Tan0004573 (gene) Snake gourd v1

Overview


Name	Tan0004573
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	40S ribosomal protein S28
Location	LG09: 70338436 .. 70339959 (+)
RNA-Seq Expression	Tan0004573
Synteny	Tan0004573

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTTCACGCACAATCAGAAACCCTAGTAATGCACATGCTAGGTATTTATCGCCTCCATTCGCATATTTGCATTGATCGATTCTGCAATCCGGCGGCCTGTCCACAATTCTCAAAGCTCTCTGATTTCACATCCTCTTTCGTTTAAGGTAACTACGAATTCCTTCTTCGATCCATGGTGATCTCTTTTGTTCTTTGTTATTTGTTCTGTTCAGAATCGAATAATAAAATAGAATACCGTAATACTGTTGCTATATGTTTCACATTAGGCAGACGATGGTTAGATATTAGAGTTGTTTAGCATTGCAGTTCTTATTCTTGCAGGGGATTGTTTTTGATTTGACAAACTTGACATGCTATGCTGATATATTCCTCGATGCCTTAGTTTACAATATTGAAGTAATTAGAATTGTAACTCGCATGTGCTTTCTGAAAGTTAGGCTCTTTTACATCATTAAGCTTTTTTGTTTGCTATTAGTTTACTTCTTATAACTTGCTGAGTCGTTAGGTTGTTCAAATTGGGAAGTTGGATCTTTATAATCTGGAATCTGTGGTAGATTGTGTTAGACTAGTATTGATATAATTAAATATGCCCCTACCTATTGTAATGTAATTTGTGGATTGGTTGTTGATTTAAGATCTTATCAGAGCAAGAGGTCTTGAGTTCTTCAAACTCCTGTGATGTCGTTTCTTCCAAATTTGACTTTTTTTCAAATTTCTAACTCCACAAGTGAGGGAGAGTGGTAGACTAGTATTGATACAATTAAATTTAGCTCAATCTATCAGGTTAAGCTTTTGAGTTGATTCTTGATTTGAGAGATTGTTTTGGAAATTGCTGCTGAGGAGGAGTAAATTATAAGGGAAAAGATTCTCTCTGACTGTAAGATATGTTTTTGGCATGTTTTGTAGGAATGGAATCGCAGATCAAACATGCTGTGGTGGTTAAAGTGATGGGTAGAACTGGATCAAGAGGGCAAGTGACTCAGGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACACTGTTGGAGTCCGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGATATTGTCAAGGACCCAGTTCTCCGGTTTGCAGTTGCTGAATGTTATCGTTTTATGAAATGGCTGTTGTCGTGTTTCCTAATTTAAGTATGCTTTTAGTGACTAGCGTCTCCAAGACTTTGGTTCTAAGGTAGAATGTGTGAACTGGATGAGTAATTTAGTTGAGTTTTGAAACGACCATTTTTTTCATTTCTCGAGTTTCTGTTAAATTTCGTGTATATTTACTAACTGCTTAATGTCATGGTGTTATTTTGTTCATGCATATAGGGGAATTCTTGTGTTTAGTTGTAAGTTAACTCTTAATAAGTTTGGGCAGTGATTTTGGAATAGCTAAAATTTGCCATGACAACTCACAATTGATCTTTCTAAAATTACTCTTCAGCAGTCATCTTATAAATAAATGAAGAAGTCCAA

mRNA sequence

TCTTCACGCACAATCAGAAACCCTAGTAATGCACATGCTAGGTATTTATCGCCTCCATTCGCATATTTGCATTGATCGATTCTGCAATCCGGCGGCCTGTCCACAATTCTCAAAGCTCTCTGATTTCACATCCTCTTTCGTTTAAGGAATGGAATCGCAGATCAAACATGCTGTGGTGGTTAAAGTGATGGGTAGAACTGGATCAAGAGGGCAAGTGACTCAGGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACACTGTTGGAGTCCGAGAGGGAAGCTAGAAGATTGCGTTGATGGGGATATTGTCAAGGACCCAGTTCTCCGGTTTGCAGTTGCTGAATGTTATCGTTTTATGAAATGGCTGTTGTCGTGTTTCCTAATTTAAGTATGCTTTTAGTGACTAGCGTCTCCAAGACTTTGGTTCTAAGGTAGAATGTGTGAACTGGATGAGTAATTTAGTTGAGTTTTGAAACGACCATTTTTTTCATTTCTCGAGTTTCTGTTAAATTTCGTGTATATTTACTAACTGCTTAATGTCATGGTGTTATTTTGTTCATGCATATAGGGGAATTCTTGTGTTTAGTTGTAAGTTAACTCTTAATAAGTTTGGGCAGTGATTTTGGAATAGCTAAAATTTGCCATGACAACTCACAATTGATCTTTCTAAAATTACTCTTCAGCAGTCATCTTATAAATAAATGAAGAAGTCCAA

Coding sequence (CDS)

ATGGAATCGCAGATCAAACATGCTGTGGTGGTTAAAGTGATGGGTAGAACTGGATCAAGAGGGCAAGTGACTCAGGTGAGAGTCAAGTTTCTTGACGATCAGAATCGTTACATCATGAGGAATGTCAAGGGACCAGTGAGGGAAGGAGACATTCTTACACTGTTGGAGTCCGAGAGGGAAGCTAGAAGATTGCGTTGA

Protein sequence

MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRLR

Homology

[Close]

BLAST of Tan0004573 vs. ExPASy Swiss-Prot
Match: P46302 (40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 6.4e-25
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M++Q+K AVVVKVMGRTGSRGQVTQVRVKFLDDQNR IMRNVKGPV EGDILTLLESERE
Sbjct: 1  MDTQVKLAVVVKVMGRTGSRGQVTQVRVKFLDDQNRLIMRNVKGPVCEGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. ExPASy Swiss-Prot
Match: Q9SR73 (40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.1e-24
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Tan0004573 vs. ExPASy Swiss-Prot
Match: P34789 (40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.1e-24
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Tan0004573 vs. ExPASy Swiss-Prot
Match: Q6PBK3 (40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]

BLAST of Tan0004573 vs. ExPASy Swiss-Prot
Match: Q90YP3 (40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.0e-20
Identity = 49/61 (80.33%), Postives = 55/61 (90.16%), Query Frame = 0


Query: 5  IKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESEREARRL 64
          IK A V KV+GRTGS+GQ TQVRV+F+DD NR I+RNVKGPVREGD+LTLLESEREARRL
Sbjct: 9  IKLARVTKVLGRTGSQGQCTQVRVEFMDDSNRSIIRNVKGPVREGDVLTLLESEREARRL 68

Query: 65 R 66
          R
Sbjct: 69 R 69

[Close]

BLAST of Tan0004573 vs. NCBI nr
Match: XP_022134697.1 (40S ribosomal protein S28-1-like [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 56  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 115

Query: 61  ARRLR 66
           ARRLR
Sbjct: 116 ARRLR 120

[Close]

BLAST of Tan0004573 vs. NCBI nr
Match: XP_022922061.1 (40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1   MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
           MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 45  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 104

Query: 61  ARRLR 66
           ARRLR
Sbjct: 105 ARRLR 109

[Close]

BLAST of Tan0004573 vs. NCBI nr
Match: KGN63808.2 (hypothetical protein Csa_014218 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. NCBI nr
Match: XP_008453374.1 (PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_011648782.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_011653430.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_016901435.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_016902595.1 PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_022152253.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022159219.1 40S ribosomal protein S28-1 [Momordica charantia] >XP_022924912.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022931965.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022932895.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022933469.1 40S ribosomal protein S28-1 [Cucurbita moschata] >XP_022966097.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022966510.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967935.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022967936.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_022987319.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023007264.1 40S ribosomal protein S28-1 [Cucurbita maxima] >XP_023516641.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_023529556.1 40S ribosomal protein S28-1 [Cucurbita pepo subsp. pepo] >XP_031744318.1 40S ribosomal protein S28-1 [Cucumis sativus] >XP_038881044.1 40S ribosomal protein S28-1 [Benincasa hispida] >XP_038881063.1 40S ribosomal protein S28-1 [Benincasa hispida] >XP_038898372.1 40S ribosomal protein S28-1 [Benincasa hispida] >KAA0056126.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >KAG7027624.1 40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAA0058054.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >KAA0058055.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa] >TYK02520.1 40S ribosomal protein S28-1 [Cucumis melo var. makuwa])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. NCBI nr
Match: KAG7023246.1 (40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 127.1 bits (318), Expect = 5.5e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 35 MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 94

Query: 61 ARRLR 66
          ARRLR
Sbjct: 95 ARRLR 99

[Close]

BLAST of Tan0004573 vs. ExPASy TrEMBL
Match: A0A6J1HTG7 (40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. ExPASy TrEMBL
Match: A0A0A0LPR2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. ExPASy TrEMBL
Match: A0A1S3CD61 (40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. ExPASy TrEMBL
Match: A0A6J1E1S7 (40S ribosomal protein S28-1 OS=Momordica charantia OX=3673 GN=LOC111025637 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. ExPASy TrEMBL
Match: A0A6J1EZU9 (40S ribosomal protein S28-1 OS=Cucurbita moschata OX=3662 GN=LOC111440874 PE=3 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.7e-26
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 65

[Close]

BLAST of Tan0004573 vs. TAIR 10
Match: AT3G10090.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 7.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Tan0004573 vs. TAIR 10
Match: AT5G03850.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 113.2 bits (282), Expect = 7.7e-26
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +RYIMRNVKGPVREGDILTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRYIMRNVKGPVREGDILTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

[Close]

BLAST of Tan0004573 vs. TAIR 10
Match: AT5G64140.1 (ribosomal protein S28 )

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-25
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 1  MESQIKHAVVVKVMGRTGSRGQVTQVRVKFLDDQNRYIMRNVKGPVREGDILTLLESERE 60
          M+SQIKHAVVVKVMGRTGSRGQVTQVRVKF  D +R+IMRNVKGPVREGD+LTLLESERE
Sbjct: 1  MDSQIKHAVVVKVMGRTGSRGQVTQVRVKF-TDSDRFIMRNVKGPVREGDVLTLLESERE 60

Query: 61 ARRLR 66
          ARRLR
Sbjct: 61 ARRLR 64

The following BLAST results are available for this feature:

BLAST of Tan0004573 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P46302	6.4e-25	90.77	40S ribosomal protein S28 OS=Zea mays OX=4577 GN=RPS28 PE=3 SV=1	[more]
Q9SR73	1.1e-24	92.31	40S ribosomal protein S28-1 OS=Arabidopsis thaliana OX=3702 GN=RPS28A PE=3 SV=1	[more]
P34789	4.1e-24	89.23	40S ribosomal protein S28-2 OS=Arabidopsis thaliana OX=3702 GN=RPS28C PE=3 SV=1	[more]
Q6PBK3	8.0e-20	80.33	40S ribosomal protein S28 OS=Danio rerio OX=7955 GN=rps28 PE=3 SV=1	[more]
Q90YP3	8.0e-20	80.33	40S ribosomal protein S28 OS=Ictalurus punctatus OX=7998 GN=rps28 PE=3 SV=1	[more]

BLAST of Tan0004573 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134697.1	5.5e-26	100.00	40S ribosomal protein S28-1-like [Momordica charantia]	[more]
XP_022922061.1	5.5e-26	100.00	40S ribosomal protein S28-1-like isoform X1 [Cucurbita moschata]	[more]
KGN63808.2	5.5e-26	100.00	hypothetical protein Csa_014218 [Cucumis sativus]	[more]
XP_008453374.1	5.5e-26	100.00	PREDICTED: 40S ribosomal protein S28-1 [Cucumis melo] >XP_008460765.1 PREDICTED:...	[more]
KAG7023246.1	5.5e-26	100.00	40S ribosomal protein S28, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0004573 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HTG7	2.7e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita maxima OX=3661 GN=LOC111467300 PE=3 SV=...	[more]
A0A0A0LPR2	2.7e-26	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G021920 PE=3 SV=1	[more]
A0A1S3CD61	2.7e-26	100.00	40S ribosomal protein S28-1 OS=Cucumis melo OX=3656 GN=LOC103499526 PE=3 SV=1	[more]
A0A6J1E1S7	2.7e-26	100.00	40S ribosomal protein S28-1 OS=Momordica charantia OX=3673 GN=LOC111025637 PE=3 ...	[more]
A0A6J1EZU9	2.7e-26	100.00	40S ribosomal protein S28-1 OS=Cucurbita moschata OX=3662 GN=LOC111440874 PE=3 S...	[more]

BLAST of Tan0004573 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G10090.1	7.7e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G03850.1	7.7e-26	92.31	Nucleic acid-binding, OB-fold-like protein	[more]
AT5G64140.1	2.9e-25	89.23	ribosomal protein S28	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 1..65 e-value: 8.8E-37 score: 126.8
None	No IPR available	PANTHER	PTHR10769:SF3	40S RIBOSOMAL PROTEIN S28	coord: 1..65
IPR000289	Ribosomal protein S28e	PFAM	PF01200	Ribosomal_S28e	coord: 4..64 e-value: 1.1E-32 score: 111.8
IPR000289	Ribosomal protein S28e	PANTHER	PTHR10769	40S RIBOSOMAL PROTEIN S28	coord: 1..65
IPR000289	Ribosomal protein S28e	HAMAP	MF_00292	Ribosomal_S28e	coord: 1..65 score: 21.430906
IPR000289	Ribosomal protein S28e	CDD	cd04457	S1_S28E	coord: 6..65 e-value: 3.99393E-30 score: 98.4763
IPR028626	Ribosomal protein S28e conserved site	PROSITE	PS00961	RIBOSOMAL_S28E	coord: 56..64
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 2..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004573.1	Tan0004573.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030490	maturation of SSU-rRNA
biological_process	GO:0006508	proteolysis
biological_process	GO:0000028	ribosomal small subunit assembly
biological_process	GO:0006412	translation
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016779	nucleotidyltransferase activity
molecular_function	GO:0003735	structural constituent of ribosome