Tan0005152 (gene) Snake gourd v1

Overview


Name	Tan0005152
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ribonuclease H-like domain containing protein
Location	LG01: 109777171 .. 109778188 (+)
RNA-Seq Expression	Tan0005152
Synteny	Tan0005152

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGATTAAGTGTTTGGAGGCCATGACAATCAGGGAAGGCATGCAACATTTAATTTCCTTTCCTGATCAAATGCCTTCCCCCCTGGTTATTCAATCTGACTCCTCTGAAGCTGTAAGAGCGATTATCTCCAGAAATGAAGACCTCTCGGAGATCCGACTGATTGTGGAAGATATTGACAACCTTCGTTCGAAGCTTAACTCGGTGGTTTTTGAAAAATGCACAAGGTCTGGTAACAGGGTGGCTCATGCCCTCGCCAGAATAGCCATGGAAGCTTCTCCCCCGTCGACTTGCATGGAGGAAGCGAAAGTTTCTAGACCTGAGGAAGGCGTCTTCTTGTCTTCTGTTTTTCCTTCTTGGTTTGTTAATCTCATTAATGAGGACGCTGGCAGTTGTGTTTTTGGTAATTAATATTATTTTCGTTTCAAAAAAAAAAACATGACAAGAATTTCACTCCCGTTTGTACTATGCCTTTTTTAATTTTATAATTAAACATACTACAAGTGAGTTTTTATTTTACTAATAAAAAATACATCCCAAGTGAAATTCTGAAGTTTTAATCTATATCAAACATTGCATATATTAGGGGTGAGCAAAAAAATATCGAAAATCGACTCGACTGACCGAAACCGACCAAATCAAGGGCGGTCGGTCGGTTTTGTGTCTTTTTCGGTTGGGGTCGGTTTTGTGCTTCACAAAATCGACCGATAATTTTTAAAAAATTATATATATATATAATATTATTATTATTAAAAATAAAAAAACTAAAAAGATTTTCTCAAAATATATTAAATAATAATTAAATAAATATTTTAAAATATATATGACCGGTCGGTCAGTCAATTTTGGCAAGGTTTTTTTTAAAAAAAAAAAAATCTCGACCGAACCGACCGACCTTGGTCGGTTCGGGGGTCAGTTGTGATCGAAAACTAACTCCGACCGACCGATGTTCACCCTAGCATATATATGTCTATATTGTGTTAAGTTAACTTTGATAGAATATGATTTTGAAAAATGA

mRNA sequence

ATGCCGATTAAGTGTTTGGAGGCCATGACAATCAGGGAAGGCATGCAACATTTAATTTCCTTTCCTGATCAAATGCCTTCCCCCCTGGTTATTCAATCTGACTCCTCTGAAGCTGTAAGAGCGATTATCTCCAGAAATGAAGACCTCTCGGAGATCCGACTGATTGTGGAAGATATTGACAACCTTCGTTCGAAGCTTAACTCGGTGGTTTTTGAAAAATGCACAAGGTCTGGTAACAGGGTGGCTCATGCCCTCGCCAGAATAGCCATGGAAGCTTCTCCCCCGTCGACTTGCATGGAGGAAGCGAAAGTTTCTAGACCTGAGGAAGGCGTCTTCTTGTCTTCTGTTTTTCCTTCTTGGTTTGTTAATCTCATTAATGAGGACGCTGGCAGTTGTGTTTTTGAATATGATTTTGAAAAATGA

Coding sequence (CDS)

ATGCCGATTAAGTGTTTGGAGGCCATGACAATCAGGGAAGGCATGCAACATTTAATTTCCTTTCCTGATCAAATGCCTTCCCCCCTGGTTATTCAATCTGACTCCTCTGAAGCTGTAAGAGCGATTATCTCCAGAAATGAAGACCTCTCGGAGATCCGACTGATTGTGGAAGATATTGACAACCTTCGTTCGAAGCTTAACTCGGTGGTTTTTGAAAAATGCACAAGGTCTGGTAACAGGGTGGCTCATGCCCTCGCCAGAATAGCCATGGAAGCTTCTCCCCCGTCGACTTGCATGGAGGAAGCGAAAGTTTCTAGACCTGAGGAAGGCGTCTTCTTGTCTTCTGTTTTTCCTTCTTGGTTTGTTAATCTCATTAATGAGGACGCTGGCAGTTGTGTTTTTGAATATGATTTTGAAAAATGA

Protein sequence

MPIKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNLRSKLNSVVFEKCTRSGNRVAHALARIAMEASPPSTCMEEAKVSRPEEGVFLSSVFPSWFVNLINEDAGSCVFEYDFEK

Homology

[Close]

BLAST of Tan0005152 vs. NCBI nr
Match: PON36736.1 (Ribonuclease H-like domain containing protein [Parasponia andersonii])

HSP 1 Score: 54.3 bits (129), Expect = 9.8e-04
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 3   IKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNL 62
           ++  EAM IR+G++   +  D    PL+I+SD+S  VR II+ +  L+EI +++ DI N 
Sbjct: 35  VEISEAMAIRKGLK---TARDYGLQPLLIESDASSVVRLIINGSHSLAEISVVIHDIQNF 94

Query: 63  RSKLNSVVFEKCTRSGNRVAHALAR 88
            + + S V      S NR AHA A+
Sbjct: 95  LASMPSSVMSHILGSCNRAAHAAAK 116

[Close]

BLAST of Tan0005152 vs. ExPASy TrEMBL
Match: A0A2P5AJL1 (Ribonuclease H-like domain containing protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_325940 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.8e-04
Identity = 32/85 (37.65%), Postives = 50/85 (58.82%), Query Frame = 0


Query: 3   IKCLEAMTIREGMQHLISFPDQMPSPLVIQSDSSEAVRAIISRNEDLSEIRLIVEDIDNL 62
           ++  EAM IR+G++   +  D    PL+I+SD+S  VR II+ +  L+EI +++ DI N 
Sbjct: 35  VEISEAMAIRKGLK---TARDYGLQPLLIESDASSVVRLIINGSHSLAEISVVIHDIQNF 94

Query: 63  RSKLNSVVFEKCTRSGNRVAHALAR 88
            + + S V      S NR AHA A+
Sbjct: 95  LASMPSSVMSHILGSCNRAAHAAAK 116

The following BLAST results are available for this feature:

BLAST of Tan0005152 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0005152 vs. NCBI nr


Match Name	E-value	Identity	Description
PON36736.1	9.8e-04	37.65	Ribonuclease H-like domain containing protein [Parasponia andersonii]	[more]

BLAST of Tan0005152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5AJL1	4.8e-04	37.65	Ribonuclease H-like domain containing protein OS=Parasponia andersonii OX=3476 G...	[more]

BLAST of Tan0005152 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 9..87 e-value: 5.9E-10 score: 39.0
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 4..95 e-value: 4.5E-9 score: 38.3
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 7..87 e-value: 2.55349E-16 score: 68.1096
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 6..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005152.1	Tan0005152.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity