Tan0004564 (gene) Snake gourd v1

Overview
NameTan0004564
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionU11/U12 small nuclear ribonucleoprotein 31 kDa protein
LocationLG11: 7448967 .. 7453346 (+)
RNA-Seq ExpressionTan0004564
SyntenyTan0004564
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAGACTCACGGTGAAGAAATGGCGCGAAGGGGGAAAAGAACCAATAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCACCTCTTCTGCCCCCCCGCCGTCGTCGTCTTCACAGTCGCATTCCTCATCGCAATTGCACTCACATTCTTCCTCCAAGTCCGGCGGTGGCTCTGGCGGTTTGGTCCCTTCGAAATCTACTCTTTACGTTTCCAATTTCGACTTCTCCCTCACCAATTCCGACCTCCATACTCTATTTTCCACCTTCGGTAAGATCGCCCGTGTTACAGTGCTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCTTTCATCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATTGCGACTGACAATGGCCGCGCCGCTGAATTCATAAGGAAGAGGGTTTACAAGGATAAGAGTAGGTGCTACGAGTGTGGCGCAGTTGACGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCGGAACCGAAGCGGGGGAGAAGAGGTGGAGCCGGTGCCAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGATTGCTGACGGGCGGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAACGAGTTATTTCAGTGACGAGAGTGATGAAGATGAGTAATTTCTAGTTTATCTCTTTGGAAAGAGTTCGCGAAGGTACATGGTTTTAACTGCTGTATTGTTATCTTCTGCCGTTTCATTACAAGGCTATATTTCTGTTTAATATTTTTTTAGAACAAGATAGAAAACTTTTCATCCAGAAACGAAAAGGAAGGGACTAATGTTCAAAAGTACAAATTACACTCTCTTGGAAAAAAAAACAATAACGATTTAGATAAATATCCTGGAATGAGAGCCACCATAAAGCAAAAAAGAACACGGAGAAGAGGCGCTTTCAAGCGACCTAATTCAAAACGATCAAATCTGAGAGGCATTATCAAATTAAATTAAGCTTGGACTTTAAATTTGGGATTCCGGGTGCGGTAAAGTAAGATTGAAATATGTTAAATCTCAAGAGACTTCTTCTCCTTAGAAAAATTTTGTTCCTTATTAAAAATAAATAAATCTCAAGATATGCTACAACAGGAATTCTCCAAATTTACTAGAGTCCAGGCTCTTGGTTGAAAACTTAGAGAAGGAAAACCTATCTATCTTCCTCTTCAGAGCTATAAAATAACTACGGGAATGGAAATGGTAAATTAATGGCTTACCTTTGTAGACTAAACTCCACAACACTTTGGTCTGTCCTGTCTTTTTTGCTTTTTTCAGACAAAGAAACAATTTTATTGGTGAATGAAATAAAGGAGAAAAAATTCCAAACACCTTATTGGTGGATTACAATAAAATTCTCCTATTGGAAATTAAAAACAAAAAGAAAAAGATAAGCTATAAAGATTAAATGGTCATATGTTTACACCATAAAAAAGCCTTTAAAAGAATCGATCAAAAAAATCTATCAAAAGTAGAAGATATGTCTATGAAATTTCAACTATTCCTATCCAGCTAAAGGTGCCAAAGAAAAGAACAAACAATCGCCAACCAAAGACTCTTCTTTGTGCATTTGAACGGATGACCCACCAATACCATGGATAGAAGAGCAAAAATATCGTTGGAAAGAGGCAATGACCAACCAAAAGCCTCTAAAATACGCATAAAAAAACGTTAAGCAAAACAACAATGCACAAAAAGATGGCTCGCAGACTCTGAATTCAATCCACATATAACACATCAAGAAAGAGAAAGAACCATAAATGACATTCTTCTTTGTAAACGATCATATGTGCTCACGGCTTCCAGACTAAGCTCGCAAAGAAAGTTACTTTTTGGATAAACATCTGACCAAACTACCAATTATAAATCCTTTAATAGAGGATTATCAACACCCAACAAACTAGTGGTAAGTGGCCTAACAGAGAATCATCTAGACGGTTCCAAAGGGCATGACCACGTATCATGAGAATTTGTTAAAGTGATCCGAGATAAAAGATTTGAAAGAGAAACTCATTCCATTATGTCCATATCATTTAAATTACGACAGACCTCAAATTCCATGCGGAACTAGAAACAATCCGAGCTTCAACTACAGTAAAATTTGGAGCCAAAATAAGCCGATATAGTCTGTCATGTCTTTTTGCGTTGCCATTTTTCTCATGAAAGTCACCTTTTTCTATGTTAAAAAAGAACCCAGACTCTTTATACTCAAATTTCATTCTATTCATACGTTTACTCCAGCCAATTTATTGCCTACCTCCAAAATAGTCTTCTAGTTAATAACTTCAGGTTTCAAAGAATGGTTTTTCATTTCTTTCTCGATCTCCATATCATTTATAAGATTTCTCTCATTTTAGTAAAGAAGCTCAGTCATGAAGGTGCCAATTTACTGCCTACCTCCAAAATAGTCTTCTAGTTAATAACTTCAGGTTTCGAATAATGGTTTTTCATTTCTTTCTCGATCTCCATATCATTTATAAGATTTCTCTCATTTTAGTAAAGAAGCTCAGTCATGAAGGTGCCAATTTACTGCCTACCTCCAAAATAGTCTTCTAGTTAATAACTTGAGGTTTCGAAGAATGGTTTTTCATTTCTCTCTCGATCTCCATATCATTTATAAGATTTCTCTCATTTTAGTAAAGAAGCTCAGTCATGAAGGTTTTCCTTCTTGCCCGTCACTAATTTGTGAGAAAAGATAGCTTTCTTCCCCTTTGAGGCTGCCCTTCGCATGTCTGTCATCACCCACTCTTTCTCCTCCGGGAAGCAGCCTGCCACCTTCTTTCTTGTCTAAGCCCTTGGTTTAACCTAAATTAGGGGCTCCTTGTTTTTCGTCAAATCCTCAAACAGCTCCTTGTTTCACTGCTTTATTTTCTATATAGGTTTCAATTTATGCGTAAATTTAAAAGGCGACTAATCACTGTTAGTAGGAGTATATTAGTACATCAGAGGGCATGTTTTGTATTTTGGCAATAGAACAGAACAATGTTCTAGGGTGGGGTTATCTTGCCTTTCTATATTGGAATGGCAGTTCTATATTTCAATACAATCAAGAGTAAGGAAGTATCTTTACAGAAGTGTATTCAGAAGGTACAAAAAGATATATCATTTTTTACTGCACCTACAAAATGAAACCTGTATCACACTTATAGGAGAAGATAGGCTCTAATCTGATTGTAGGCACCCACAAGCTTGTCTCTGTTGTCCTTGTCTACAGAAAGTGGTTTATTCTGTTGAATGATAGACAAATTATTGATTTCATCCTTGCTTGCAATAAAGAGATTAATGAGTTTTGTTTTCAAAATTGATTGGGATGGCCTATGATCATGTAGATTGAGGCTGATGGTTCTCTTGGAAAGGAAGGCTTTTCTGTCTTTATTACGAAAGACCAAGGAAAATTAGTATAAATTCCTTTTCCTCTTCTCTTCCAATGTTCCATGTAGCTGACGTGGAAGTAGGTTTCTCAAGAAAGCAGCTATATCACGGAAGTTTTTATTGTTGAATTCTTTCCATTCATCCACTGACAATTTGCAGAAGCTAAATCCTTTTACGGATTGACCAGCACATGAGAAATTTTTTCTTCAACCTGCAGATTATTTGGAAGATTTCACGACTCCACATTAAGCTTTACAAGAGTGTGTCAACCAGCATAGCCCCCATAGATGAGAAAGATACCTATTATCATTCTAAAGGTTGATGGTTCGATCCCCATATTGTAATTGTTGAATTCAAAATCACAAGATCCTATGGGGGCGGTCGACAAAAAACACAGGGTCCTTCATTCGCTGCCTTCAACAACTAATTATCTTGGACGGTTAATGGTGGAGAAGGCAGAAAGCAAAATTAAGTTGACACACTGCCTCTGTGGGGGGAGGGAAGATGACCTTTGTAGAAAGTTATGCTTGCCATCACTATTATTCTATTTCTTGCCCATCTTTATTTAAGATTTCCTTCAAACAGGCTGTGGCTACTGAAAAAATATTGTCTTTCTTTAATGAACTGGGCATTGTAAATTTCAAAAAGAAAGATGTGGTTTTATTTTGCTAAAATGGCTACTGAAGCTTCCAATGGTGGAGAAGAGAACTTAGCAGCGTTAGGTATTATTAAATTATGGCTAGATACTCGTTCTCTTGACTGGAGTTAAATTTCCCTCACTTTTCTAAAGCTAAATGCTTCCGACAGGGTTGTTTTGTGGCTTTGGGAATTTTTTTTTTC

mRNA sequence

GGAGACTCACGGTGAAGAAATGGCGCGAAGGGGGAAAAGAACCAATAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCACCTCTTCTGCCCCCCCGCCGTCGTCGTCTTCACAGTCGCATTCCTCATCGCAATTGCACTCACATTCTTCCTCCAAGTCCGGCGGTGGCTCTGGCGGTTTGGTCCCTTCGAAATCTACTCTTTACGTTTCCAATTTCGACTTCTCCCTCACCAATTCCGACCTCCATACTCTATTTTCCACCTTCGGTAAGATCGCCCGTGTTACAGTGCTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCTTTCATCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATTGCGACTGACAATGGCCGCGCCGCTGAATTCATAAGGAAGAGGGTTTACAAGGATAAGAGTAGGTGCTACGAGTGTGGCGCAGTTGACGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCGGAACCGAAGCGGGGGAGAAGAGGTGGAGCCGGTGCCAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGATTGCTGACGGGCGGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAACGAGTTATTTCAGTGACGAGAGTGATGAAGATGAGTAATTTCTAGTTTATCTCTTTGGAAAGAGTTCGCGAAGATTATTTGGAAGATTTCACGACTCCACATTAAGCTTTACAAGAGTGTGTCAACCAGCATAGCCCCCATAGATGAGAAAGATACCTATTATCATTCTAAAGGTTGATGGTTCGATCCCCATATTGTAATTGTTGAATTCAAAATCACAAGATCCTATGGGGGCGGTCGACAAAAAACACAGGGTCCTTCATTCGCTGCCTTCAACAACTAATTATCTTGGACGGTTAATGGTGGAGAAGGCAGAAAGCAAAATTAAGTTGACACACTGCCTCTGTGGGGGGAGGGAAGATGACCTTTGTAGAAAGTTATGCTTGCCATCACTATTATTCTATTTCTTGCCCATCTTTATTTAAGATTTCCTTCAAACAGGCTGTGGCTACTGAAAAAATATTGTCTTTCTTTAATGAACTGGGCATTGTAAATTTCAAAAAGAAAGATGTGGTTTTATTTTGCTAAAATGGCTACTGAAGCTTCCAATGGTGGAGAAGAGAACTTAGCAGCGTTAGGTATTATTAAATTATGGCTAGATACTCGTTCTCTTGACTGGAGTTAAATTTCCCTCACTTTTCTAAAGCTAAATGCTTCCGACAGGGTTGTTTTGTGGCTTTGGGAATTTTTTTTTTC

Coding sequence (CDS)

ATGGCGCGAAGGGGGAAAAGAACCAATAACCCTAATAGCGACAGCGACGACGACGAAACCTTCTATTACCGATATCCCTCCGCCACCTCTTCTGCCCCCCCGCCGTCGTCGTCTTCACAGTCGCATTCCTCATCGCAATTGCACTCACATTCTTCCTCCAAGTCCGGCGGTGGCTCTGGCGGTTTGGTCCCTTCGAAATCTACTCTTTACGTTTCCAATTTCGACTTCTCCCTCACCAATTCCGACCTCCATACTCTATTTTCCACCTTCGGTAAGATCGCCCGTGTTACAGTGCTGAAAGATCGCCAGACTCGCAAGTCTCGCGGCGTTGCTTTCATCCAGTTTATTTCTCAGGACGACGCGGTCAAGGCCGCGAAACAGATGCACGGGAAGATTTTGAATGGCCGTGTTCTTAAGGCTGCTATTGCGACTGACAATGGCCGCGCCGCTGAATTCATAAGGAAGAGGGTTTACAAGGATAAGAGTAGGTGCTACGAGTGTGGCGCAGTTGACGGGCATTTGTCTTATGAGTGCCCTAAAAATCAATTGGGGCCAAGGGAGCGACCGGAACCGAAGCGGGGGAGAAGAGGTGGAGCCGGTGCCAGGCACGAGGAGGATTGGGGATCGGATGTTGGAGAAGGGTTCGAGGATGACAATTGGGCCTCGGTGGTGGATGGAGATGCGGACCAGAGATTGCTGACGGGCGGTGAGAACGTTGTAGAGAAGAAAAAAGCGAAGAAAACGAGTTATTTCAGTGACGAGAGTGATGAAGATGAGTAA

Protein sequence

MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVVEKKKAKKTSYFSDESDEDE
Homology
[Close]
BLAST of Tan0004564 vs. ExPASy Swiss-Prot
Match: Q9CAE4 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP31 PE=2 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 6.6e-73
Identity = 163/267 (61.05%), Postives = 192/267 (71.91%), Query Frame = 0 

Query: 6   KRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPS 65
           K+    +SD ++D+TFYYRY S   +APPPS+     SSS      SS  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSV--AAPPPSNPKHQPSSSA----KSSAPGGGSGGLAPS 61

Query: 66  KSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAA 125
           KSTLYVSN DFSLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEP--KRGRR-GGAGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGG 245
           RERP P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 246 ENVVE----KKKAKKTSYFSDESDEDE 260
               E    K+K KK SYFSDESD+++
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]
BLAST of Tan0004564 vs. ExPASy Swiss-Prot
Match: Q499V6 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Zcrb1 PE=2 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.5e-42
Identity = 101/214 (47.20%), Postives = 137/214 (64.02%), Query Frame = 0 

Query: 59  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 118
           SGGL PSKST+YVSN  FSLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVD 238
           PKN LG RE P+ K  ++       EE+    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKVPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 GDADQRLLTGGENVVE---KKKAKKTSYFSDESD 257
                R  TGG +  +   + + KK++YFSDE +
Sbjct: 182 EQNKWRPSTGGPSTSDDSRRPRIKKSAYFSDEEE 214

[Close]
BLAST of Tan0004564 vs. ExPASy Swiss-Prot
Match: Q9CZ96 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus OX=10090 GN=Zcrb1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.3e-41
Identity = 100/214 (46.73%), Postives = 137/214 (64.02%), Query Frame = 0 

Query: 59  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 118
           SGGL PSKST+YVSN  FSLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A+   + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSALNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGAGARHEEDWGS-DVGEGFEDD------------NWASVVD 238
           PKN LG RE P+ K  ++       EE+    +V E   +D              A + +
Sbjct: 122 PKNMLGEREPPKKKEKKKKRKLPEPEEEIEEVEVSEEEGEDPALDSLSQAIAFQQAKIEE 181

Query: 239 GDADQRLLTGGENVVE---KKKAKKTSYFSDESD 257
             +  R   GG +  +   + + KK++YFSDE +
Sbjct: 182 EQSKWRPNPGGPSTSDDSRRPRIKKSAYFSDEEE 214

[Close]
BLAST of Tan0004564 vs. ExPASy Swiss-Prot
Match: Q5SP50 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio OX=7955 GN=zcrb1 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 3.9e-41
Identity = 101/215 (46.98%), Postives = 132/215 (61.40%), Query Frame = 0 

