Tan0004646 (gene) Snake gourd v1

Overview
NameTan0004646
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG05: 82851901 .. 82852838 (-)
RNA-Seq ExpressionTan0004646
SyntenyTan0004646
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGACTACAATGGAGTTATTAACAAAGCACTGCACTCTCCCCATCATCACCCACTCACAAAAAAAAAAGCAAAAGATCAAGGGAAGATCAGTTGATAACGCCGCCTAAGGGCATGTTTGGGAGTGATTTTGGAGTAACCAAAATCACTTTTGACATGTCTAAAATCACTTTCCTACCCAAAGTGTGATGTCTGGCAATATTAAGCAAGTGATTTTAGAAGAATTCTCCCAAAATCATTTGAAGTGATTCTCTTTCAATCACTTGGAAGGTGATTCTCAAGTGATTTTTGTCAAGTGATTGTAATTTAAAATGACTATTATTCATTTTTTTAAAATAGCATACTTTTAATGACGAGTAAAACCGTAATCTTTTATCAAAATTCATAAATTTCTATAAAAAAGTGATTTTTTTCAAAACCAAAATCACTATTAAAAATATAGAATCAAACATTAAAATGATTATTATATGAAAATCACTTTTAATAAATCAATTATAGACAAATCAATTACCCTACAATCAATATTTCTAAAATCATTTCTAGACATGCACTAAGCTGATTACTCCCCAACTTACTGGTAGTAAGAGGCTACGAACCGGCAGCTCCTCTGGTTCGAAGTCAGTGGATGGTAAGAAGGTAGGGTTTCGTGAGGTTGGTTCGAGATCGGTCCCGGTCGAATTTGACGGTTTGATGGCGAACATGGAGCAAATGGTTAAGATGCTGAAAAGGGTCAGCGGCCTGAAGGGTTTGATGAGTGATCCTGTGATGGCTTGCCTTGTTTCTGCACAGACTGTGATCGCTGCCGAAATCATCTCCGGATCAACATCACCACCAGATCACCAGAATAAAGGTTCTTCTACTAACACAGCTGCTATTGATGATGGGCCTGTACTACACAAGAAGATGAAGAAGTCAGAACCACCCGCGTTGGATTAA

mRNA sequence

ATGGGCGACTACAATGGAGTTATTAACAAAGCACTGCACTCTCCCCATCATCACCCACTCACAAAAAAAAAAGCAAAAGATCAAGGGAAGATCATGGATGGTAAGAAGGTAGGGTTTCGTGAGGTTGGTTCGAGATCGGTCCCGGTCGAATTTGACGGTTTGATGGCGAACATGGAGCAAATGGTTAAGATGCTGAAAAGGGTCAGCGGCCTGAAGGGTTTGATGAGTGATCCTGTGATGGCTTGCCTTGTTTCTGCACAGACTGTGATCGCTGCCGAAATCATCTCCGGATCAACATCACCACCAGATCACCAGAATAAAGGTTCTTCTACTAACACAGCTGCTATTGATGATGGGCCTGTACTACACAAGAAGATGAAGAAGTCAGAACCACCCGCGTTGGATTAA

Coding sequence (CDS)

ATGGGCGACTACAATGGAGTTATTAACAAAGCACTGCACTCTCCCCATCATCACCCACTCACAAAAAAAAAAGCAAAAGATCAAGGGAAGATCATGGATGGTAAGAAGGTAGGGTTTCGTGAGGTTGGTTCGAGATCGGTCCCGGTCGAATTTGACGGTTTGATGGCGAACATGGAGCAAATGGTTAAGATGCTGAAAAGGGTCAGCGGCCTGAAGGGTTTGATGAGTGATCCTGTGATGGCTTGCCTTGTTTCTGCACAGACTGTGATCGCTGCCGAAATCATCTCCGGATCAACATCACCACCAGATCACCAGAATAAAGGTTCTTCTACTAACACAGCTGCTATTGATGATGGGCCTGTACTACACAAGAAGATGAAGAAGTCAGAACCACCCGCGTTGGATTAA

Protein sequence

MGDYNGVINKALHSPHHHPLTKKKAKDQGKIMDGKKVGFREVGSRSVPVEFDGLMANMEQMVKMLKRVSGLKGLMSDPVMACLVSAQTVIAAEIISGSTSPPDHQNKGSSTNTAAIDDGPVLHKKMKKSEPPALD
Homology
[Close]
BLAST of Tan0004646 vs. NCBI nr
Match: KAG6584107.1 (hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.2 bits (160), Expect = 2.4e-07
Identity = 43/105 (40.95%), Postives = 63/105 (60.00%), Query Frame = 0 

Query: 12  LHSPHHHPLTKKKAKDQGKIMDGKKVGFREVGSRSVPVEFDGLMANMEQMVKMLKRVSGL 71
           + +P H P T+++ +D G   DG K+ + E    S  +    L+ NME++VK LKRV G 
Sbjct: 53  MSNPEHEPPTQRR-RDSG---DGNKLEYGEDADWS-SIPLARLIGNMEEVVKSLKRVGGQ 112

Query: 72  KGLMSDPVMACLVSAQT---VIAAEIISGSTSPPDHQNKGSSTNT 114
           +GLM DP++ CLVS+QT   +  A +IS +  PP  Q KG  T+T
Sbjct: 113 EGLMIDPLLGCLVSSQTSMMLCLAHLISRTPPPPGQQRKGCPTST 152

The following BLAST results are available for this feature:
BLAST of Tan0004646 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0004646 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6584107.12.4e-0740.95hypothetical protein SDJN03_20039, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Tan0004646 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Tan0004646 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..116
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 97..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..30
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..135

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0004646.1Tan0004646.1mRNA