Tan0005140 (gene) Snake gourd v1

Overview


Name	Tan0005140
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase domain-containing protein
Location	LG06: 3344488 .. 3344808 (+)
RNA-Seq Expression	Tan0005140
Synteny	Tan0005140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGTATTTATACGGTTTCGTTCTCGATTCTGCTGAATGGCTCGCCAACAGGTTTAGTCACACCATCTCGAGGACTACGACAAGGTGATCCTTTGTCCCCCTATCTCTTCCTTTTATGTGTTGAAGGTTTGTCTGCACTAGTAAAGGCAGAGTCAGATTGTGAGCGACTATCAGGGGTGGCTATTTCATCTAAAAGTCCCAAGGTAACCCACCTATTCTTCGCTGATGATGGCCTTTTTTTTATACGGGCAAATGCAAATGAATTTGGGTTGTTAAAGACTATTTTTATTTGTATGAGCAAGCGTCTGGTCAGTTAA

mRNA sequence

ATGAATTGTATTTATACGGTTTCGTTCTCGATTCTGCTGAATGGCTCGCCAACAGGTTTAGTCACACCATCTCGAGGACTACGACAAGGTGATCCTTTGTCCCCCTATCTCTTCCTTTTATGTGTTGAAGGTTTGTCTGCACTAGTAAAGGCAGAGTCAGATTGTGAGCGACTATCAGGGGTGGCTATTTCATCTAAAAGTCCCAAGGTAACCCACCTATTCTTCGCTGATGATGGCCTTTTTTTTATACGGGCAAATGCAAATGAATTTGGGTTGTTAAAGACTATTTTTATTTGTATGAGCAAGCGTCTGGTCAGTTAA

Coding sequence (CDS)

ATGAATTGTATTTATACGGTTTCGTTCTCGATTCTGCTGAATGGCTCGCCAACAGGTTTAGTCACACCATCTCGAGGACTACGACAAGGTGATCCTTTGTCCCCCTATCTCTTCCTTTTATGTGTTGAAGGTTTGTCTGCACTAGTAAAGGCAGAGTCAGATTGTGAGCGACTATCAGGGGTGGCTATTTCATCTAAAAGTCCCAAGGTAACCCACCTATTCTTCGCTGATGATGGCCTTTTTTTTATACGGGCAAATGCAAATGAATTTGGGTTGTTAAAGACTATTTTTATTTGTATGAGCAAGCGTCTGGTCAGTTAA

Protein sequence

MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSGVAISSKSPKVTHLFFADDGLFFIRANANEFGLLKTIFICMSKRLVS

Homology

[Close]

BLAST of Tan0005140 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 8.5e-19
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 12 LLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSGVAISSKSPKVT 71
          ++NG+P GLVTPSRGLRQGDPLSPYLF+LC E LS L +   +  RL G+ +S+ SP++ 
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 72 HLFFADD 79
          HL FADD
Sbjct: 73 HLLFADD 79

[Close]

BLAST of Tan0005140 vs. NCBI nr
Match: XP_023914298.1 (uncharacterized protein LOC112025844 [Quercus suber])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 53/102 (51.96%), Postives = 75/102 (73.53%), Query Frame = 0


Query: 1   MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
           + CI TVS+S+L+NG P+ ++ PSRGLRQGDPLSPYLFL+C EGL  L++  +D  ++ G
Sbjct: 612 LECISTVSYSVLINGVPSDIIQPSRGLRQGDPLSPYLFLICSEGLHGLIQKAADTRQIRG 671

Query: 61  VAISSKSPKVTHLFFADDGLFFIRANANEFGLLKTIFICMSK 103
           V+I  K P++THLFFADD L F RA+ +E   ++T+ +   K
Sbjct: 672 VSICKKGPRLTHLFFADDSLVFCRASIDECKKIQTLLLSYEK 713

[Close]

BLAST of Tan0005140 vs. NCBI nr
Match: XP_030970329.1 (uncharacterized protein LOC115990658 [Quercus lobata])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 54/96 (56.25%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1   MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
           M+C+ TVS+ + +NG P G + PSRG+RQGDPLSPYLFLLCVEGLSAL+K E +  RL G
Sbjct: 219 MSCVTTVSYFVKINGKPKGHIVPSRGIRQGDPLSPYLFLLCVEGLSALIKKEVENGRLGG 278

Query: 61  VAISSKSPKVTHLFFADDGLFFIRANANEFGLLKTI 97
           VA+  + P ++HLFFADD L F +A+  E   L+ +
Sbjct: 279 VAVFRRGPIISHLFFADDSLIFCKASLEECDALQRV 314

[Close]

BLAST of Tan0005140 vs. NCBI nr
Match: XP_030963556.1 (uncharacterized protein LOC115984674 [Quercus lobata])

HSP 1 Score: 119.0 bits (297), Expect = 2.5e-23
Identity = 56/95 (58.95%), Postives = 71/95 (74.74%), Query Frame = 0


Query: 2   NCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSGV 61
           +CI +VSFS+L+NG P G  TP+RGLRQGDPLSPYLFLLC EGL +L++       + GV
Sbjct: 593 SCIRSVSFSVLVNGEPHGNFTPNRGLRQGDPLSPYLFLLCAEGLHSLIQQAEISGSIKGV 652

Query: 62  AISSKSPKVTHLFFADDGLFFIRANANEFGLLKTI 97
           ++ S SPKV+HLFFADD L F RAN++E G +  I
Sbjct: 653 SLCSTSPKVSHLFFADDSLLFCRANSHEAGSIMEI 687

[Close]

BLAST of Tan0005140 vs. NCBI nr
Match: KAG7644128.1 (Reverse transcriptase zinc-binding domain [Arabidopsis suecica])

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 55/96 (57.29%), Postives = 71/96 (73.96%), Query Frame = 0


Query: 1    MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
            MNCI +VSFSIL+NGSP G +TP+RG+RQGDPLSPYLF+LC E LS ++K   +  +L G
Sbjct: 1083 MNCISSVSFSILINGSPYGHITPTRGIRQGDPLSPYLFILCAEVLSHMMKQAENNNQLKG 1142

Query: 61   VAISSKSPKVTHLFFADDGLFFIRANANEFGLLKTI 97
            + IS+++P + HL FADD LFF  AN      +KTI
Sbjct: 1143 IKISTRAPSLNHLLFADDSLFFTLANDRSCKAIKTI 1178

[Close]

BLAST of Tan0005140 vs. NCBI nr
Match: PNY15111.1 (ribonuclease H [Trifolium pratense])

HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 53/96 (55.21%), Postives = 72/96 (75.00%), Query Frame = 0


Query: 1   MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
           M CI TVS+ IL+NG P+ L TP RGLRQGDPLSPYLF+LC + LS LVK +++   + G
Sbjct: 582 MKCICTVSYQILINGQPSKLFTPERGLRQGDPLSPYLFILCADVLSGLVKKQAETGSMHG 641

Query: 61  VAISSKSPKVTHLFFADDGLFFIRANANEFGLLKTI 97
           + I+ ++PK++HLFFADD L F RA+A E G++  +
Sbjct: 642 IQIARQAPKISHLFFADDSLLFARASAAEAGVILNV 677

[Close]

BLAST of Tan0005140 vs. ExPASy TrEMBL
Match: A0A2N9GDB5 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS25251 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 0


Query: 1    MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
            M CI TVS+SIL+NG P G + PSRGLRQGDPLSPYLFLLC EGL +L++ E +   L G
Sbjct: 1101 MECISTVSYSILVNGEPHGYIKPSRGLRQGDPLSPYLFLLCAEGLHSLIQKEKNAGTLKG 1160

Query: 61   VAISSKSPKVTHLFFADDGLFFIRANANEFGLLKTI 97
            V+IS   PK+THLFFADD L F +A   +   +++I
Sbjct: 1161 VSISRGGPKITHLFFADDSLLFCKATTGDVDRIQSI 1196

[Close]

BLAST of Tan0005140 vs. ExPASy TrEMBL
Match: A0A2N9FT83 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21809 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.1e-24
Identity = 55/89 (61.80%), Postives = 68/89 (76.40%), Query Frame = 0


Query: 1    MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
            M CI TVS+S+L+NG PTG +TPSRGLRQGDP+SPYLFL+C EGL+ L+   +    + G
Sbjct: 1587 MECITTVSYSLLINGEPTGHITPSRGLRQGDPISPYLFLICAEGLNGLLNKAASQGEIHG 1646