Query: 59  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 118
           SGGL PSKST+YVSN  FSLTNSD+H L S +GK+ +VT++KD+ TR S+GVAF+ F+ +
Sbjct: 2   SGGLAPSKSTVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDR 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           + A   ++ ++ K L GR++KA+IA DNGRAAEFIRKR Y DKS+CYECG  +GHLSY C
Sbjct: 62  ESAYNCSRSLNNKQLFGRMVKASIAIDNGRAAEFIRKRNYTDKSKCYECGE-EGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 238
           PKN LG RE P  K  ++     + EE    D  E  ED    S+    A Q+     E 
Sbjct: 122 PKNLLGEREPPPKKEKKKKKKVQQPEEVEPEDSEEEGEDPALDSLSQAIAFQQARIEEEE 181

Query: 239 VVEKKKA-----------------KKTSYFSDESD 257
              K+ A                 KK++YFSDE +
Sbjct: 182 KRRKQAAEDASQASTSEDTHKPRIKKSAYFSDEEE 215

[Close]
BLAST of Tan0004564 vs. ExPASy Swiss-Prot
Match: Q8TBF4 (Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens OX=9606 GN=ZCRB1 PE=1 SV=2)

HSP 1 Score: 169.9 bits (429), Expect = 3.9e-41
Identity = 97/199 (48.74%), Postives = 129/199 (64.82%), Query Frame = 0 

Query: 59  SGGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQ 118
           SGGL PSKST+YVSN  FSLTN+DL+ +FS +GK+ +VT++KD+ TRKS+GVAFI F+ +
Sbjct: 2   SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDK 61

Query: 119 DDAVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYEC 178
           D A    + ++ K L GRV+KA+IA DNGRAAEFIR+R Y DKS+CYECG   GHLSY C
Sbjct: 62  DSAQNCTRAINNKQLFGRVIKASIAIDNGRAAEFIRRRNYFDKSKCYECGE-SGHLSYAC 121

Query: 179 PKNQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGEN 238
           PKN LG RE P+ K  ++       EE+   +  E  ED+     +D  +        + 
Sbjct: 122 PKNMLGEREPPKKKEKKKKKKAPEPEEE--IEEVEESEDEGEDPALDSLSQAIAFQQAKI 181

Query: 239 VVEKKKAKKTSYFSDESDE 258
             E+KK K +S     SD+
Sbjct: 182 EEEQKKWKPSSGVPSTSDD 197

[Close]
BLAST of Tan0004564 vs. NCBI nr
Match: XP_038883985.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida])

HSP 1 Score: 473.0 bits (1216), Expect = 1.6e-129
Identity = 242/259 (93.44%), Postives = 251/259 (96.91%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           MAR+GKRTNNPNSDS+DDETFYYRYPSA SSAPPP S+SQSH SSQ HSHSS+K  GGSG
Sbjct: 1   MARKGKRTNNPNSDSEDDETFYYRYPSAASSAPPPPSASQSHFSSQSHSHSSTKFSGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQM+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKRGRRGG GARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDESDED+
Sbjct: 241 EKKKAKKASYFSDESDEDD 259

[Close]
BLAST of Tan0004564 vs. NCBI nr
Match: XP_008456528.1 (PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo] >KAA0036504.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa] >TYJ99977.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo var. makuwa])

HSP 1 Score: 468.8 bits (1205), Expect = 3.1e-128
Identity = 240/259 (92.66%), Postives = 249/259 (96.14%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           MAR+GK+TNNP SDSD+DETFYYRYPSA SSAPP  SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKRGRRGG GARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]
BLAST of Tan0004564 vs. NCBI nr
Match: XP_022993724.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_022993726.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima])

HSP 1 Score: 454.1 bits (1167), Expect = 7.9e-124
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           M+R+GKR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKR R+GG GARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]
BLAST of Tan0004564 vs. NCBI nr
Match: KAG7016330.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           M+R+ KR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKR R+GG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]
BLAST of Tan0004564 vs. NCBI nr
Match: XP_022939952.1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_022939953.1 U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata])

