNA polymerase RBP11	CDD	cd06926	RNAP_II_RPB11	coord: 13..102 e-value: 4.94362E-38 score: 121.545

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005165.1	Tan0005165.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005665	RNA polymerase II, core complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0001055	RNA polymerase II activity