Query: 61   VAISSKSPKVTHLFFADDGLFFIRANANE 90
            V+IS +SPK+THLFFADD L F RA   E
Sbjct: 1647 VSISRRSPKLTHLFFADDSLLFCRATQAE 1675

[Close]

BLAST of Tan0005140 vs. ExPASy TrEMBL
Match: A0A2N9GC56 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24870 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 7.0e-24
Identity = 56/93 (60.22%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 1   MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
           MNCI +VS+S+++NG P G++ PSRGLRQGDPLSPYLFLLC EGLSAL+    +   L G
Sbjct: 892 MNCIRSVSYSVVVNGEPNGMIYPSRGLRQGDPLSPYLFLLCGEGLSALLHRAEESGELHG 951

Query: 61  VAISSKSPKVTHLFFADDGLFFIRANANEFGLL 94
           VA S   PK++HLFFADD L F  A   E G+L
Sbjct: 952 VACSRGGPKISHLFFADDSLLFCNATVEECGVL 984

[Close]

BLAST of Tan0005140 vs. ExPASy TrEMBL
Match: A0A2N9EMZ0 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS8088 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.1e-24
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1   MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
           M CI TVS+SIL+NG P G + PSRGLRQGDPLSPYLFLLC EGL +L++ E     L G
Sbjct: 188 MECISTVSYSILVNGEPHGYIKPSRGLRQGDPLSPYLFLLCAEGLHSLIQKEKISGALKG 247

Query: 61  VAISSKSPKVTHLFFADDGLFFIRANANE 90
           V+IS   PK+THLFFADD L F +A  ++
Sbjct: 248 VSISRSGPKITHLFFADDSLLFCKATTDD 276

[Close]

BLAST of Tan0005140 vs. ExPASy TrEMBL
Match: A0A2N9HYE3 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS44563 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 9.1e-24
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 1    MNCIYTVSFSILLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSG 60
            M CI TVS+SIL+NG P G + PSRGLRQGDPLSPYLFLLC EGL +L++ E     L G
Sbjct: 1069 MECISTVSYSILVNGEPHGYIKPSRGLRQGDPLSPYLFLLCAEGLHSLIQKEKISGALKG 1128

Query: 61   VAISSKSPKVTHLFFADDGLFFIRANANE 90
            V+IS   PK+THLFFADD L F +A  ++
Sbjct: 1129 VSISRSGPKITHLFFADDSLLFCKATTDD 1157

[Close]

BLAST of Tan0005140 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 94.4 bits (233), Expect = 6.0e-20
Identity = 41/67 (61.19%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 12 LLNGSPTGLVTPSRGLRQGDPLSPYLFLLCVEGLSALVKAESDCERLSGVAISSKSPKVT 71
          ++NG+P GLVTPSRGLRQGDPLSPYLF+LC E LS L +   +  RL G+ +S+ SP++ 
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 72 HLFFADD 79
          HL FADD
Sbjct: 73 HLLFADD 79

The following BLAST results are available for this feature:

BLAST of Tan0005140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92555	8.5e-19	61.19	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Tan0005140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023914298.1	1.1e-23	51.96	uncharacterized protein LOC112025844 [Quercus suber]	[more]
XP_030970329.1	2.5e-23	56.25	uncharacterized protein LOC115990658 [Quercus lobata]	[more]
XP_030963556.1	2.5e-23	58.95	uncharacterized protein LOC115984674 [Quercus lobata]	[more]
KAG7644128.1	4.2e-23	57.29	Reverse transcriptase zinc-binding domain [Arabidopsis suecica]	[more]
PNY15111.1	4.2e-23	55.21	ribonuclease H [Trifolium pratense]	[more]

BLAST of Tan0005140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9GDB5	2.4e-24	58.33	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9FT83	3.1e-24	61.80	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9GC56	7.0e-24	60.22	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9EMZ0	9.1e-24	61.80	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]
A0A2N9HYE3	9.1e-24	61.80	Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F...	[more]

BLAST of Tan0005140 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	6.0e-20	61.19	RNA-directed DNA polymerase (reverse transcriptase)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..98 e-value: 1.2E-11 score: 44.6
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 1..100
None	No IPR available	PANTHER	PTHR33116:SF45	SUBFAMILY NOT NAMED	coord: 1..100

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005140.1	Tan0005140.1	mRNA