HSP 1 Score: 453.4 bits (1165), Expect = 1.3e-123
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           M+R+ KR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKR R+GG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]
BLAST of Tan0004564 vs. ExPASy TrEMBL
Match: A0A5A7SYZ1 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold360G00210 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.5e-128
Identity = 240/259 (92.66%), Postives = 249/259 (96.14%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           MAR+GK+TNNP SDSD+DETFYYRYPSA SSAPP  SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKRGRRGG GARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]
BLAST of Tan0004564 vs. ExPASy TrEMBL
Match: A0A1S3C324 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 GN=LOC103496454 PE=4 SV=1)

HSP 1 Score: 468.8 bits (1205), Expect = 1.5e-128
Identity = 240/259 (92.66%), Postives = 249/259 (96.14%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           MAR+GK+TNNP SDSD+DETFYYRYPSA SSAPP  SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MARKGKKTNNPTSDSDEDETFYYRYPSAASSAPPLPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKRGRRGG GARHEEDWGSDVGE FEDDNWASVVDGDADQRLLTGGEN+V
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDVGEAFEDDNWASVVDGDADQRLLTGGENIV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES ED+
Sbjct: 241 EKKKAKKASYFSDESGEDD 259

[Close]
BLAST of Tan0004564 vs. ExPASy TrEMBL
Match: A0A6J1JX53 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111489639 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 3.8e-124
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           M+R+GKR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MSRKGKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKR R+GG GARHEEDWGSD GEGFEDD WASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDKWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]
BLAST of Tan0004564 vs. ExPASy TrEMBL
Match: A0A6J1FIA0 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111445663 PE=4 SV=1)

HSP 1 Score: 453.4 bits (1165), Expect = 6.5e-124
Identity = 233/259 (89.96%), Postives = 240/259 (92.66%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           M+R+ KR  NPNSDSDDDETFYYRYPSATSSAPPP SSSQSH SSQ HSHSS+KSGGGSG
Sbjct: 1   MSRKEKRAKNPNSDSDDDETFYYRYPSATSSAPPPPSSSQSHFSSQSHSHSSTKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSNFD+SLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRG AF+QFISQDD
Sbjct: 61  GLVPSKSTVYVSNFDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGAAFVQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVK  KQMHGKILNGR LK AIA DNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK
Sbjct: 121 AVKTVKQMHGKILNGRALKVAIANDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKR R+GG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLT  ENVV
Sbjct: 181 NQLGPRERPEPKRVRKGGVGARHEEDWGSDDGEGFEDDNWASVVDGDADQRLLTSSENVV 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           EKKKAKK SYFSDES EDE
Sbjct: 241 EKKKAKKASYFSDESGEDE 259

[Close]
BLAST of Tan0004564 vs. ExPASy TrEMBL
Match: A0A6J1BY38 (U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX=3673 GN=LOC111006640 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 5.5e-123
Identity = 235/259 (90.73%), Postives = 243/259 (93.82%), Query Frame = 0 

Query: 1   MARRGKRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSG 60
           MAR+GKRT NPNSDSDDDETFYYRYPSA SSAPPPSSS     SSQ HSHSS KSGGGSG
Sbjct: 1   MARKGKRT-NPNSDSDDDETFYYRYPSAASSAPPPSSS----QSSQAHSHSSIKSGGGSG 60

Query: 61  GLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDD 120
           GLVPSKST+YVSN D+SLTNSDLHTLFSTFGKIARVTVLKDRQTR+SRGVAFIQFISQDD
Sbjct: 61  GLVPSKSTVYVSNVDYSLTNSDLHTLFSTFGKIARVTVLKDRQTRRSRGVAFIQFISQDD 120

Query: 121 AVKAAKQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPK 180
           AVKA K+M+GKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECP+
Sbjct: 121 AVKACKEMNGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPR 180

Query: 181 NQLGPRERPEPKRGRRGGAGARHEEDWGSDVGEGFEDDNWASVVDGDADQRLLTGGENVV 240
           NQLGPRERPEPKRGRRGG GARHEEDWGSD GEGFEDDNWASVVDGDADQRLLTGGENV 
Sbjct: 181 NQLGPRERPEPKRGRRGGVGARHEEDWGSDGGEGFEDDNWASVVDGDADQRLLTGGENVA 240

Query: 241 EKKKAKKTSYFSDESDEDE 260
           E+KK KK SYFSDESDEDE
Sbjct: 241 ERKKGKKASYFSDESDEDE 254

[Close]
BLAST of Tan0004564 vs. TAIR 10
Match: AT3G10400.1 (RNA recognition motif and CCHC-type zinc finger domains containing protein )

HSP 1 Score: 275.4 bits (703), Expect = 4.7e-74
Identity = 163/267 (61.05%), Postives = 192/267 (71.91%), Query Frame = 0 

Query: 6   KRTNNPNSDSDDDETFYYRYPSATSSAPPPSSSSQSHSSSQLHSHSSSKSGGGSGGLVPS 65
           K+    +SD ++D+TFYYRY S   +APPPS+     SSS      SS  GGGSGGL PS
Sbjct: 2   KKRKIHHSDDEEDDTFYYRYSSV--AAPPPSNPKHQPSSSA----KSSAPGGGSGGLAPS 61

Query: 66  KSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAA 125
           KSTLYVSN DFSLTNSD+HTLFSTFGK+ARVTVLKDR TR+SRGVAF+ ++S++DA KAA
Sbjct: 62  KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 121

Query: 126 KQMHGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKSRCYECGAVDGHLSYECPKNQLGP 185
           + M  KILNGR L  +IA DNGRA+EFI+KRVYKDKSRCYECG  +GHLSYECPKNQLGP
Sbjct: 122 RSMDAKILNGRKLTVSIAADNGRASEFIKKRVYKDKSRCYECGD-EGHLSYECPKNQLGP 181

Query: 186 RERPEP--KRGRR-GGAGARHEEDWGSD------VGEGFEDDNWASVVDGDADQRLLTGG 245
           RERP P  KRGRR    G   E  W +         E FE++NWASVVD +A +RL    
Sbjct: 182 RERPPPPKKRGRRKEEEGEAEEISWSAAAPSLAVAEEEFEEENWASVVDNEAGERLRKRE 241

Query: 246 ENVVE----KKKAKKTSYFSDESDEDE 260
               E    K+K KK SYFSDESD+++
Sbjct: 242 AEEEEERRMKRKEKKVSYFSDESDDED 261

[Close]
BLAST of Tan0004564 vs. TAIR 10
Match: AT3G23830.1 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0 

Query: 60  GGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQD 119
           G L    S L+V    +   +S L   F++FG++   TV+ DR+T +SRG  F+ F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 150
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]
BLAST of Tan0004564 vs. TAIR 10
Match: AT3G23830.2 (glycine-rich RNA-binding protein 4 )

HSP 1 Score: 67.4 bits (163), Expect = 1.9e-11
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 0 

Query: 60  GGLVPSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQD 119
           G L    S L+V    +   +S L   F++FG++   TV+ DR+T +SRG  F+ F  +D
Sbjct: 28  GSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCED 87

Query: 120 DAVKAAKQMHGKILNGRVLKAAIATDNGRA 150
            A  A K+M GK LNGR ++  +AT+   A
Sbjct: 88  SANNAIKEMDGKELNGRQIRVNLATERSSA 117

[Close]
BLAST of Tan0004564 vs. TAIR 10
Match: AT4G20030.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-10
Identity = 36/85 (42.35%), Postives = 49/85 (57.65%), Query Frame = 0 

Query: 64  PSKSTLYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVK 123
           P  S + V N  FS +   L   FS FG+IA V ++KD   ++S+G AFIQF SQDDA  
Sbjct: 37  PLASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFL 96

Query: 124 AAKQMHGKILNGRVLKAAIATDNGR 149
           A + M  ++ NGR++   IA    R
Sbjct: 97  AIETMDRRMYNGRMIYIDIAKPGKR 121

[Close]
BLAST of Tan0004564 vs. TAIR 10
Match: AT3G46020.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 34/94 (36.17%), Postives = 56/94 (59.57%), Query Frame = 0 

Query: 69  LYVSNFDFSLTNSDLHTLFSTFGKIARVTVLKDRQTRKSRGVAFIQFISQDDAVKAAKQM 128
           L+VS      T+  L  LFS FG+I    +++D +T++ +G  FI F S+DDA KA K +
Sbjct: 9   LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68

Query: 129 HGKILNGRVLKAAIATDNGRAAEFIRKRVYKDKS 163
            GKI++GR++   +A    + AE +R  +  +K+
Sbjct: 69  DGKIVDGRLIFVEVA----KNAEEVRAGINSNKA 98

The following BLAST results are available for this feature:
BLAST of Tan0004564 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9CAE46.6e-7361.05U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Arabidopsis thaliana O... [more]
Q499V63.5e-4247.20Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Rattus norve... [more]
Q9CZ961.3e-4146.73Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Mus musculus... [more]
Q5SP503.9e-4146.98Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Danio rerio ... [more]
Q8TBF43.9e-4148.74Zinc finger CCHC-type and RNA-binding motif-containing protein 1 OS=Homo sapiens... [more]
BLAST of Tan0004564 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038883985.11.6e-12993.44U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Benincasa hispida][more]
XP_008456528.13.1e-12892.66PREDICTED: U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucumis melo]... [more]
XP_022993724.17.9e-12489.96U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita maxima] >XP_02... [more]
KAG7016330.11.3e-12389.96U11/U12 small nuclear ribonucleoprotein 31 kDa protein, partial [Cucurbita argyr... [more]
XP_022939952.11.3e-12389.96U11/U12 small nuclear ribonucleoprotein 31 kDa protein [Cucurbita moschata] >XP_... [more]
BLAST of Tan0004564 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SYZ11.5e-12892.66U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo var. maku... [more]
A0A1S3C3241.5e-12892.66U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucumis melo OX=3656 G... [more]
A0A6J1JX533.8e-12489.96U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita maxima OX=36... [more]
A0A6J1FIA06.5e-12489.96U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Cucurbita moschata OX=... [more]
A0A6J1BY385.5e-12390.73U11/U12 small nuclear ribonucleoprotein 31 kDa protein OS=Momordica charantia OX... [more]
BLAST of Tan0004564 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G10400.14.7e-7461.05RNA recognition motif and CCHC-type zinc finger domains containing protein [more]
AT3G23830.11.9e-1137.78glycine-rich RNA-binding protein 4 [more]
AT3G23830.21.9e-1137.78glycine-rich RNA-binding protein 4 [more]
AT4G20030.11.6e-1042.35RNA-binding (RRM/RBD/RNP motifs) family protein [more]
AT3G46020.13.6e-1036.17RNA-binding (RRM/RBD/RNP motifs) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 68..141
e-value: 1.7E-24
score: 97.4
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 69..139
e-value: 1.4E-20
score: 72.9
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 67..145
score: 18.751446
IPR003954RNA recognition motif domain, eukaryoteSMARTSM00361rrm2_1coord: 68..141
e-value: 3.2E-5
score: 33.4
NoneNo IPR availableGENE3D4.10.60.10coord: 154..197
e-value: 1.9E-5
score: 26.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 183..209
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 179..259
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 236..253
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availablePANTHERPTHR46259:SF1ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1coord: 12..258
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 11..142
e-value: 1.6E-27
score: 98.2
IPR044598Zinc finger CCHC-type and RNA-binding motif-containing protein 1PANTHERPTHR46259ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1coord: 12..258
IPR034219ZCRB1, RNA recognition motifCDDcd12393RRM_ZCRB1coord: 66..143
e-value: 7.96582E-40
score: 130.898
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 10..143

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0004564.1Tan0004564.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032502 developmental process
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0051302 regulation of cell division
cellular_component GO:0005689 U12-type spliceosomal complex
molecular_function GO:0003723 RNA binding
molecular_function GO:0003676 nucleic acid binding