Tan0005020 (gene) Snake gourd v1

Overview


Name	Tan0005020
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	SOSS complex subunit B homolog
Location	LG06: 7351268 .. 7353155 (-)
RNA-Seq Expression	Tan0005020
Synteny	Tan0005020

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGGTTTCAAAAGTGATTTTAAAATTAATAAATTACTAAAAAAGACATTTTTTATTTAATATATTAAGTAAGAAAATACGTACAATAAATATCAAAATAAAAATAAAAATCTCATTTACTCTGTAAATGCTTGTATCATTACAAATCAGTAAATGCTCGTATCATTAAAATCTCATTTACTCTACAAATTGATGCAACAACAATTTTCACTTGTTTTTCAAAAGGAAAACGATGCATATAATGTACCATTCACCATCTATTTTTTCAAACACCAAATGTCCTCTCAATTGGCTTTATCCATAATTTCTTCCCGTCTTTTCACTAATCTAACTATCACTCCCAAACATGTCCTAAATTTCAAATTTGAAAAGTTAAAATGAAACTTTTCATAGTTTAGGAGGGAGAGAGGAAGGAAATAGTGGGGGAGAGAAAGAAGAAACGAAAAAATTGAGTGAAAGAGCGAGAGAGAGAGAGAAAGGACAGATCAGAGAGATCTCTCCTGCCGTCGGAACTTCTCATCTTTCGCCGGAAAACTGTGACCGTTCGCCCAAAGTATCCCACCAGTCGGTAAAGTTTCTATTTTTCTCTCTCTCTCTCTCTCTTTTTTTATGTGTTTTATGTTACTGTCATTTTGACACAGTTCTGGGCTTCGAATCATAGAGTTCGATTTCCATCTTTCTTATACCATGAACCTTAGTTTCCTTCTCTGAAAACTACTGATTTTCATTTGCTTTGGGGAAAAAATCTATCGAAGGAATTAGCTTCTACAGATGGCCATATGTGAAGCATCCTCTACCTATTCGTAGAAATGACTGAATGAAGTTTTAGAACATATGATGTCTGTTACCTTTAGTTTTAGTCTATGTTTAATATTATCATTATTCAAATTGCATTTTTTAACTTTTAGATTATACCTTTTTTAGGAAAAATATGAATGTATACTATGAACTTGACACAATATATCAATCTAAAGTACACCCTTAGATAAGTATTGTAATATTTACCTCAAACTTGAAAAATGATTGCAGTTTTTCATTTTCTTTCGTGTGATAAGTTTTCATTGAAAGAATGGTTAAAAAGTATTGTTATGTGCCTACCATGAATCATAAAACATGTGTATGGTACGAGATTGACTTGATTTTGTGGATTGATCAAACTTAATTTCGTACAGATTGTGCTTGAGTGGAGTGGATTGAATCGAATATTGTAAGGTTGTTTGTTTGTGGGAGTTTAAAAAGTAGATAAATAATGATATCTCTGAAGGAGTTGGTGCCAGCAGCCCAGAACAATGTGAATGCAGAATTCATAGTTGTGGAGAAAGGGAAGACAACAATAGAAGGACAAAACAAGGCATGTCAAACACTGGTGGGCGACAAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTGGTCGAGCCGAGCGACATCATACGGTTGACGAATGGGATATTCTCCTACACACGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAAATAGAAAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACCACCGACTCCAAGAAGTATGTCAAGGAATCTGTTCTATCTCCCTATTCTCGCATCTTTCCGCCAAACCATTGATATGGTTGTGGTTGTGGTTGTGATTGTGGACTCAATTTGAGTGAATGTGTTTTTCAACTAATGCAAATAAAAGAGCAGGATTTTGAAGATGCAATGGAAATGATGTATACTGTATTGAGCAAAACAAGAGGGATAAACACACAAATCTTTTGTGGTCCACAATAATCAAACAGACATCAACCCAATTTTTTACTACATATTTGAAAGCCACGTAGTTCTAGC

mRNA sequence

TTTGGTTTCAAAAGTGATTTTAAAATTAATAAATTACTAAAAAAGACATTTTTTATTTAATATATTAAGTAAGAAAATACGTACAATAAATATCAAAATAAAAATAAAAATCTCATTTACTCTGTAAATGCTTGTATCATTACAAATCAGTAAATGCTCGTATCATTAAAATCTCATTTACTCTACAAATTGATGCAACAACAATTTTCACTTGTTTTTCAAAAGGAAAACGATGCATATAATGTACCATTCACCATCTATTTTTTCAAACACCAAATGTCCTCTCAATTGGCTTTATCCATAATTTCTTCCCGTCTTTTCACTAATCTAACTATCACTCCCAAACATGTCCTAAATTTCAAATTTGAAAAGTTAAAATGAAACTTTTCATAGTTTAGGAGGGAGAGAGGAAGGAAATAGTGGGGGAGAGAAAGAAGAAACGAAAAAATTGAGTGAAAGAGCGAGAGAGAGAGAGAAAGGACAGATCAGAGAGATCTCTCCTGCCGTCGGAACTTCTCATCTTTCGCCGGAAAACTGTGACCGTTCGCCCAAAGTATCCCACCAGTCGGTAAAGTTTCTATTTTTCTCTCTCTCTCTCTCTCTTTTTTTATGTGTTTTATGTTACTGTCATTTTGACACAGTTCTGGGCTTCGAATCATAGAGTTCGATTTCCATCTTTCTTATACCATGAACCTTAGTTTCCTTCTCTGAAAACTACTGATTTTCATTTGCTTTGGGGAAAAAATCTATCGAAGGAATTAGCTTCTACAGATGGCCATATGTGAAGCATCCTCTACCTATTCGTAGAAATGACTGAATGAAGTTTTAGAACATATGATGTCTGTTACCTTTAGTTTTAGTCTATGTTTAATATTATCATTATTCAAATTGCATTTTTTAACTTTTAGATTATACCTTTTTTAGGAAAAATATGAATGTATACTATGAACTTGACACAATATATCAATCTAAAGTACACCCTTAGATAAGTATTGTAATATTTACCTCAAACTTGAAAAATGATTGCAGTTTTTCATTTTCTTTCGTGTGATAAGTTTTCATTGAAAGAATGGTTAAAAAGTATTGTTATGTGCCTACCATGAATCATAAAACATGTGTATGGTACGAGATTGACTTGATTTTGTGGATTGATCAAACTTAATTTCGTACAGATTGTGCTTGAGTGGAGTGGATTGAATCGAATATTGTAAGGTTGTTTGTTTGTGGGAGTTTAAAAAGTAGATAAATAATGATATCTCTGAAGGAGTTGGTGCCAGCAGCCCAGAACAATGTGAATGCAGAATTCATAGTTGTGGAGAAAGGGAAGACAACAATAGAAGGACAAAACAAGGCATGTCAAACACTGGTGGGCGACAAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTGGTCGAGCCGAGCGACATCATACGGTTGACGAATGGGATATTCTCCTACACACGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAAATAGAAAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACCACCGACTCCAAGAAGTATGTCAAGGAATCTGTTCTATCTCCCTATTCTCGCATCTTTCCGCCAAACCATTGATATGGTTGTGGTTGTGGTTGTGATTGTGGACTCAATTTGAGTGAATGTGTTTTTCAACTAATGCAAATAAAAGAGCAGGATTTTGAAGATGCAATGGAAATGATGTATACTGTATTGAGCAAAACAAGAGGGATAAACACACAAATCTTTTGTGGTCCACAATAATCAAACAGACATCAACCCAATTTTTTACTACATATTTGAAAGCCACGTAGTTCTAGC

Coding sequence (CDS)

ATGATATCTCTGAAGGAGTTGGTGCCAGCAGCCCAGAACAATGTGAATGCAGAATTCATAGTTGTGGAGAAAGGGAAGACAACAATAGAAGGACAAAACAAGGCATGTCAAACACTGGTGGGCGACAAAACAGCAGCGGTTCACTTCCAGCTATGGGGAGACGAGTGCGATGTGGTCGAGCCGAGCGACATCATACGGTTGACGAATGGGATATTCTCCTACACACGAAACAATAATCTGGTGCTGAGGGCAGGGAAGAGAGGGAAAATAGAAAAGGTGGGAGAGTTCAACATGGTGTTTGTAGAGACACCGAATATGAGCGAGATCCATTGGGTTCCCGACACCACCGACTCCAAGAAGTATGTCAAGGAATCTGTTCTATCTCCCTATTCTCGCATCTTTCCGCCAAACCATTGA

Protein sequence

MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKKYVKESVLSPYSRIFPPNH

Homology

[Close]

BLAST of Tan0005020 vs. ExPASy Swiss-Prot
Match: Q54X41 (SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279223 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.3e-14
Identity = 49/137 (35.77%), Postives = 73/137 (53.28%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           +I + E+ P ++ N+N  FIV++KG  T + +    Q LV D TA+++  +W    + ++
Sbjct: 3   LIKVNEIKPYSK-NINCVFIVLDKGPPTKKKEGTIYQVLVADSTASINMTVWDALGEQIQ 62

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHW--VPDTTDS 120
           P DI+RL  G +S      L L  GK G IEK+GEF   FVE PN+S   W    D  + 
Sbjct: 63  PGDILRLKGG-YSNIYIELLNLYVGKTGIIEKIGEFTFPFVEAPNLSSTLWNVHQDPNNP 122

Query: 121 KKYVKESVLSPYSRIFP 136
           K  V     SP+ +  P
Sbjct: 123 KNMVATPKPSPHKQQQP 137

[Close]

BLAST of Tan0005020 vs. ExPASy Swiss-Prot
Match: Q9VM17 (SOSS complex subunit B homolog OS=Drosophila melanogaster OX=7227 GN=CG5181 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 4.8e-14
Identity = 43/108 (39.81%), Postives = 67/108 (62.04%), Query Frame = 0


Query: 2   ISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVE 61
           I +K++ P  + N+N  FIV+E G  T+  +N+  +   VGD TA ++  +W +   ++ 
Sbjct: 7   IPIKDIKPGLK-NINVIFIVLEVGVATVTKENREVRNFKVGDPTACINVSIWDEPGKLIA 66

Query: 62  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 109
           P DI+RLT G  S  R + L L +GK G++ K+GE+ MVF E+ NMSE
Sbjct: 67  PGDIVRLTKGYASIWR-HCLTLYSGKNGEVFKIGEYCMVFNESVNMSE 112

[Close]

BLAST of Tan0005020 vs. ExPASy Swiss-Prot
Match: A6QLK2 (SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 4   LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPS 63
           +K++ P  + N+N  FIV+E G+ T        +T  V DKT +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 64  DIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 109
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Tan0005020 vs. ExPASy Swiss-Prot
Match: Q9BQ15 (SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 4   LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPS 63
           +K++ P  + N+N  FIV+E G+ T        +T  V DKT +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 64  DIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 109
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Tan0005020 vs. ExPASy Swiss-Prot
Match: Q8R2Y9 (SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-12
Identity = 41/106 (38.68%), Postives = 63/106 (59.43%), Query Frame = 0


Query: 4   LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTL-VGDKTAAVHFQLWGDECDVVEPS 63
           +K++ P  + N+N  FIV+E G+ T        +T  V DKT +++  +W D  ++++P 
Sbjct: 7   VKDIKPGLK-NLNLIFIVLETGRVTKTKDGHEVRTCKVADKTGSINISVWDDVGNLIQPG 66

Query: 64  DIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSE 109
           DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E PN SE
Sbjct: 67  DIIRLTKGYASVFK-GCLTLYTGRGGDLQKIGEFCMVYSEVPNFSE 110

[Close]

BLAST of Tan0005020 vs. NCBI nr
Match: XP_023515959.1 (SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 257.3 bits (656), Expect = 7.5e-65
Identity = 121/136 (88.97%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVN +FIV++KG TTIEGQNK CQ+LV D+TAAVHFQLWG+ECDVVE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLDKGMTTIEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDI+RLTNGIFSY+RNNNLVLRAGKRGK+EKVGEFNMVFVETPNMSEIHWVPDTT+SKK
Sbjct: 62  PSDILRLTNGIFSYSRNNNLVLRAGKRGKVEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

[Close]

BLAST of Tan0005020 vs. NCBI nr
Match: XP_022961520.1 (SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex subunit B homolog [Cucurbita moschata] >KAG6590445.1 SOSS complex subunit B-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64
Identity = 121/136 (88.97%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWG+ECDVVE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDI+RLTNGIFSY+RN+NLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTT+SKK
Sbjct: 62  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

[Close]

BLAST of Tan0005020 vs. NCBI nr
Match: XP_038878334.1 (SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878336.1 SOSS complex subunit B homolog [Benincasa hispida] >XP_038878337.1 SOSS complex subunit B homolog [Benincasa hispida])

HSP 1 Score: 253.8 bits (647), Expect = 8.3e-64
Identity = 121/136 (88.97%), Postives = 130/136 (95.59%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MI+LK+LVPAAQNNVN +FIV+EKG T +EGQNKACQ+LV D+TAAVHFQLWGDECDVVE
Sbjct: 2   MIALKDLVPAAQNNVNTQFIVLEKGMTIMEGQNKACQSLVADETAAVHFQLWGDECDVVE 61

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDTT+S K
Sbjct: 62  PSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTTNSNK 121

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

[Close]

BLAST of Tan0005020 vs. NCBI nr
Match: XP_022968811.1 (SOSS complex subunit B homolog [Cucurbita maxima] >XP_022968812.1 SOSS complex subunit B homolog [Cucurbita maxima] >XP_022968813.1 SOSS complex subunit B homolog [Cucurbita maxima])

