Tan0004557 (gene) Snake gourd v1

Overview


Name	Tan0004557
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like
Location	LG08: 3417823 .. 3419043 (-)
RNA-Seq Expression	Tan0004557
Synteny	Tan0004557

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTACTCATTTCTCTCTTCTTTCAACACTGTTTAACTCTCAGTTTTCTTCCCCTTTTTCTCACCTGAAAAAATAAAAAAAAATAAATAAAAAATCCCTTTCAAATTCTCTCTTTTATACAACTCCATTTCTTCTAGTCTTCTTGTAAAGGAAACAAAAACTCCCCCTTTTGGTAAAAAGAAAATATGATCAATATCTTTTGATGATCTTTAATTCTCATTTTTCTCACATTCATTGTTCTTTTTCTTCTCTTGATCTCTTCATGCCATGCAAAAGAAAAAACCCATTTGTTGGTTTTTTGTTTTCTTTCATTTTTCTCACTTGATTTGGGTTTTTCATTTCTAGCTATACCCTTTTGTTTTCTCTTTCAAAAACCCTAAAATTTGAAGTGGGTTCTCTTCAAAACCCTAAAAGATGAGATTTTTCTTCCACCCTTAACAAAAAGATCCAATCTTTCTACTTATTTCTTTATATTTCTCTCCTTTTTTTCTCTTTTTTGTTTGATTGATTGTTTTTGTCTTTCTTTTGGGGTTTTTTTAATGGATTTGTTCTCAGAATCATCATCCAATCCCACTAATTATGACACCAACACGGCCGCCACCACCGCCGCCGCCACCAGCATCACCGCCGTTGCAGCATGTTCGCCGTCGTCATCCTCCTCCGCCGCCGCCACACCAAGCCGGTACGAGAACCAAAAACGGCGAGATTGGAATACTTTCTGTCAGTACCTCCGCAACCACCGGCCGCCGTTAGCTCTGCCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTAGATCAGTTCGGGAAGACCAAAGTCCATAACCAGACCTGCCCGTTTTTCGGCCTGCCCAACCCACCTGCCCCTTGCCCCTGCCCGCTCCGGCAAGCCTGGGGCAGCCTGGACGCCCTCATCGGCCGGCTCCGGGCAGCCTACGAAGAAAACGGTGGCCGGCCGGAGGCCAACCCATTTGGAGCTAGAGCCGTTCGACTTTATTTGAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGAGTTAGCTATGAGAAGAAGAGAAAAAGACCAAAGCAAAAGATTGCTCATTCAAATCAAGATGGTGCAACTTGAACAACAACACAACAATTTTTATATCTCTCTATATATATTATATTATGTATAAGAGAATTTGTAATCTCTCTTTTTTCTTTTTTCTATTTTCAATTCAGAATTGCAA

mRNA sequence

AATTACTCATTTCTCTCTTCTTTCAACACTGTTTAACTCTCAGTTTTCTTCCCCTTTTTCTCACCTGAAAAAATAAAAAAAAATAAATAAAAAATCCCTTTCAAATTCTCTCTTTTATACAACTCCATTTCTTCTAGTCTTCTTGTAAAGGAAACAAAAACTCCCCCTTTTGGTAAAAAGAAAATATGATCAATATCTTTTGATGATCTTTAATTCTCATTTTTCTCACATTCATTGTTCTTTTTCTTCTCTTGATCTCTTCATGCCATGCAAAAGAAAAAACCCATTTGTTGGTTTTTTGTTTTCTTTCATTTTTCTCACTTGATTTGGGTTTTTCATTTCTAGCTATACCCTTTTGTTTTCTCTTTCAAAAACCCTAAAATTTGAAGTGGGTTCTCTTCAAAACCCTAAAAGATGAGATTTTTCTTCCACCCTTAACAAAAAGATCCAATCTTTCTACTTATTTCTTTATATTTCTCTCCTTTTTTTCTCTTTTTTGTTTGATTGATTGTTTTTGTCTTTCTTTTGGGGTTTTTTTAATGGATTTGTTCTCAGAATCATCATCCAATCCCACTAATTATGACACCAACACGGCCGCCACCACCGCCGCCGCCACCAGCATCACCGCCGTTGCAGCATGTTCGCCGTCGTCATCCTCCTCCGCCGCCGCCACACCAAGCCGGTACGAGAACCAAAAACGGCGAGATTGGAATACTTTCTGTCAGTACCTCCGCAACCACCGGCCGCCGTTAGCTCTGCCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTAGATCAGTTCGGGAAGACCAAAGTCCATAACCAGACCTGCCCGTTTTTCGGCCTGCCCAACCCACCTGCCCCTTGCCCCTGCCCGCTCCGGCAAGCCTGGGGCAGCCTGGACGCCCTCATCGGCCGGCTCCGGGCAGCCTACGAAGAAAACGGTGGCCGGCCGGAGGCCAACCCATTTGGAGCTAGAGCCGTTCGACTTTATTTGAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGAGTTAGCTATGAGAAGAAGAGAAAAAGACCAAAGCAAAAGATTGCTCATTCAAATCAAGATGGTGCAACTTGAACAACAACACAACAATTTTTATATCTCTCTATATATATTATATTATGTATAAGAGAATTTGTAATCTCTCTTTTTTCTTTTTTCTATTTTCAATTCAGAATTGCAA

