Tan0004894 (gene) Snake gourd v1

Overview


Name	Tan0004894
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA/RNA polymerases superfamily protein
Location	LG11: 39554363 .. 39556177 (-)
RNA-Seq Expression	Tan0004894
Synteny	Tan0004894

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCACGTACTAGCAGACGACGGAGGCAGGATCCGGGCGGGACGCAGGATCCTACCCAAGGGCAATCTGAGAGGGGATCTAGTGCCCCGAGAGTCCAAACTGAGGTTAGAGATCAGCAGCATGCCATTTCCTCACAGGAGGTAGGCAGGCCAGAGAGAGCAGGGCCAAGTGATCCAGAGAAGGCATATGGAATAGAACGACTGAAGAAATTGGGAGCCACAGTGTTTGAGGGTTCCACAGATCCAGCTGACGGCGAGGTTTGGCTGAATAAGCTTGAGAAATGTTTTGACGTGATGAGTTGCCCTGAGGAGCGTAAAGTCAAGTTAGCCACATTCCTGCTAGAGAAAGAAGCAGAGGGATGGTGGAAATCAATACGAGCTAGGCGTAGTGATGCACATACTCTAGACTGGCAAACTTTCAGAAGCATCTTCGAAGATAAATATTACCCTAGCACATATCGTGAGGCCAAAAGGGATGAATTTTTAGAACTGAAGCAAGGATCAATTTCAGTGGCTGAGTACGAGAGAAGGTATACTGAGTTATCACGGTATGCTGATGTTATTGTGGCATTTGAGAGTGACACGTGTCGACGATTTGAAAGAGGTTTACGACCTGAGATACGTACCCCAGTCACAGCCATTGCTAAGTGGACTGACTTCTCACAGCTGGTAGAGACTGCTCTACGTTTTGAGCAGAGTATAGCAGAGGCGCAGTCAGTAGTGGAGCCTACTAGTGGGCCTTCAACGACGAGCAGTTTTCAGGGTCGCGAACAGCGAAGATTCACACTCAGAGTGAATGTTTCAAGTCGTCAAGACTTTAAGAATCGAGCTGGCAGCCAGACATCGAGGCAGATGAATGTTAGTGGTGCCTATCAGAGGCAAAGTCAAAGAGTACCTAGTCAATCTGCCAGATCCACAGCAAGACCACTAACAATGCAGGAGTCTATAGCTAGTGTCGCAAGGAGAACTTCATGTCCAAATTGTGGTAAGATTCATCGAGGCCAATGTTTTGTTGGTGTCAATGTGTGTTACCAGTGTGGGCAGCCAGGGCATTTCAAGAGGGATTGTCCACAGTTGAGAGCAGCCAAACAGAGAGACCAGGGAGTTGGGTACCAGACAGTTGAACAACCAAGAATTCCAGTAGCTACAGGAGAGGGCACCTGTGGTGCTAGACAGAAAGGAGTTGTAGGGAGACCTAAGCAACAGGGAAAGGTCTATGCTATGACTCAGCAGGAAGCAGAATATGCACCAGACGTGATTACTGGTACGATCTCTATTTGTAATGTACCTGCACGTGTTTTAATAGATTCAGGTGCTACGCATTCCTTTGTTTCTAGTATGTTCCTATCTAAGATGAATAGAAAGCTAGAGCCTTTATTTGAGGGGTTAGTTATATACACTCCAGTTGGTGATGCTTTATTAGTCAATTCAGTGTTGCGGAATTGTGAGGTCTTAGTAGAAGGTCTCAATATGTTAGTGGATCTTCTTCAACTAGAGTTGCAGGTGTTAGATGCAATCTTAGGGATGGATTTTTTATTCACTCATTATGCTTCCATGGATTGCCATAGAAAGGAAGTTGTTTTTAGAAAATCAGGGTTGGCTAAAGTGGTTTTCCGGGGTGAAAAGAAGATTATTCCTACGAGTTTGATTTCAGCATTCAAAGCTCAGAAGTTGTTGAGAAAAGGTTGCACGACATTTCTTGCACACGTAGTGGAGGTGCAGGAAGAAAAGCTAAAACCAGAAGATGTTCTTATTGTGAACGAATTTCTAGAGGTTTTTCCAAAGAGATCTGTCTGTGGTTGCCACCGATAG

mRNA sequence

ATGCCACCACGTACTAGCAGACGACGGAGGCAGGATCCGGGCGGGACGCAGGATCCTACCCAAGGGCAATCTGAGAGGGGATCTAGTGCCCCGAGAGTCCAAACTGAGGTTAGAGATCAGCAGCATGCCATTTCCTCACAGGAGGTAGGCAGGCCAGAGAGAGCAGGGCCAACTAGGCGTAGTGATGCACATACTCTAGACTGGCAAACTTTCAGAAGCATCTTCGAAGATAAATATTACCCTAGCACATATCGTGAGGCCAAAAGGGATGAATTTTTAGAACTGAAGCAAGGATCAATTTCAGTGGCTGAGTACGAGAGAAGGTATACTGAGTTATCACGGTATGCTGATGTTATTGTGGCATTTGAGAGTGACACGTGTCGACGATTTGAAAGAGGTTTACGACCTGAGATACGTACCCCAGTCACAGCCATTGCTAAGTGGACTGACTTCTCACAGCTGGTAGAGACTGCTCTACGTTTTGAGCAGATGAATGTTTCAAGTCGTCAAGACTTTAAGAATCGAGCTGGCAGCCAGACATCGAGGCAGATGAATGTTAGTGGTGCCTATCAGAGGCAAAGTCAAAGAGTACCTAGTCAATCTGCCAGATCCACAGCAAGACCACTAACAATGCAGGAGTCTATAGCTATGGATCTTCTTCAACTAGAGTTGCAGGTGTTAGATGCAATCTTAGGGATGGATTTTTTATTCACTCATTATGCTTCCATGGATTGCCATAGAAAGGAAGTTGTTTTTAGAAAATCAGGTTTGATTTCAGCATTCAAAGCTCAGAAGTTGTTGAGAAAAGGTTGCACGACATTTCTTGCACACGTAGTGGAGGTGCAGGAAGAAAAGCTAAAACCAGAAGATGTTCTTATTGTGAACGAATTTCTAGAGGTTTTTCCAAAGAGATCTGTCTGTGGTTGCCACCGATAG

Coding sequence (CDS)

ATGCCACCACGTACTAGCAGACGACGGAGGCAGGATCCGGGCGGGACGCAGGATCCTACCCAAGGGCAATCTGAGAGGGGATCTAGTGCCCCGAGAGTCCAAACTGAGGTTAGAGATCAGCAGCATGCCATTTCCTCACAGGAGGTAGGCAGGCCAGAGAGAGCAGGGCCAACTAGGCGTAGTGATGCACATACTCTAGACTGGCAAACTTTCAGAAGCATCTTCGAAGATAAATATTACCCTAGCACATATCGTGAGGCCAAAAGGGATGAATTTTTAGAACTGAAGCAAGGATCAATTTCAGTGGCTGAGTACGAGAGAAGGTATACTGAGTTATCACGGTATGCTGATGTTATTGTGGCATTTGAGAGTGACACGTGTCGACGATTTGAAAGAGGTTTACGACCTGAGATACGTACCCCAGTCACAGCCATTGCTAAGTGGACTGACTTCTCACAGCTGGTAGAGACTGCTCTACGTTTTGAGCAGATGAATGTTTCAAGTCGTCAAGACTTTAAGAATCGAGCTGGCAGCCAGACATCGAGGCAGATGAATGTTAGTGGTGCCTATCAGAGGCAAAGTCAAAGAGTACCTAGTCAATCTGCCAGATCCACAGCAAGACCACTAACAATGCAGGAGTCTATAGCTATGGATCTTCTTCAACTAGAGTTGCAGGTGTTAGATGCAATCTTAGGGATGGATTTTTTATTCACTCATTATGCTTCCATGGATTGCCATAGAAAGGAAGTTGTTTTTAGAAAATCAGGTTTGATTTCAGCATTCAAAGCTCAGAAGTTGTTGAGAAAAGGTTGCACGACATTTCTTGCACACGTAGTGGAGGTGCAGGAAGAAAAGCTAAAACCAGAAGATGTTCTTATTGTGAACGAATTTCTAGAGGTTTTTCCAAAGAGATCTGTCTGTGGTTGCCACCGATAG

Protein sequence

MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPTRRSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYTELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQMNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVPSQSARSTARPLTMQESIAMDLLQLELQVLDAILGMDFLFTHYASMDCHRKEVVFRKSGLISAFKAQKLLRKGCTTFLAHVVEVQEEKLKPEDVLIVNEFLEVFPKRSVCGCHR

Homology

[Close]

BLAST of Tan0004894 vs. NCBI nr
Match: KAA0056288.1 (uncharacterized protein E6C27_scaffold226G00600 [Cucumis melo var. makuwa] >TYK05213.1 uncharacterized protein E5676_scaffold108G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 312.4 bits (799), Expect = 4.4e-81
Identity = 216/494 (43.72%), Postives = 244/494 (49.39%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRP-------- 60
           MPPRT RRRRQ+  G Q PTQG S   S+  RV+  V ++Q A +++E+GRP        
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGPSVGESNTLRVRGGVGNEQFARTAEEIGRPIEQSLCFD 60

Query: 61  -------------------ERAG-----PTRRSDAHTLDWQTFRSIFEDKYYPSTYREAK 120
                              E  G       RRSDA  L+WQTFR IFEDKYYP+TY EAK
Sbjct: 61  VMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARALNWQTFRGIFEDKYYPNTYCEAK 120

Query: 121 RDEFLELKQGSISVAEYERRYTELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKW 180
           RDEFL LKQGS+SVAEYER+YTELSRYADVIVA ESD CRRFERGLR EIRTPVTAIAKW
Sbjct: 121 RDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKW 180

Query: 181 TDFSQLVETALRFEQ--------------------------------MNVSSRQDFKNRA 240
           T+FSQLVETAL  EQ                                +N+SSRQDFKNR+
Sbjct: 181 TNFSQLVETALHVEQSITEEKSAVEFSRGTSTASGFRGREQRRFTPGINISSRQDFKNRS 240

Query: 241 GSQTSRQMNVSGAYQRQSQRVPSQSARSTARPLTMQESIA-------------------- 300
             Q SR ++    +Q+QSQR+P+Q  RST R    QES+A                    
Sbjct: 241 RGQASRNVSYGSVFQKQSQRIPTQPTRSTVRSQPGQESVASTVRRTSCTSCGKNHRDQGV 300

Query: 301 ------------------------------------------------------------ 303
                                                                       
Sbjct: 301 RSQTVEQSRVSVVPTEGTSGARKKGVVGRLRQQGKVYAMTQQEAEDAPDVITGTILICNV 360

[Close]

BLAST of Tan0004894 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 310.5 bits (794), Expect = 1.7e-80
Identity = 217/507 (42.80%), Postives = 244/507 (48.13%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPTR- 60
           MPPRTSRRRRQ+    QDPTQGQSERGSS PR Q E   ++   S+QE+GR ERA P+  
Sbjct: 151 MPPRTSRRRRQNQDRMQDPTQGQSERGSSTPRGQNEAGSERFVRSAQEIGRSERARPSDP 210

Query: 61  -----------------------------RSDAHTLDWQTFRSIFEDKYYPSTYREAKRD 120
                                         +DA TLDWQTFR IFE+KYYP+T  EAKRD
Sbjct: 211 EKMYGIERLKELGATVFVGSTDLADAEVWHNDARTLDWQTFRGIFEEKYYPTTCCEAKRD 270

Query: 121 EFLELKQGSISVAEYERRYTELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTD 180
           EFLELKQGS+SVA+Y+R+YTELS YA+VI+A ESD CRRFERGL  EIRTPVTAIAKWTD
Sbjct: 271 EFLELKQGSLSVAKYKRKYTELSWYAEVIMASESDRCRRFERGLHFEIRTPVTAIAKWTD 330

Query: 181 FSQLVETALRFEQ--------------------------------MNVSSRQDFKNRAGS 240
           FSQL+ETALR EQ                                +N+S  QDFK R G 
Sbjct: 331 FSQLIETALRVEQSIVEEKSAMELSRGVSTTSRIRGREQRRSTPGVNISGCQDFKRRLGG 390

Query: 241 QTSRQMNVSGAYQRQSQRVPSQSARSTARPLTMQESIA---------------------- 300
           +  RQM+   AYQRQSQR  SQ   S ARP T QES+A                      
Sbjct: 391 KPLRQMSSGSAYQRQSQRASSQFTNSVARPRTGQESVASESRRTPCVSCSKSHRGQCLVG 450

Query: 301 ------------------------------------------------------------ 303
                                                                       
Sbjct: 451 AGVCYQCGQTGHFKRDCPQLRVGVQRDQGVESHTVEQPRILAAAREGTSGARQKRVVGRP 510

[Close]

BLAST of Tan0004894 vs. NCBI nr
Match: KAA0035138.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 1.1e-79
Identity = 221/530 (41.70%), Postives = 245/530 (46.23%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGP--- 60
           M PRT RRRRQ+  G Q PTQG S   SS   V+    ++Q   ++QE+GRP+RA P   
Sbjct: 39  MSPRTGRRRRQNQDGMQGPTQGPSLGESSTLGVRGGAGNEQFTRTTQEIGRPDRAEPSNP 98

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 99  KKAYGIERLKKLGATVFEGSTDPVDAENWLNMLEKCFDVMNCPEEQKVRLATFLLQKEAE 158

Query: 121 -------TRRSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYT 180
                  TRRSDA  LDWQTFR IFEDKYYPSTY EAKRDEFL LKQGS+SVAEYE++YT
Sbjct: 159 GWWKSILTRRSDARALDWQTFRVIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYEKKYT 218

Query: 181 ELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQ------- 240
           ELSRYADVIVA ESD CRRFERGLR EIRTPVTAIAKWT+FSQLVETALR EQ       
Sbjct: 219 ELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 -------------------------MNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVP 300
                                    +N+SSRQDFKNR+G Q SR ++    +QRQSQR+P
Sbjct: 279 AVELSRGTSTTNGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSARSTARPLTMQESIA------------------------------------------ 302
           SQ  RST R    QESIA                                          
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRTPCTSCGKNHRVQRDQGVRSQTVEKSRVSVVPIEGTS 398

[Close]

BLAST of Tan0004894 vs. NCBI nr
Match: KAA0051348.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 300.1 bits (767), Expect = 2.3e-77
Identity = 219/543 (40.33%), Postives = 243/543 (44.75%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPT-- 60
           MPPRT RRRRQ+  G Q PTQG S   SS   V+    ++Q A ++QE+GRP+RA P+  
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGSSVWESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPADVENWLNMFENCFDVMNCPEERKVRMATFLLKKEAE 120

Query: 121 --------RRSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYT 180
                   RRSDAH LDWQTFR IFEDKYYPSTY EAKRDEFL LKQGS+SVAEYER+YT
Sbjct: 121 GWWKSILARRSDAHALDWQTFRGIFEDKYYPSTYYEAKRDEFLGLKQGSLSVAEYERKYT 180

Query: 181 ELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQ------- 240
           ELSRYADVIVA ESD CRRFERGLR EIRTPVTAIAKWT+FSQLVETALR EQ       
Sbjct: 181 ELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240

Query: 241 -------------------------MNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVP 300
                                    +N+SS  DFKNR+G Q SR ++    +QRQSQR+ 
Sbjct: 241 VVELSRGTSTTSGFIGREQRRFTPKINISSLHDFKNRSGGQASRNVSYDSVFQRQSQRIL 300

Query: 301 SQSARSTARPLTMQESIA------------------------------------------ 302
           SQ  RST R    QESI                                           
Sbjct: 301 SQPIRSTVRSQPGQESITRTVRRTPCTSYGRNHRGMCLVGASVCYQCGQPEHFKKDCPQL 360

[Close]

BLAST of Tan0004894 vs. NCBI nr
Match: TYK08952.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 296.6 bits (758), Expect = 2.5e-76
Identity = 208/494 (42.11%), Postives = 237/494 (47.98%), Query Frame = 0


Query: 11  QDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPTR----------- 70
           Q+  GTQDPTQGQSERGSS PR Q EV +++ A SSQE+GRPERA P+            
Sbjct: 67  QNQDGTQDPTQGQSERGSSTPRGQNEVGNERFARSSQEIGRPERARPSNPEKMCGIERLK 126

Query: 71  -------RSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYTEL 130
                         D + FR IFE+KYYP+TY EAKRDEFLELKQGS+ V EYE +YTEL
Sbjct: 127 KLGATVFEGSTDPADVEMFRGIFEEKYYPTTYCEAKRDEFLELKQGSLLVVEYEMKYTEL 186

Query: 131 SRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQ--------- 190
           SRYA++IVA ESD CRRFERGLR E+RTPVTAIAKWT+FSQLVETALR EQ         
Sbjct: 187 SRYAEMIVASESDRCRRFERGLRFELRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAM 246

Query: 191 -----------------------MNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVPSQ 250
                                  +NVS  QDFK R+G +  RQM+   AYQRQSQR  SQ
Sbjct: 247 ELSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGTAYQRQSQRASSQ 306

Query: 251 SARSTAR----------------------------------------------------- 302
           SA S AR                                                     
Sbjct: 307 SANSVARSRTRHFKRDCPQLRVAVRRDQGVESHTVEQPRISIAAGEGTSGARQKEVVGRP 366

[Close]

BLAST of Tan0004894 vs. ExPASy TrEMBL
Match: A0A5D3BZQ5 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00180 PE=4 SV=1)

HSP 1 Score: 312.4 bits (799), Expect = 2.2e-81
Identity = 216/494 (43.72%), Postives = 244/494 (49.39%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRP-------- 60
           MPPRT RRRRQ+  G Q PTQG S   S+  RV+  V ++Q A +++E+GRP        
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGPSVGESNTLRVRGGVGNEQFARTAEEIGRPIEQSLCFD 60

Query: 61  -------------------ERAG-----PTRRSDAHTLDWQTFRSIFEDKYYPSTYREAK 120
                              E  G       RRSDA  L+WQTFR IFEDKYYP+TY EAK
Sbjct: 61  VMNCPEERKVRLATFLLQKEAEGWWKSILARRSDARALNWQTFRGIFEDKYYPNTYCEAK 120

Query: 121 RDEFLELKQGSISVAEYERRYTELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKW 180
           RDEFL LKQGS+SVAEYER+YTELSRYADVIVA ESD CRRFERGLR EIRTPVTAIAKW
Sbjct: 121 RDEFLGLKQGSLSVAEYERKYTELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKW 180

Query: 181 TDFSQLVETALRFEQ--------------------------------MNVSSRQDFKNRA 240
           T+FSQLVETAL  EQ                                +N+SSRQDFKNR+
Sbjct: 181 TNFSQLVETALHVEQSITEEKSAVEFSRGTSTASGFRGREQRRFTPGINISSRQDFKNRS 240

Query: 241 GSQTSRQMNVSGAYQRQSQRVPSQSARSTARPLTMQESIA-------------------- 300
             Q SR ++    +Q+QSQR+P+Q  RST R    QES+A                    
Sbjct: 241 RGQASRNVSYGSVFQKQSQRIPTQPTRSTVRSQPGQESVASTVRRTSCTSCGKNHRDQGV 300

Query: 301 ------------------------------------------------------------ 303
                                                                       
Sbjct: 301 RSQTVEQSRVSVVPTEGTSGARKKGVVGRLRQQGKVYAMTQQEAEDAPDVITGTILICNV 360

[Close]

BLAST of Tan0004894 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 8.2e-81
Identity = 217/507 (42.80%), Postives = 244/507 (48.13%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPTR- 60
           MPPRTSRRRRQ+    QDPTQGQSERGSS PR Q E   ++   S+QE+GR ERA P+  
Sbjct: 151 MPPRTSRRRRQNQDRMQDPTQGQSERGSSTPRGQNEAGSERFVRSAQEIGRSERARPSDP 210

Query: 61  -----------------------------RSDAHTLDWQTFRSIFEDKYYPSTYREAKRD 120
                                         +DA TLDWQTFR IFE+KYYP+T  EAKRD
Sbjct: 211 EKMYGIERLKELGATVFVGSTDLADAEVWHNDARTLDWQTFRGIFEEKYYPTTCCEAKRD 270