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 118/136 (86.76%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVN +FIV+EKG TT++GQNK CQ+LV D+TAAVHFQLWG+ECDVVE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMDGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDI+RL NGIFSY+RNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDT++SKK
Sbjct: 62  PSDILRLMNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTSNSKK 121

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESV+SPYSRIFPP
Sbjct: 122 YVKESVVSPYSRIFPP 137

[Close]

BLAST of Tan0005020 vs. NCBI nr
Match: XP_022150258.1 (SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150260.1 SOSS complex subunit B homolog [Momordica charantia] >XP_022150261.1 SOSS complex subunit B homolog [Momordica charantia])

HSP 1 Score: 251.5 bits (641), Expect = 4.1e-63
Identity = 123/138 (89.13%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVNA+FIV++KGKTT EGQNKAC +LV D+TAAVHFQLWGDECD VE
Sbjct: 1   MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVE 60

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDIIRLTNGIFSY+R NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEI WVPDT DSKK
Sbjct: 61  PSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIRWVPDTIDSKK 120

Query: 121 YVKESVLSPYSRIFPPNH 139
           YVKESVLSPYSRIFPPN+
Sbjct: 121 YVKESVLSPYSRIFPPNN 137

[Close]

BLAST of Tan0005020 vs. ExPASy TrEMBL
Match: A0A6J1HAL0 (SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.1e-64
Identity = 121/136 (88.97%), Postives = 132/136 (97.06%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWG+ECDVVE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMEGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDI+RLTNGIFSY+RN+NLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTT+SKK
Sbjct: 62  PSDILRLTNGIFSYSRNSNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTNSKK 121

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESVLSPYSRIFPP
Sbjct: 122 YVKESVLSPYSRIFPP 137

[Close]

BLAST of Tan0005020 vs. ExPASy TrEMBL
Match: A0A6J1HZ66 (SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 118/136 (86.76%), Postives = 131/136 (96.32%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVN +FIV+EKG TT++GQNK CQ+LV D+TAAVHFQLWG+ECDVVE
Sbjct: 2   MISLKDLVPAAQNNVNTQFIVLEKGMTTMDGQNKTCQSLVADETAAVHFQLWGEECDVVE 61

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDI+RL NGIFSY+RNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDT++SKK
Sbjct: 62  PSDILRLMNGIFSYSRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTSNSKK 121

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESV+SPYSRIFPP
Sbjct: 122 YVKESVVSPYSRIFPP 137

[Close]

BLAST of Tan0005020 vs. ExPASy TrEMBL
Match: A0A6J1D803 (SOSS complex subunit B homolog OS=Momordica charantia OX=3673 GN=LOC111018468 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.0e-63
Identity = 123/138 (89.13%), Postives = 131/138 (94.93%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MISLK+LVPAAQNNVNA+FIV++KGKTT EGQNKAC +LV D+TAAVHFQLWGDECD VE
Sbjct: 1   MISLKDLVPAAQNNVNAQFIVLDKGKTTAEGQNKACLSLVADETAAVHFQLWGDECDAVE 60

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDIIRLTNGIFSY+R NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEI WVPDT DSKK
Sbjct: 61  PSDIIRLTNGIFSYSR-NNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIRWVPDTIDSKK 120

Query: 121 YVKESVLSPYSRIFPPNH 139
           YVKESVLSPYSRIFPPN+
Sbjct: 121 YVKESVLSPYSRIFPPNN 137

[Close]

BLAST of Tan0005020 vs. ExPASy TrEMBL
Match: A0A1S3BPN4 (SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MI LK+LVPAAQN VN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWGDECDVVE
Sbjct: 3   MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVE 62

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT +S K
Sbjct: 63  PSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNK 122

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESVLSPYSRIFPP
Sbjct: 123 YVKESVLSPYSRIFPP 138

[Close]

BLAST of Tan0005020 vs. ExPASy TrEMBL
Match: A0A5D3CIR3 (SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G004040 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.9e-63
Identity = 119/136 (87.50%), Postives = 127/136 (93.38%), Query Frame = 0


Query: 1   MISLKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVE 60
           MI LK+LVPAAQN VN +FIV+EKG TT+EGQNK CQ+LV D+TAAVHFQLWGDECDVVE
Sbjct: 3   MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKVCQSLVADETAAVHFQLWGDECDVVE 62

Query: 61  PSDIIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKK 120
           PSDIIRLTNGIFSY+RNNNLVLRAGKRGKIEKVGEF MVFVETPNMSEIHWVPDT +S K
Sbjct: 63  PSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEIHWVPDTINSNK 122

Query: 121 YVKESVLSPYSRIFPP 137
           YVKESVLSPYSRIFPP
Sbjct: 123 YVKESVLSPYSRIFPP 138

[Close]

BLAST of Tan0005020 vs. TAIR 10
Match: AT5G63690.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 181.8 bits (460), Expect = 3.7e-46
Identity = 79/133 (59.40%), Postives = 103/133 (77.44%), Query Frame = 0


Query: 4   LKELVPAAQNNVNAEFIVVEKGKTTIEGQNKACQTLVGDKTAAVHFQLWGDECDVVEPSD 63
           LK++VPAAQNN++  FI+++K K++       C  L  D+TAAVH QLWGDECD  E  D
Sbjct: 5   LKDIVPAAQNNIDTRFIILDKAKSSAANGKNYCIALAADETAAVHIQLWGDECDAFEAGD 64

Query: 64  IIRLTNGIFSYTRNNNLVLRAGKRGKIEKVGEFNMVFVETPNMSEIHWVPDTTDSKKYVK 123
           I++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + FVETPN+SEI W+PD  + K+Y++
Sbjct: 65  IVKLTNGIFSYVRNSGLILRAGKRGKMEKMGEFTVAFVETPNISEIQWIPDPENPKRYIQ 124

Query: 124 ESVLSPYSRIFPP 137
             V+S YSRIFPP
Sbjct: 125 SGVVSAYSRIFPP 137

The following BLAST results are available for this feature:

BLAST of Tan0005020 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54X41	1.3e-14	35.77	SOSS complex subunit B homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0279...	[more]
Q9VM17	4.8e-14	39.81	SOSS complex subunit B homolog OS=Drosophila melanogaster OX=7227 GN=CG5181 PE=2...	[more]
A6QLK2	1.2e-12	38.68	SOSS complex subunit B1 OS=Bos taurus OX=9913 GN=NABP2 PE=2 SV=1	[more]
Q9BQ15	1.2e-12	38.68	SOSS complex subunit B1 OS=Homo sapiens OX=9606 GN=NABP2 PE=1 SV=1	[more]
Q8R2Y9	1.2e-12	38.68	SOSS complex subunit B1 OS=Mus musculus OX=10090 GN=Nabp2 PE=1 SV=1	[more]

BLAST of Tan0005020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023515959.1	7.5e-65	88.97	SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]	[more]
XP_022961520.1	2.2e-64	88.97	SOSS complex subunit B homolog [Cucurbita moschata] >XP_022961521.1 SOSS complex...	[more]
XP_038878334.1	8.3e-64	88.97	SOSS complex subunit B homolog [Benincasa hispida] >XP_038878335.1 SOSS complex ...	[more]
XP_022968811.1	4.1e-63	86.76	SOSS complex subunit B homolog [Cucurbita maxima] >XP_022968812.1 SOSS complex s...	[more]
XP_022150258.1	4.1e-63	89.13	SOSS complex subunit B homolog [Momordica charantia] >XP_022150259.1 SOSS comple...	[more]

BLAST of Tan0005020 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HAL0	1.1e-64	88.97	SOSS complex subunit B homolog OS=Cucurbita moschata OX=3662 GN=LOC111462072 PE=...	[more]
A0A6J1HZ66	2.0e-63	86.76	SOSS complex subunit B homolog OS=Cucurbita maxima OX=3661 GN=LOC111467936 PE=4 ...	[more]
A0A6J1D803	2.0e-63	89.13	SOSS complex subunit B homolog OS=Momordica charantia OX=3673 GN=LOC111018468 PE...	[more]
A0A1S3BPN4	9.9e-63	87.50	SOSS complex subunit B homolog OS=Cucumis melo OX=3656 GN=LOC103492156 PE=4 SV=1	[more]
A0A5D3CIR3	9.9e-63	87.50	SOSS complex subunit B-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of Tan0005020 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63690.1	3.7e-46	59.40	Nucleic acid-binding, OB-fold-like protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..109 e-value: 2.8E-24 score: 87.4
None	No IPR available	PANTHER	PTHR13356:SF0	SOSS COMPLEX SUBUNIT B HOMOLOG	coord: 1..135
None	No IPR available	PANTHER	PTHR13356	OB FOLD NUCLEIC ACID BINDING PROTEIN-RELATED	coord: 1..135
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0005020.1	Tan0005020.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000724	double-strand break repair via homologous recombination
biological_process	GO:0010212	response to ionizing radiation
cellular_component	GO:0070876	SOSS complex
molecular_function	GO:0003677	DNA binding