Coding sequence (CDS)

ATGGATTTGTTCTCAGAATCATCATCCAATCCCACTAATTATGACACCAACACGGCCGCCACCACCGCCGCCGCCACCAGCATCACCGCCGTTGCAGCATGTTCGCCGTCGTCATCCTCCTCCGCCGCCGCCACACCAAGCCGGTACGAGAACCAAAAACGGCGAGATTGGAATACTTTCTGTCAGTACCTCCGCAACCACCGGCCGCCGTTAGCTCTGCCGATGTGCAGCGGCGCTCACGTGCTGGAATTTCTCCGGTACTTAGATCAGTTCGGGAAGACCAAAGTCCATAACCAGACCTGCCCGTTTTTCGGCCTGCCCAACCCACCTGCCCCTTGCCCCTGCCCGCTCCGGCAAGCCTGGGGCAGCCTGGACGCCCTCATCGGCCGGCTCCGGGCAGCCTACGAAGAAAACGGTGGCCGGCCGGAGGCCAACCCATTTGGAGCTAGAGCCGTTCGACTTTATTTGAGGGAAGTTCGTGATTTTCAGGCGAAAGCAAGAGGAGTTAGCTATGAGAAGAAGAGAAAAAGACCAAAGCAAAAGATTGCTCATTCAAATCAAGATGGTGCAACTTGA

Protein sequence

MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQKIAHSNQDGAT

Homology

[Close]

BLAST of Tan0004557 vs. ExPASy Swiss-Prot
Match: Q6NNI3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LSH1 PE=1 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 2.3e-70
Identity = 125/141 (88.65%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 37  SSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKV 96
           SS+     + SRYENQKRRDWNTFCQYLRNHRPPL+LP CSGAHVLEFLRYLDQFGKTKV
Sbjct: 14  SSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKV 73

Query: 97  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYL 156
           H+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PEANPFG+RAVRL+L
Sbjct: 74  HHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFL 133

Query: 157 REVRDFQAKARGVSYEKKRKR 178
           REVRDFQAKARGVSYEKKRKR
Sbjct: 134 REVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of Tan0004557 vs. ExPASy Swiss-Prot
Match: Q9M836 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LSH2 PE=1 SV=1)

HSP 1 Score: 255.0 bits (650), Expect = 6.8e-67
Identity = 130/181 (71.82%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTF 60
           MDL S+   N  N + NT+ +T   +S +     SP SS       SRYENQKRRDWNTF
Sbjct: 1   MDLISQ---NHNNRNPNTSLSTQTPSSFS-----SPPSS-------SRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNH PPL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180
           WGSLDALIGRLRAAYEENGG PE +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   
Sbjct: 121 WGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNN 166

Query: 181 K 182
           K
Sbjct: 181 K 166

[Close]

BLAST of Tan0004557 vs. ExPASy Swiss-Prot
Match: Q7XDD0 (Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.4e-66
Identity = 122/147 (82.99%), Postives = 132/147 (89.80%), Query Frame = 0


Query: 33  ACSPSSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFG 92
           A   +S+S+A A+PSRYE+QKRRDWNTF QYLRNHRPPL+L  CSGAHVLEFLRYLDQFG
Sbjct: 25  ATGATSASAAGASPSRYESQKRRDWNTFGQYLRNHRPPLSLARCSGAHVLEFLRYLDQFG 84

Query: 93  KTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPEANPFGARAV 152
           KTKVH   CPFFG P PPAPCPCPLRQAWGSLDAL+GRLRAAYEENGGRPE NPFGARAV
Sbjct: 85  KTKVHAPACPFFGHPAPPAPCPCPLRQAWGSLDALVGRLRAAYEENGGRPENNPFGARAV 144

Query: 153 RLYLREVRDFQAKARGVSYE-KKRKRP 179
           RLYLREVR+ QA+ARGVSYE KKRK+P
Sbjct: 145 RLYLREVREHQARARGVSYEKKKRKKP 171

[Close]

BLAST of Tan0004557 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.8e-66
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 22  TAAATSITAVAACSP-SSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAH 81
           +++ T  T   A  P SSSSS +A  SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAH
Sbjct: 27  SSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 86

Query: 82  VLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG 141
           VLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 87  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG 146

Query: 142 RPEANPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 179
           +PE NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP
Sbjct: 147 KPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Tan0004557 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 9.8e-66
Identity = 130/169 (76.92%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 12  TNYDTNTAATTAAATSITAVAACSPSSSSSAAATP-SRYENQKRRDWNTFCQYLRNHRPP 71
           TN   NT    AAA + T  ++ S SSS  +     SRYENQKRRDWNTF QYLRNHRPP
Sbjct: 11  TNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPP 70

Query: 72  LALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGR 131
           L+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGR
Sbjct: 71  LSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGR 130

Query: 132 LRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 179
           LRAA+EENGG PE NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 131 LRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Tan0004557 vs. NCBI nr
Match: XP_022965962.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima])

HSP 1 Score: 344.0 bits (881), Expect = 8.5e-91
Identity = 175/192 (91.15%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYD-TNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNT 60
           MDLFSESSSNPT YD TNTAA  AAA  +TA  + S SSS++AAATPSRYENQKRRDWNT
Sbjct: 1   MDLFSESSSNPTPYDTTNTAA--AAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNT 60

Query: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ
Sbjct: 61  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180
           AWGSLDALIGRLRAAYEENGGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 121 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180

Query: 181 QKIAHSNQDGAT 192
           QKIA+SNQDGAT
Sbjct: 181 QKIANSNQDGAT 190

[Close]

BLAST of Tan0004557 vs. NCBI nr
Match: XP_022938293.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata] >KAG7021182.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 174/192 (90.62%), Postives = 181/192 (94.27%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYD-TNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNT 60
           MDLFSESSSNPT YD TNTAA  AAA  +TA  + S SSS++A ATPSRYENQKRRDWNT
Sbjct: 1   MDLFSESSSNPTPYDTTNTAA--AAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNT 60

Query: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ
Sbjct: 61  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180
           AWGSLDALIGRLRAAYEENGGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 121 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180

Query: 181 QKIAHSNQDGAT 192
           QKIA+SNQDGAT
Sbjct: 181 QKIANSNQDGAT 190

[Close]

BLAST of Tan0004557 vs. NCBI nr
Match: KAG6586335.1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 341.3 bits (874), Expect = 5.5e-90
Identity = 171/191 (89.53%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTF 60
           MDLFSESSSNPT YDT     TAAA  +TA  + S SSS++A ATPSRYENQKRRDWNTF
Sbjct: 1   MDLFSESSSNPTPYDT---TNTAAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180
           WGSLDALIGRLRAAYEENGGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ
Sbjct: 121 WGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180

Query: 181 KIAHSNQDGAT 192
           KIA+SNQDGAT
Sbjct: 181 KIANSNQDGAT 188

[Close]

BLAST of Tan0004557 vs. NCBI nr
Match: XP_023538298.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 340.1 bits (871), Expect = 1.2e-89
Identity = 173/192 (90.10%), Postives = 180/192 (93.75%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYD-TNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNT 60
           MDLFSESSSNP  YD TNTAA  AAA  +TA  + S SSS++A ATPSRYENQKRRDWNT
Sbjct: 1   MDLFSESSSNPIPYDTTNTAA--AAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNT 60

Query: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ
Sbjct: 61  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180
           AWGSLDALIGRLRAAYEENGGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 121 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180

Query: 181 QKIAHSNQDGAT 192
           QKIA+SNQDGAT
Sbjct: 181 QKIANSNQDGAT 190

[Close]

BLAST of Tan0004557 vs. NCBI nr
Match: XP_038890681.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida])

HSP 1 Score: 312.0 bits (798), Expect = 3.6e-81
Identity = 156/186 (83.87%), Postives = 164/186 (88.17%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTF 60
           MDLFSESSSNP    T TA           VAA +P ++S++AATPSRYENQKRRDWNTF
Sbjct: 1   MDLFSESSSNPPTTYTTTA----------TVAATAPPTASASAATPSRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNHRPPLAL MCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHRPPLALQMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180
           WGSLDALIGRLRAAYEENGGR E NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ
Sbjct: 121 WGSLDALIGRLRAAYEENGGRAEGNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 176

Query: 181 KIAHSN 187
           K+ +S+
Sbjct: 181 KVTNSS 176

[Close]

BLAST of Tan0004557 vs. ExPASy TrEMBL
Match: A0A6J1HLQ5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111465684 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 4.1e-91
Identity = 175/192 (91.15%), Postives = 182/192 (94.79%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYD-TNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNT 60
           MDLFSESSSNPT YD TNTAA  AAA  +TA  + S SSS++AAATPSRYENQKRRDWNT
Sbjct: 1   MDLFSESSSNPTPYDTTNTAA--AAAAVVTACPSPSSSSSATAAATPSRYENQKRRDWNT 60

Query: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ
Sbjct: 61  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180
           AWGSLDALIGRLRAAYEENGGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 121 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180

Query: 181 QKIAHSNQDGAT 192
           QKIA+SNQDGAT
Sbjct: 181 QKIANSNQDGAT 190

[Close]

BLAST of Tan0004557 vs. ExPASy TrEMBL
Match: A0A6J1FIH1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111444424 PE=3 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 174/192 (90.62%), Postives = 181/192 (94.27%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYD-TNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNT 60
           MDLFSESSSNPT YD TNTAA  AAA  +TA  + S SSS++A ATPSRYENQKRRDWNT
Sbjct: 1   MDLFSESSSNPTPYDTTNTAA--AAAAVVTACPSPSSSSSATATATPSRYENQKRRDWNT 60

Query: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPL+LPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ
Sbjct: 61  FCQYLRNHRPPLSLPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180
           AWGSLDALIGRLRAAYEENGGRPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 121 AWGSLDALIGRLRAAYEENGGRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180

Query: 181 QKIAHSNQDGAT 192
           QKIA+SNQDGAT
Sbjct: 181 QKIANSNQDGAT 190

[Close]

BLAST of Tan0004557 vs. ExPASy TrEMBL
Match: A0A6J1CPQ1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Momordica charantia OX=3673 GN=LOC111013011 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 5.0e-81
Identity = 159/192 (82.81%), Postives = 164/192 (85.42%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAAC-SPSSSSSAAATPSRYENQKRRDWNT 60
           MDLF+ESSSN  N             S +A A C SP SSSS+ ATPSRYENQKRRDWNT
Sbjct: 1   MDLFAESSSNNNN------------NSGSAAAPCSSPPSSSSSGATPSRYENQKRRDWNT 60

Query: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQ 120
           FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQ CPFFGLPNPPAPCPCPLRQ
Sbjct: 61  FCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQNCPFFGLPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180
           AWGSLDALIGRLRAAY ENG RPE+NPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK
Sbjct: 121 AWGSLDALIGRLRAAYXENGFRPESNPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPK 180

Query: 181 QKIAHSNQDGAT 192
           QKI +S QD  T
Sbjct: 181 QKITNSTQDPPT 180

[Close]

BLAST of Tan0004557 vs. ExPASy TrEMBL
Match: A0A6J1KC51 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=LOC111493577 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.6e-81
Identity = 160/191 (83.77%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTF 60
           MDLFS+SSSNP      T  TT  A      AACSPSSSS+   TPSRYENQKRRDWNTF
Sbjct: 74  MDLFSKSSSNPIPIPPTTTTTTITA------AACSPSSSST--TTPSRYENQKRRDWNTF 133

Query: 61  CQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNHRPPLAL MCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQA
Sbjct: 134 CQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 193

Query: 121 WGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180
           WGSLDALIGRLRAA+EENGGRPEANPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQ
Sbjct: 194 WGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQ 253

Query: 181 KIAHSNQDGAT 192
           K     Q+GAT
Sbjct: 254 K---QKQEGAT 253

[Close]

BLAST of Tan0004557 vs. ExPASy TrEMBL
Match: A0A6J1G4J5 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN=LOC111450676 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 6.6e-81
Identity = 160/191 (83.77%), Postives = 164/191 (85.86%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTF 60
           MDLFS+SSSNP      T  TT  A      AACSPSSSS+   TPSRYENQKRRDWNTF
Sbjct: 1   MDLFSKSSSNPIPIPPTTTTTTITA------AACSPSSSST--TTPSRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNHRPPLAL MCSGAHVLEFLRYLD FGKTKVHNQTCPFFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHRPPLALQMCSGAHVLEFLRYLDHFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180
           WGSLDALIGRLRAA+EENGGRPEANPFGARAVRLYLREVRDFQ KARGVSYEKKRKRPKQ
Sbjct: 121 WGSLDALIGRLRAAFEENGGRPEANPFGARAVRLYLREVRDFQTKARGVSYEKKRKRPKQ 180

Query: 181 KIAHSNQDGAT 192
           K     Q+GAT
Sbjct: 181 K---QKQEGAT 180

[Close]

BLAST of Tan0004557 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 266.5 bits (680), Expect = 1.6e-71
Identity = 125/141 (88.65%), Postives = 131/141 (92.91%), Query Frame = 0


Query: 37  SSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKV 96
           SS+     + SRYENQKRRDWNTFCQYLRNHRPPL+LP CSGAHVLEFLRYLDQFGKTKV
Sbjct: 14  SSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTKV 73

Query: 97  HNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYL 156
           H+Q C FFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG PEANPFG+RAVRL+L
Sbjct: 74  HHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLFL 133

Query: 157 REVRDFQAKARGVSYEKKRKR 178
           REVRDFQAKARGVSYEKKRKR
Sbjct: 134 REVRDFQAKARGVSYEKKRKR 154

[Close]

BLAST of Tan0004557 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 255.0 bits (650), Expect = 4.8e-68
Identity = 130/181 (71.82%), Postives = 145/181 (80.11%), Query Frame = 0


Query: 1   MDLFSESSSNPTNYDTNTAATTAAATSITAVAACSPSSSSSAAATPSRYENQKRRDWNTF 60
           MDL S+   N  N + NT+ +T   +S +     SP SS       SRYENQKRRDWNTF
Sbjct: 1   MDLISQ---NHNNRNPNTSLSTQTPSSFS-----SPPSS-------SRYENQKRRDWNTF 60

Query: 61  CQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQA 120
           CQYLRNH PPL+L  CSGAHVL+FLRYLDQFGKTKVH+Q C FFGLPNPPAPCPCPLRQA
Sbjct: 61  CQYLRNHHPPLSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYEKKRKRPKQ 180
           WGSLDALIGRLRAAYEENGG PE +PFG+R+VR++LREVRDFQAK+RGVSYEKKRKR   
Sbjct: 121 WGSLDALIGRLRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYEKKRKRVNN 166

Query: 181 K 182
           K
Sbjct: 181 K 166

[Close]

BLAST of Tan0004557 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.1 bits (640), Expect = 7.0e-67
Identity = 127/159 (79.87%), Postives = 136/159 (85.53%), Query Frame = 0


Query: 22  TAAATSITAVAACSP-SSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAH 81
           +++ T  T   A  P SSSSS +A  SRYENQKRRDWNTF QYLRNHRPPL+L  CSGAH
Sbjct: 27  SSSVTGATGGEATQPLSSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAH 86

Query: 82  VLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGG 141
           VLEFLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG
Sbjct: 87  VLEFLRYLDQFGKTKVHTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG 146

Query: 142 RPEANPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 179
           +PE NPFGARAVRLYLREVRD Q+KARGVSYE KKRKRP
Sbjct: 147 KPETNPFGARAVRLYLREVRDMQSKARGVSYEKKKRKRP 185