Query: 121 EFLELKQGSISVAEYERRYTELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTD 180
           EFLELKQGS+SVA+Y+R+YTELS YA+VI+A ESD CRRFERGL  EIRTPVTAIAKWTD
Sbjct: 271 EFLELKQGSLSVAKYKRKYTELSWYAEVIMASESDRCRRFERGLHFEIRTPVTAIAKWTD 330

Query: 181 FSQLVETALRFEQ--------------------------------MNVSSRQDFKNRAGS 240
           FSQL+ETALR EQ                                +N+S  QDFK R G 
Sbjct: 331 FSQLIETALRVEQSIVEEKSAMELSRGVSTTSRIRGREQRRSTPGVNISGCQDFKRRLGG 390

Query: 241 QTSRQMNVSGAYQRQSQRVPSQSARSTARPLTMQESIA---------------------- 300
           +  RQM+   AYQRQSQR  SQ   S ARP T QES+A                      
Sbjct: 391 KPLRQMSSGSAYQRQSQRASSQFTNSVARPRTGQESVASESRRTPCVSCSKSHRGQCLVG 450

Query: 301 ------------------------------------------------------------ 303
                                                                       
Sbjct: 451 AGVCYQCGQTGHFKRDCPQLRVGVQRDQGVESHTVEQPRILAAAREGTSGARQKRVVGRP 510

[Close]

BLAST of Tan0004894 vs. ExPASy TrEMBL
Match: A0A5A7SX06 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002230 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 5.3e-80
Identity = 221/530 (41.70%), Postives = 245/530 (46.23%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGP--- 60
           M PRT RRRRQ+  G Q PTQG S   SS   V+    ++Q   ++QE+GRP+RA P   
Sbjct: 39  MSPRTGRRRRQNQDGMQGPTQGPSLGESSTLGVRGGAGNEQFTRTTQEIGRPDRAEPSNP 98

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 99  KKAYGIERLKKLGATVFEGSTDPVDAENWLNMLEKCFDVMNCPEEQKVRLATFLLQKEAE 158

Query: 121 -------TRRSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYT 180
                  TRRSDA  LDWQTFR IFEDKYYPSTY EAKRDEFL LKQGS+SVAEYE++YT
Sbjct: 159 GWWKSILTRRSDARALDWQTFRVIFEDKYYPSTYCEAKRDEFLGLKQGSLSVAEYEKKYT 218

Query: 181 ELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQ------- 240
           ELSRYADVIVA ESD CRRFERGLR EIRTPVTAIAKWT+FSQLVETALR EQ       
Sbjct: 219 ELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 278

Query: 241 -------------------------MNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVP 300
                                    +N+SSRQDFKNR+G Q SR ++    +QRQSQR+P
Sbjct: 279 AVELSRGTSTTNGFRGREQRRFTPGINISSRQDFKNRSGGQASRNVSYGSVFQRQSQRIP 338

Query: 301 SQSARSTARPLTMQESIA------------------------------------------ 302
           SQ  RST R    QESIA                                          
Sbjct: 339 SQPIRSTVRSQPGQESIASTVRRTPCTSCGKNHRVQRDQGVRSQTVEKSRVSVVPIEGTS 398

[Close]

BLAST of Tan0004894 vs. ExPASy TrEMBL
Match: A0A5A7U7T7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00710 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.1e-77
Identity = 219/543 (40.33%), Postives = 243/543 (44.75%), Query Frame = 0


Query: 1   MPPRTSRRRRQDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPT-- 60
           MPPRT RRRRQ+  G Q PTQG S   SS   V+    ++Q A ++QE+GRP+RA P+  
Sbjct: 1   MPPRTGRRRRQNQDGMQGPTQGSSVWESSTLGVRGGAGNEQFARTTQEIGRPDRAEPSDP 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  EKAYGIERLKKLGATVFEGSTDPADVENWLNMFENCFDVMNCPEERKVRMATFLLKKEAE 120

Query: 121 --------RRSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYT 180
                   RRSDAH LDWQTFR IFEDKYYPSTY EAKRDEFL LKQGS+SVAEYER+YT
Sbjct: 121 GWWKSILARRSDAHALDWQTFRGIFEDKYYPSTYYEAKRDEFLGLKQGSLSVAEYERKYT 180

Query: 181 ELSRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQ------- 240
           ELSRYADVIVA ESD CRRFERGLR EIRTPVTAIAKWT+FSQLVETALR EQ       
Sbjct: 181 ELSRYADVIVASESDRCRRFERGLRFEIRTPVTAIAKWTNFSQLVETALRVEQSITEEKS 240

Query: 241 -------------------------MNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVP 300
                                    +N+SS  DFKNR+G Q SR ++    +QRQSQR+ 
Sbjct: 241 VVELSRGTSTTSGFIGREQRRFTPKINISSLHDFKNRSGGQASRNVSYDSVFQRQSQRIL 300

Query: 301 SQSARSTARPLTMQESIA------------------------------------------ 302
           SQ  RST R    QESI                                           
Sbjct: 301 SQPIRSTVRSQPGQESITRTVRRTPCTSYGRNHRGMCLVGASVCYQCGQPEHFKKDCPQL 360

[Close]

BLAST of Tan0004894 vs. ExPASy TrEMBL
Match: A0A5A7UJV1 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00430 PE=4 SV=1)

HSP 1 Score: 296.6 bits (758), Expect = 1.2e-76
Identity = 208/494 (42.11%), Postives = 237/494 (47.98%), Query Frame = 0


Query: 11  QDPGGTQDPTQGQSERGSSAPRVQTEVRDQQHAISSQEVGRPERAGPTR----------- 70
           Q+  GTQDPTQGQSERGSS PR Q EV +++ A SSQE+GRPERA P+            
Sbjct: 67  QNQDGTQDPTQGQSERGSSTPRGQNEVGNERFARSSQEIGRPERARPSNPEKMCGIERLK 126

Query: 71  -------RSDAHTLDWQTFRSIFEDKYYPSTYREAKRDEFLELKQGSISVAEYERRYTEL 130
                         D + FR IFE+KYYP+TY EAKRDEFLELKQGS+ V EYE +YTEL
Sbjct: 127 KLGATVFEGSTDPADVEMFRGIFEEKYYPTTYCEAKRDEFLELKQGSLLVVEYEMKYTEL 186

Query: 131 SRYADVIVAFESDTCRRFERGLRPEIRTPVTAIAKWTDFSQLVETALRFEQ--------- 190
           SRYA++IVA ESD CRRFERGLR E+RTPVTAIAKWT+FSQLVETALR EQ         
Sbjct: 187 SRYAEMIVASESDRCRRFERGLRFELRTPVTAIAKWTNFSQLVETALRVEQSIVEEKSAM 246

Query: 191 -----------------------MNVSSRQDFKNRAGSQTSRQMNVSGAYQRQSQRVPSQ 250
                                  +NVS  QDFK R+G +  RQM+   AYQRQSQR  SQ
Sbjct: 247 ELSRGVSTTSGIRGREQRRFTPGVNVSGCQDFKRRSGGKPLRQMSSGTAYQRQSQRASSQ 306

Query: 251 SARSTAR----------------------------------------------------- 302
           SA S AR                                                     
Sbjct: 307 SANSVARSRTRHFKRDCPQLRVAVRRDQGVESHTVEQPRISIAAGEGTSGARQKEVVGRP 366

The following BLAST results are available for this feature:

BLAST of Tan0004894 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004894 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0056288.1	4.4e-81	43.72	uncharacterized protein E6C27_scaffold226G00600 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0051980.1	1.7e-80	42.80	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0035138.1	1.1e-79	41.70	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0051348.1	2.3e-77	40.33	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK08952.1	2.5e-76	42.11	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BZQ5	2.2e-81	43.72	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7U9X4	8.2e-81	42.80	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7SX06	5.3e-80	41.70	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7U7T7	1.1e-77	40.33	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UJV1	1.2e-76	42.11	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]

BLAST of Tan0004894 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 65..136 e-value: 4.2E-10 score: 39.8
None	No IPR available	PFAM	PF08284	RVP_2	coord: 207..254 e-value: 2.5E-7 score: 30.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..205
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..63
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 63..203
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 63..203
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 163..265 e-value: 9.2E-6 score: 27.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004894.1	Tan0004894.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity