Tan0004905 (gene) Snake gourd v1

Overview
NameTan0004905
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG07: 41998895 .. 41999761 (-)
RNA-Seq ExpressionTan0004905
SyntenyTan0004905
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAGAGAGTGAGAGAGATTTTTTTTCTTAAAAAAAAAAATTGATGAGAAAAAGCTGTATGATATTAGATATATCATATATGTTCGCCCACATCAAACAAATCTGGAAACGGCGATTGGGTTTAGAGAATTGGGATCTTCAAAACAAAACCGCATTTTGATAGCCTTTGATTTCTCCTTACAGTTGGCCTTCCTTCTAACTTCAACAAACAACTCACTCATTCCTTCATTAATTCGTAAATCTCCAATGGGTCGCTCTTCTTTTCTCTCAATTCTTCTTCTTACTCTCTTCATCGCTCTTTGTTTCACTAATGGTAAATATTTAATTTCTCTCTTCCTTCTTCTTCTTAAATCTCATTTTCTTTGCCTTTTTTTACTTTTTTAATTTAATGGGTTTTTTCTTTTTTGGTAAATCTCAAGGATTTGGAAGAAAAATTAGGATGCTGAAGGATCAACATTCACACCATGACTCCAGAATTCAGTTAAAGGTAAAGATATTATTTTTCTCTGTTTTTTTTTTTTGAGTGAAAATTAAAAATCTGTTTTTTTTTTTAAAGATTTTGCAGGAAAGTGGAGGAAAATGGAGGATGATGATGATGGAGACAATGGATTATCCAGATCCAGAACCAAACACCAACATAAAAGGTGGCTATGTTTCTCCACCTCCTCCTTATCATGGATGAATTTAATTCATTCAATTTAATATTATCAGTAAGGGCTTTGTTGAGTTTTTTTTTTTGTGGGAATGTTTTTGTTCATAGTATTTTTTTTGGGAAAGTTAGGGAAAGAAGCAGTTTCATTGATGTTAAGTTACCTAATTTATGGTTTTTTTGTAAAGAGACTTGTTTGTGGTTTGGATGTGGA

mRNA sequence

AAAAAAGAGAGAGTGAGAGAGATTTTTTTTCTTAAAAAAAAAAATTGATGAGAAAAAGCTGTATGATATTAGATATATCATATATGTTCGCCCACATCAAACAAATCTGGAAACGGCGATTGGGTTTAGAGAATTGGGATCTTCAAAACAAAACCGCATTTTGATAGCCTTTGATTTCTCCTTACAGTTGGCCTTCCTTCTAACTTCAACAAACAACTCACTCATTCCTTCATTAATTCGTAAATCTCCAATGGGTCGCTCTTCTTTTCTCTCAATTCTTCTTCTTACTCTCTTCATCGCTCTTTGTTTCACTAATGGATTTGGAAGAAAAATTAGGATGCTGAAGGATCAACATTCACACCATGACTCCAGAATTCAGTTAAAGGAAAGTGGAGGAAAATGGAGGATGATGATGATGGAGACAATGGATTATCCAGATCCAGAACCAAACACCAACATAAAAGGTGGCTATGTTTCTCCACCTCCTCCTTATCATGGATGAATTTAATTCATTCAATTTAATATTATCAGTAAGGGCTTTGTTGAGTTTTTTTTTTTGTGGGAATGTTTTTGTTCATAGTATTTTTTTTGGGAAAGTTAGGGAAAGAAGCAGTTTCATTGATGTTAAGTTACCTAATTTATGGTTTTTTTGTAAAGAGACTTGTTTGTGGTTTGGATGTGGA

Coding sequence (CDS)

ATGGGTCGCTCTTCTTTTCTCTCAATTCTTCTTCTTACTCTCTTCATCGCTCTTTGTTTCACTAATGGATTTGGAAGAAAAATTAGGATGCTGAAGGATCAACATTCACACCATGACTCCAGAATTCAGTTAAAGGAAAGTGGAGGAAAATGGAGGATGATGATGATGGAGACAATGGATTATCCAGATCCAGAACCAAACACCAACATAAAAGGTGGCTATGTTTCTCCACCTCCTCCTTATCATGGATGA

Protein sequence

MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHDSRIQLKESGGKWRMMMMETMDYPDPEPNTNIKGGYVSPPPPYHG
Homology
BLAST of Tan0004905 vs. NCBI nr
Match: XP_011652234.1 (uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical protein Csa_002017 [Cucumis sativus])

HSP 1 Score: 121.3 bits (303), Expect = 3.9e-24
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLF-IALCFTNGFGRKIRMLKDQ-HSHHDSRIQLKESGGKWRMMMMET 60
          MGRSSFLSILLL  F I LCF+NGFGR +RM+ +   SHH+SR+ L+ESG KWRMM MET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYPDPEPNTNIKGGYVSPPPP 81
          MDY DPEPNTN+KGGYVSPPPP
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPP 82

BLAST of Tan0004905 vs. NCBI nr
Match: KAG6588364.1 (hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022213.1 hypothetical protein SDJN02_15943 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHDSRIQLKESGGKW--RMMMMET 60
          MGRS FLSILLL+L IA CFTNGFG K+RM++   +HH S ++LKESG +   RMMMMET
Sbjct: 1  MGRSPFLSILLLSLLIAPCFTNGFGGKMRMMEGVDTHHGSSVELKESGEEMRRRMMMMET 60

Query: 61 MDYPDPEPNTNIK-GGYVSPPPPYHG 84
          MDY DPEPNTN+K GGYVSPPPP  G
Sbjct: 61 MDYSDPEPNTNVKGGGYVSPPPPLRG 86

BLAST of Tan0004905 vs. NCBI nr
Match: XP_041004488.1 (uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 76.6 bits (187), Expect = 1.1e-10
Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHDSRIQLKESGGKWRMMMMETMD 60
          MGRS FL+ILL++  + LCF++GFGRK+    +   H DS  +++ES      MM+E MD
Sbjct: 1  MGRSCFLNILLVSSLLVLCFSHGFGRKV---METVEHEDSTFRVEESTVGKSRMMIEVMD 60

Query: 61 YPDPEPNTNIKGGYVSPPPP 81
          Y DP PNTN + GY+  PPP
Sbjct: 61 YSDPGPNTNPRSGYIFSPPP 77

BLAST of Tan0004905 vs. NCBI nr
Match: KAG6659311.1 (hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719710.1 hypothetical protein I3842_03G020400 [Carya illinoinensis])

HSP 1 Score: 75.9 bits (185), Expect = 1.9e-10
Identity = 40/80 (50.00%), Postives = 51/80 (63.75%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHDSRIQLKESGGKWRMMMMETMD 60
          MGRS FLSILL +  + LCF++GFGRK+    +   H DS  +++ES       M+E MD
Sbjct: 1  MGRSCFLSILLASSLLVLCFSHGFGRKV---METVEHEDSTFRVEESTVGKSRRMIEVMD 60

Query: 61 YPDPEPNTNIKGGYVSPPPP 81
          Y DP PNTN K GY+  PPP
Sbjct: 61 YSDPGPNTNPKSGYIFSPPP 77

BLAST of Tan0004905 vs. NCBI nr
Match: PON65370.1 (hypothetical protein PanWU01x14_116840 [Parasponia andersonii])

HSP 1 Score: 73.9 bits (180), Expect = 7.1e-10
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRK-IRMLKDQHSHHDSRIQLKESGGKWRMMMMETM 60
          MGR  F +ILL++LF+ L F++GFGR+ ++ ++     H S +++KE+GG     M+E  
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYPDPEPNTNIKGGYVSPPPP 81
          DY +PEPNTN + GY+  PPP
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPP 81

BLAST of Tan0004905 vs. ExPASy TrEMBL
Match: A0A0A0LCS0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.9e-24
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLF-IALCFTNGFGRKIRMLKDQ-HSHHDSRIQLKESGGKWRMMMMET 60
          MGRSSFLSILLL  F I LCF+NGFGR +RM+ +   SHH+SR+ L+ESG KWRMM MET
Sbjct: 1  MGRSSFLSILLLLSFLITLCFSNGFGRNLRMVVEPLDSHHNSRVLLEESGRKWRMMKMET 60

Query: 61 MDYPDPEPNTNIKGGYVSPPPP 81
          MDY DPEPNTN+KGGYVSPPPP
Sbjct: 61 MDYADPEPNTNVKGGYVSPPPP 82

BLAST of Tan0004905 vs. ExPASy TrEMBL
Match: A0A2P5CWE3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.4e-10
Identity = 36/81 (44.44%), Postives = 55/81 (67.90%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRK-IRMLKDQHSHHDSRIQLKESGGKWRMMMMETM 60
          MGR  F +ILL++LF+ L F++GFGR+ ++ ++     H S +++KE+GG     M+E  
Sbjct: 1  MGRRCFPTILLVSLFMLLFFSHGFGRRSLKTVEGHQEEHYSSVEVKENGGVKSREMIEVT 60

Query: 61 DYPDPEPNTNIKGGYVSPPPP 81
          DY +PEPNTN + GY+  PPP
Sbjct: 61 DYSEPEPNTNPRAGYIFTPPP 81

BLAST of Tan0004905 vs. ExPASy TrEMBL
Match: A0A2P5FF06 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_079660 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHD---SRIQLKESGGKWRMMMME 60
          MGR  F +ILL++ F+ L F++GFGR  R LK    H +   S +++KE+GG     M+E
Sbjct: 1  MGRRCFPTILLVSFFVLLFFSHGFGR--RSLKTVEGHQEESYSSVEVKENGGVKSREMIE 60

Query: 61 TMDYPDPEPNTNIKGGYVSPPPPYHG 84
            DY +PEPNTN + GY+  PPP  G
Sbjct: 61 VTDYSEPEPNTNPRAGYIFTPPPSSG 84

BLAST of Tan0004905 vs. ExPASy TrEMBL
Match: A0A200QHE3 (Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1753g22 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.3e-09
Identity = 40/80 (50.00%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHDSRIQLKESGGKWRMMMMETMD 60
          MGRS FL  LL +  +ALC + GFGRK+  L+++    DS + L+E+ GK R  M+E MD
Sbjct: 1  MGRSYFLRFLLFSAVLALCLSQGFGRKLMELENE----DSAVLLEENTGKAR-KMIEVMD 60

Query: 61 YPDPEPNTNIKGGYVSPPPP 81
          Y DPE NTN + GY+  PPP
Sbjct: 61 YTDPEANTNPRTGYLFTPPP 75

BLAST of Tan0004905 vs. ExPASy TrEMBL
Match: A0A5N6QY91 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007572 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.7e-09
Identity = 39/79 (49.37%), Postives = 51/79 (64.56%), Query Frame = 0

Query: 1  MGRSSFLSILLLTLFIALCFTNGFGRKIRMLKDQHSHHDSRIQLKESGGKWRMMMMETMD 60
          MGR  FL ILLL+  + LCF++GFG K+    +   H DS +Q++E+ G+ R  M E MD
Sbjct: 1  MGRFCFLRILLLSSLLVLCFSHGFGSKV---METVQHEDSGVQVEETVGESR-EMTEVMD 60

Query: 61 YPDPEPNTNIKGGYVSPPP 80
          Y DP PNTN K GY+  PP
Sbjct: 61 YQDPGPNTNPKNGYIFSPP 75

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_011652234.13.9e-2474.39uncharacterized protein LOC105435001 [Cucumis sativus] >KGN59558.1 hypothetical ... [more]
KAG6588364.11.6e-2269.77hypothetical protein SDJN03_16929, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_041004488.11.1e-1048.75uncharacterized protein LOC121249761 isoform X2 [Juglans microcarpa x Juglans re... [more]
KAG6659311.11.9e-1050.00hypothetical protein CIPAW_03G025300 [Carya illinoinensis] >KAG6719710.1 hypothe... [more]
PON65370.17.1e-1044.44hypothetical protein PanWU01x14_116840 [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
A0A0A0LCS01.9e-2474.39Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G825030 PE=4 SV=1[more]
A0A2P5CWE33.4e-1044.44Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_116840 PE... [more]
A0A2P5FF061.3e-0945.35Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_079660 PE=4 SV... [more]
A0A200QHE31.3e-0950.00Uncharacterized protein OS=Macleaya cordata OX=56857 GN=BVC80_1753g22 PE=4 SV=1[more]
A0A5N6QY911.7e-0949.37Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007572 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..83
NoneNo IPR availablePANTHERPTHR37908TRANSMEMBRANE PROTEINcoord: 1..80
NoneNo IPR availablePANTHERPTHR37908:SF4PROTEIN, PUTATIVE-RELATEDcoord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0004905.1Tan0004905.1mRNA