[Close]

BLAST of Tan0004557 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 251.1 bits (640), Expect = 7.0e-67
Identity = 130/169 (76.92%), Postives = 137/169 (81.07%), Query Frame = 0


Query: 12  TNYDTNTAATTAAATSITAVAACSPSSSSSAAATP-SRYENQKRRDWNTFCQYLRNHRPP 71
           TN   NT    AAA + T  ++ S SSS  +     SRYENQKRRDWNTF QYLRNHRPP
Sbjct: 11  TNMSHNTNLMIAAAATTTTTSSSSSSSSGGSGTNQLSRYENQKRRDWNTFGQYLRNHRPP 70

Query: 72  LALPMCSGAHVLEFLRYLDQFGKTKVHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGR 131
           L+L  CSGAHVLEFLRYLDQFGKTKVH   CPFFG PNPPAPC CPLRQAWGSLDALIGR
Sbjct: 71  LSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACPLRQAWGSLDALIGR 130

Query: 132 LRAAYEENGGRPEANPFGARAVRLYLREVRDFQAKARGVSYE-KKRKRP 179
           LRAA+EENGG PE NPFGARAVRLYLREVRD QAKARG+SYE KKRKRP
Sbjct: 131 LRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKRKRP 179

[Close]

BLAST of Tan0004557 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 239.2 bits (609), Expect = 2.7e-63
Identity = 113/144 (78.47%), Postives = 126/144 (87.50%), Query Frame = 0


Query: 36  PSSSSSAAATPSRYENQKRRDWNTFCQYLRNHRPPLALPMCSGAHVLEFLRYLDQFGKTK 95
           PS  SS  ATPSRYE+QKRRDWNTF QYL+NH+PPLAL  CSGAHV+EFL+YLDQFGKTK
Sbjct: 19  PSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTK 78

Query: 96  VHNQTCPFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGRPEANPFGARAVRLY 155
           VH   CP+FG   PP+PC CPL+QAWGSLDALIGRLRAAYEENGGRP++NPF ARAVR+Y
Sbjct: 79  VHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIY 138

Query: 156 LREVRDFQAKARGVSYE-KKRKRP 179
           LREVR+ QAKARG+ YE KKRKRP
Sbjct: 139 LREVRESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of Tan0004557 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NNI3	2.3e-70	88.65	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9M836	6.8e-67	71.82	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 2 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q7XDD0	3.4e-66	82.99	Protein G1-like5 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L5 PE=1 SV=1	[more]
O82268	9.8e-66	79.87	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
Q9LW68	9.8e-66	76.92	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]

BLAST of Tan0004557 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965962.1	8.5e-91	91.15	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita maxima]	[more]
XP_022938293.1	2.5e-90	90.63	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita moschata] >KAG7021182...	[more]
KAG6586335.1	5.5e-90	89.53	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, partial [Cucurbita argyrosperma subs...	[more]
XP_023538298.1	1.2e-89	90.10	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Cucurbita pepo subsp. pepo]	[more]
XP_038890681.1	3.6e-81	83.87	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Benincasa hispida]	[more]

BLAST of Tan0004557 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HLQ5	4.1e-91	91.15	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1FIH1	1.2e-90	90.63	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1CPQ1	5.0e-81	82.81	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Momordica charantia OX=3673 G...	[more]
A0A6J1KC51	6.6e-81	83.77	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1G4J5	6.6e-81	83.77	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of Tan0004557 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28490.1	1.6e-71	88.65	Protein of unknown function (DUF640)	[more]
AT3G04510.1	4.8e-68	71.82	Protein of unknown function (DUF640)	[more]
AT2G31160.1	7.0e-67	79.87	Protein of unknown function (DUF640)	[more]
AT3G23290.2	7.0e-67	76.92	Protein of unknown function (DUF640)	[more]
AT1G07090.1	2.7e-63	78.47	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 40..161 e-value: 1.0E-65 score: 219.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 48..175 score: 84.785599
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 167..191
None	No IPR available	PANTHER	PTHR31165:SF15	PROTEIN G1-LIKE5	coord: 1..186
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004557.1	Tan0004557.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus