Tan0004776 (gene) Snake gourd v1

Overview


Name	Tan0004776
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG04: 66387205 .. 66387426 (+)
RNA-Seq Expression	Tan0004776
Synteny	Tan0004776

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCCTTGCAGGAAATGTTTGGACAACAGTCCTTTCAGGTCCGGCATGACTCGCTCAAATACGTTTTCAACGCACGGATGAAAGAGGGGTCGTCTGTCCGTGAACACGTTCTAGACATGATGACCCATTTTAATCTGGCCGAGATGAACGGGGTTTCGATCGATGAGTCGAGTCAGGTCAGTTTTATTTTGGAGACTCTTCCGAAGAGCTTCCTTTAG

mRNA sequence

ATGGAGTCCTTGCAGGAAATGTTTGGACAACAGTCCTTTCAGGTCCGGCATGACTCGCTCAAATACGTTTTCAACGCACGGATGAAAGAGGGGTCGTCTGTCCGTGAACACGTTCTAGACATGATGACCCATTTTAATCTGGCCGAGATGAACGGGGTTTCGATCGATGAGTCGAGTCAGGTCAGTTTTATTTTGGAGACTCTTCCGAAGAGCTTCCTTTAG

Coding sequence (CDS)

ATGGAGTCCTTGCAGGAAATGTTTGGACAACAGTCCTTTCAGGTCCGGCATGACTCGCTCAAATACGTTTTCAACGCACGGATGAAAGAGGGGTCGTCTGTCCGTGAACACGTTCTAGACATGATGACCCATTTTAATCTGGCCGAGATGAACGGGGTTTCGATCGATGAGTCGAGTCAGGTCAGTTTTATTTTGGAGACTCTTCCGAAGAGCTTCCTTTAG

Protein sequence

MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQVSFILETLPKSFL

Homology

[Close]

BLAST of Tan0004776 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 94  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 153

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 154 VSFILESLPESFL 166

[Close]

BLAST of Tan0004776 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 212 MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 271

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 272 VSFILESLPESFL 284

[Close]

BLAST of Tan0004776 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

[Close]

BLAST of Tan0004776 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.2e-24
Identity = 55/73 (75.34%), Postives = 68/73 (93.15%), Query Frame = 0


Query: 1   MESLQEMFGQQSFQVRHDSLKYVFNARMKEGSSVREHVLDMMTHFNLAEMNGVSIDESSQ 60
           M+SLQEMFGQ S+Q++HD+LKY++NARM EG+SVREHVL+MM HFN+AEMNG  IDE+SQ
Sbjct: 95  MDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFNVAEMNGAVIDEASQ 154

Query: 61  VSFILETLPKSFL 74
           VSFILE+LP+SFL
Sbjct: 155 VSFILESLPESFL 167

The following BLAST results are available for this feature:

BLAST of Tan0004776 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004776 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	1.7e-23	75.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	1.7e-23	75.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	1.7e-23	75.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	1.7e-23	75.34	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	1.7e-23	75.34	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	8.2e-24	75.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	8.2e-24	75.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	8.2e-24	75.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	8.2e-24	75.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	8.2e-24	75.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0004776 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..72 e-value: 2.0E-9 score: 37.3
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 1..72
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 1..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004776.1	Tan0004776.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding