Tan0004491 (gene) Snake gourd v1

Overview


Name	Tan0004491
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Replication protein A subunit
Location	LG06: 16914063 .. 16919191 (+)
RNA-Seq Expression	Tan0004491
Synteny	Tan0004491

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGACATGAATATGCTTATTGGTGAGCTCAAGCCTTTTCAAAGAGGATGGAGTGCTAAAGTCACTATCATAAAGAAATTTTCCATTCAAAAATTCAAGAACAAAAAGGAGATCCACTTAAAGTTTTAAAATTAATAGTTATTGACAAAGAGGTAAAAATTAGTATAGTTTTTTTTTCTAAATTTATTGTGTTGTTTGATTAATTTGGGGATAATGTTTCATATTTATCAATGCATGGAGAAAGTATTCAAATCACTTTGTTCAATGATGTTATTGAAAAATTTGGAGAAATTTTTCAAATGGGAAAAACGTATGTGATCAATGATGGCAACATCAAACCTATTTATATGAGATACATGAGCATTCATCCAAAATTTGAGATATCATTATCCAAAAACAATGACGTCAAAGAGCTTGAATGTAACGTCCGGTTAAAAAAAAAAAAGGAAAAAAAGGAAGTAGGTTAAAAAAAACAAAAAAAAAGAAGGGAGAAGAGAAAGCACCGCGCTCGGCCTCCCCCCCTCCCTCCCTCTCAACCTTCTCGTTTTCCTTCTTCTTCTCGCAGGGGGGAGCCGCCGGAGGAGCAACCGCCAGCCATCGTCCGCCGCCTCCCTCTTCCTCAAATTCTCTCTTTCTCTATGCCCCCCATTCGTCGGCCCTCTCTCTACTCTTCGACCACCCTCTCATTCGGCAAGCCGAGACCCACGCCGGATTCCGCCAGTCGTCGTCGTCGCGCGCCTTCGCCCTCTTGCCGGTTTCGTTCTCCCCTTTGGCAGTCGTTCCTCTCTGGCCAGTGACCTCGCAAAATCGCTCGTCGAAGCTCCTCGCCGGTGAGTTTTTCTCTAAACCGTTCAGATTTGGTTTGCTTGGTTCACTAAGTTTTCGGTCGGTGCTCATTGTTTGGAGTTTGGTTTTGGATAGATCGGGTCATGAGCATCTCGGATCTATGCCCCACGCACCACCACTCGCCGAAAAATTTGTCGTCGCCGCCGCTTGCCGGATTCCGCCATCGCCGCCACCGTCGGATAGGTATAATTGGTCGACTTCGTTTTCTCGATTCCATTTTAAGTCCCAATGCATTAGTTTGGTCATTTAAGTCAAATTAGTTCGTGTATGATTGTTAGAAGCGTGGTTTTAAGGTCTTTGTTTATTGAATAGTGGCTCGTGCGTGTTAAGAAAGCGCGTGGAACTCGGGATCGAACTCCCGAACACTAGCTATCGAGGTAAGTAGTCATTTAGAATTAAGCCTGATAAGTTATTGTTGCTCTGATTATGTGCGGCCCCTTGCGAATTGTGATAGTATGCTCGAATTTGTGTCTTACGATACGTTGTTGGTCGACGGGATTGTATGGGGTCGTTTGTGTTAAAAGGCCTAAAGGCATGAGACCAATGTGGAACTAGGGGCTTAATGTTTGGCGCTAACATGGCACCTTAAAAGTTTGTCTATGTTAGGGGTTGGTTGAGGTTGGATTATGTCGGCGATGGTTTGGAACTACACATACTTGATTAGTATGGGTGTGACGGGCACAGTGTAGTTGGCTAAACCGAATGGAGGATTTCTGTGTTGGGCTTAAGGTCTCCTAAGCGTGAGGCTATTCTTGTTTAAGGGTTCGAGGTTGCAACTAAAGCTTTGGTTATGGTGGTTTGGGCCAGACATGACCACTGGGTGCACGCCTAAAACTTCGACTTGTGTTTGATCTATTTGGAACGTTATAATTAACTTGTTTGGGCGTTAAAGGTGAGCCCTAGGCAACGCTAGTGACCAGTCGTTTCTTTGAAATTGTTTTAGGCGAGCTGGTGATTGACTTATCGAGGAAGTGGTTGTTTCGCGGATCCTCGAATGGATGTATGTTGCGAACTTGATCCAGTAAGCAAGCTCATAAGTGAGGGAGCTGGCTTGCACAGCTTGTGATTTAAAGCTTTGTGTTGTTGTGTATGTTAAAGGGGTTGGTTCCGACCGTGATTGAGTTCGCGCTCGTATGGTTGAGGATCATAATCGATATGCAACTTGTATTGCTTGCATGATTGTTAGTATGTATCTTCGATTATAATTTATTACTAAGTCAAGAGTATTGTGTCATGGAACCCCCGGGCTAGTAGTCCCTACCTTACGTCTTATTTAGGTGACGTTATCCTATAACCTTGTGCGGCGGGAAACTAGCATGGAGTATGTGTATTGATGATGTCTCATGGTGAGTCACAGAGTGTGTGACAACAGACCAGGGGCAATGGTGTCTTGTGGTGAGCCATGGTAGTCATGGCAACAGACCAAAGACGAAAATGCTTCGAGGTAAGTTATTATGAGTGTGGCAACATACTCAAAGTGAGACATATATTACGAGCGTCCTGCGGTGCACGTCTGGGCTATGTCAGAATGCTAGTTAAGGAGGTGTTTACCGACGTGAAGCAAGGAGCTAAGCAAACCTGTGTGGGCTTGGGGTAAAGCTAAGTCGGACGTCTAGCTGAATGTGGTCTGAAGTTGGATTTTGGGTACTTTGAGGTGTTGGCTAAAAGTGAAAACTTGGTTGAATTTGGGACCCTGGAGAATAGGTCGGAGATTTTAGGAATGTCTTGTTAGAATCTTAAATAACCTTGATGCGCATAACCCAACACTTACTAAACCCTGAGTTACGCCTGAGGGAGTGAGAACCTCTAGGTTGACGATATATGATAGGCTCGTGAGACTGAAGTGCGTCCCCGTTGAGATCAGGGAGTGGTTGCTTTCCATTATCCCGTGCTAGCATAGGGGCGATTCTCCATAGGGCGTGTTGGTTACGTACCTCACTACCCTATGCTAGTTTATTGTGTTGCGAGAGCCTGGGGTACGTCCCCGTCAGGGAGTGGTTGCTTTCCATTATCCCGTGCTGGCTTAGGGGCGATTCTCCATAGGGCGTGTAAGATACGTACCTACTCTACTCTATGCCAGTGTGTAGTGGCGTGAGAGTTGCTTTCTCTCATTGCATCGTCAATCAAAGTTCCAGGACCGAAGGTAGAGCTCGAGTTATTACCACAGGAGGGCTCAGGGTGAAGTGTGCTAAGTGTGAGACCTGTTTGGGGTTGAGTGAGTTTAGAAGGAGAGTTTTGTTTGATTGCATGTTAGGTTGTTTGTGCGTTAGTGGGCTTCTTACTGAGTATTTTTATACTCACGCGTCTACTTTGTTGTTTTTGGTTGCAGGTAAGAAACCCTGAGGCGGATGATGACGACGACGACCCGACGAGGCTGTGGGACCCTGTTTCCTTCTTATTTTTCCTTGGCTTAGAGTTTTCATTTGTCACTGTCATATTTAAGTTCCGCTTTATTTTTCTTTGGGGCGCGCAATCCTCTATTTCTCTTGTACTTTTAGTTGGTAAATTTTCGTTCTGGTTGACTTTTCGTTCTGTTGCGTGTTCGTTGTCCAAGAGAATGTACTTTGGAACTCTGGTTGTAGCCCCACCCATTCATTAATTGTAGTTTGGTGGGGGTTGGGCATCATTTGAAATTGTTTGAAGTGTTTTCTGCTTGTTAGATTCCAGGAAAAATTTTAGTTTTCTCCTTGTTATGTCGTTATGCTGCCGAAATTTTGGCGCGAACGGTATAGCAGAGTAACCTCCCTAGCGTAGATTCATCTAAATTTTTAGAGTGGTTACATTGAAGGAGAGACATTCTATCTTAAGAAGGATAACTTTTGCAGCTTTGAATTTGGGAACAATAATCGAACAAATACTCCCCTCACAGGTGCGTGCAATCTTGGTTATAACTTTTTTAAAAAAAAAAATATTTAATTAAAATTGAATAACCTTTTATTATAAATTTGATTAGAGATGTGATAGGTGGGGTTATACATGTAAAACCCCTAATTTGAAGAAAACTTCAGGATGACAATTATTCTAAAAAAATGGAAGTTCTACTTATGGACAATAAGTATGTTTCTCTATTTTACAATTCTTACCATTTGATTTTATTTTATTAGCCTAATATTATTGCCTCTCCTACTGTATACAGATTTAATACACTGAAATTGGCATTGTGGGACGATTTGGCAGAAAGTGAAGGGTAATATCTAGAAGAAAATGGTCAAGCAAAAAATGTGATTATAATCACTAATGTGAAAGCCTACTGAATTTGAAGGTATTTCTTACGTTTTAAAAATAATAACTTGTTGTTCTAATAAATATGTTAACTTATACTATTAACATAAAATTAAATTACATTGGAGGTGAGATATCTATATCATCCATTGTTACTAGCGTGATTGCCATAAATCCTCCATTGGAGAGCGTAGAATCATTGAAGTCCAAGCAAGTTTTTTTTTAAAATTAAAAATTACTTTTTATAATCAAATTGACTATTTTTTTTATACATAGTAGAAAATTAATTATTTGTAGTTTAAATATACTTTTATATTAATTTTATAGTTTTTGTACACTAATACTTTGTAGGATGGAAACTAAAGATAAAAAGTTGAATGATTTGATATATCCATCCAAAAAAATGATAGAAGCAAAAGAGGTTAACATGGATGCAGTTATATCAAAGGAAAAGTAAGTGATCTATACTGTTCTTTTATTGGAAGAATAGTAAATATACATAACAAAAATAATCCATGGTTTGAAAAATGTAATGCATGCAATAAAAGATTATATCCAATAGACTACAAGCCAACAACGTATTGTCAAAAATGTGAGAATAAAAATTCAACATTTTCACGAAAATACGTATTGAGAATGCTGGTATCAGATGGTGAGGAGGAAAGCTACATAACTCTTTTTTATGCTACGGATTATATAATTGGATGCAGTGCAACTGAATATTTCAATGATCTCAAGGTACAATGTTGAAGTTGAAATTTTTATTTTTTTAGAAAACAATAAATAAATAAAAAAAATAATGACTAATTTAATTCTGAATTTTGGAGGACATCCAAAAAGACACAAGTAAACATTTTAAAATTTGGTTGTGGCAAATGATAAAAAGTACTATTTCTTAGTCAAAATGGACAAAGCAGGAGAGTGATCTTGCACGTAAACAAATTGTTGTTCAAGAAATTTGCAGTGTCGTTTCCATGACTAGCAAAAAACACATAAAAGGTGAAGGGAAGAAAATGATAGAAATGCAAGAAAAGAATAAGCATGCCAAAATAAAATAA

mRNA sequence

ATGGCAGACATGAATATGCTTATTGGTGAGCTCAAGCCTTTTCAAAGAGGATGGAGTGCTAAAGTCACTATCATAAAGAAATTTTCCATTCAAAAATTCAAGAACAAAAAGGAGATCCACTTAAATATTCAAATCACTTTGTTCAATGATGTTATTGAAAAATTTGGAGAAATTTTTCAAATGGGAAAAACGTATGTGATCAATGATGGCAACATCAAACCTATTTATATGAGATACATGAGCATTCATCCAAAATTTGAGATATCATTATCCAAAAACAATGACGTCAAAGAGCTTGAATGTAACACATTCTATCTTAAGAAGGATAACTTTTGCAGCTTTGAATTTGGGAACAATAATCGAACAAATACTCCCCTCACAGGTGCAAAACTTCAGGATGACAATTATTCTAAAAAAATGGAAGTTCTACTTATGGACAATAAATTTAATACACTGAAATTGGCATTGTGGGACGATTTGGCAGAAAACTACAAGCCAACAACGTATTGTCAAAAATGTGAGAATAAAAATTCAACATTTTCACGAAAATACGTATTGAGAATGCTGGTATCAGATGGTGAGGAGGAAAGCTACATAACTCTTTTTTATGCTACGGATTATATAATTGGATGCAGTGCAACTGAATATTTCAATGATCTCAAGTCAAAATGGACAAAGCAGGAGAGTGATCTTGCACGTAAACAAATTGTTGTTCAAGAAATTTGCAGTGTCGTTTCCATGACTAGCAAAAAACACATAAAAGGTGAAGGGAAGAAAATGATAGAAATGCAAGAAAAGAATAAGCATGCCAAAATAAAATAA

Coding sequence (CDS)

ATGGCAGACATGAATATGCTTATTGGTGAGCTCAAGCCTTTTCAAAGAGGATGGAGTGCTAAAGTCACTATCATAAAGAAATTTTCCATTCAAAAATTCAAGAACAAAAAGGAGATCCACTTAAATATTCAAATCACTTTGTTCAATGATGTTATTGAAAAATTTGGAGAAATTTTTCAAATGGGAAAAACGTATGTGATCAATGATGGCAACATCAAACCTATTTATATGAGATACATGAGCATTCATCCAAAATTTGAGATATCATTATCCAAAAACAATGACGTCAAAGAGCTTGAATGTAACACATTCTATCTTAAGAAGGATAACTTTTGCAGCTTTGAATTTGGGAACAATAATCGAACAAATACTCCCCTCACAGGTGCAAAACTTCAGGATGACAATTATTCTAAAAAAATGGAAGTTCTACTTATGGACAATAAATTTAATACACTGAAATTGGCATTGTGGGACGATTTGGCAGAAAACTACAAGCCAACAACGTATTGTCAAAAATGTGAGAATAAAAATTCAACATTTTCACGAAAATACGTATTGAGAATGCTGGTATCAGATGGTGAGGAGGAAAGCTACATAACTCTTTTTTATGCTACGGATTATATAATTGGATGCAGTGCAACTGAATATTTCAATGATCTCAAGTCAAAATGGACAAAGCAGGAGAGTGATCTTGCACGTAAACAAATTGTTGTTCAAGAAATTTGCAGTGTCGTTTCCATGACTAGCAAAAAACACATAAAAGGTGAAGGGAAGAAAATGATAGAAATGCAAGAAAAGAATAAGCATGCCAAAATAAAATAA

Protein sequence

MADMNMLIGELKPFQRGWSAKVTIIKKFSIQKFKNKKEIHLNIQITLFNDVIEKFGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLKKDNFCSFEFGNNNRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLAENYKPTTYCQKCENKNSTFSRKYVLRMLVSDGEEESYITLFYATDYIIGCSATEYFNDLKSKWTKQESDLARKQIVVQEICSVVSMTSKKHIKGEGKKMIEMQEKNKHAKIK

Homology

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BLAST of Tan0004491 vs. ExPASy Swiss-Prot
Match: Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 1.2e-11
Identity = 46/178 (25.84%), Postives = 92/178 (51.69%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------EIHL------NIQITLFNDVIEKFGEI 70
           L P+Q  W  KV +  K +++ +KN +       + L       IQ T+FN+  +KF  +
Sbjct: 192 LNPYQGNWIIKVRVTSKGNLRTYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKKFYPM 251

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTF-------YLKKDNF 130
           F++GK Y I+ G+++    ++ ++H  +E++L++N  V+E E  TF       ++K D  
Sbjct: 252 FELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVEEAEGETFIPQIQYNFVKIDQL 311

Query: 131 CSFEFGNN-------NRTNTPLTGAKLQDDNYS-KKMEVLLMDNKFNTLKLALWDDLA 162
             +  G          ++ +P    + + DN +  K ++++ D+   T+ ++LW+DLA
Sbjct: 312 GPYVGGRELVDVIGVVQSVSPTLSVRRKIDNETIPKRDIVVADDSSKTVTISLWNDLA 369

[Close]

BLAST of Tan0004491 vs. ExPASy Swiss-Prot
Match: Q9FME0 (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=3702 GN=RPA1D PE=2 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-11
Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------------EIHLNIQITLFNDVIEKFGEI 70
           L P+Q  W+ KV +  K  ++ +KN +            E    IQ T+FND   KF + 
Sbjct: 187 LNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFFDR 246

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYL--KKDNFCSFE- 130
           FQ+GK Y I+ G++K    ++ ++   +E++L++N++V+E      ++   K NF   E 
Sbjct: 247 FQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEE 306

Query: 131 -------------FGNNNRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 162
                         G     +  ++  +  D+    K ++ L D    T+ ++LW+DLA
Sbjct: 307 LGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLA 365

[Close]

BLAST of Tan0004491 vs. ExPASy Swiss-Prot
Match: Q9SD82 (Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA1B PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.9e-09
Identity = 44/179 (24.58%), Postives = 82/179 (45.81%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------------EIHLNIQITLFNDVIEKFGEI 70
           L P+Q  W+ KV +  K  ++ +KN +            E    IQ T+FN    KF + 
Sbjct: 163 LNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDR 222

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYL--KKDNFCSFE- 130
           F+MGK Y I+ G++K    ++ ++   +E++L++N++V+E      +    K NF   + 
Sbjct: 223 FEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDE 282

Query: 131 -------------FGNNNRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 162
                         G     +  ++  +  D+    K ++ L D    T+ ++LW+DLA
Sbjct: 283 LGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLA 341

[Close]

BLAST of Tan0004491 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 29/101 (28.71%), Postives = 53/101 (52.48%), Query Frame = 0


Query: 8   IGELKPFQRGWSAKVTIIKKFSIQKFKNKK------EIHL------NIQITLFNDVIEKF 67
           I  L P+Q  W+ K  +  K  I+++ N K         L       I++T FN ++++F
Sbjct: 214 ISALNPYQGRWAIKARVTAKGDIRRYHNAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRF 273

Query: 68  GEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDV 97
            E+ ++GK YV++ GN++P    Y  ++ ++EI L   + V
Sbjct: 274 YEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTV 314

[Close]

BLAST of Tan0004491 vs. ExPASy Swiss-Prot
Match: Q9FHJ6 (Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=3702 GN=RPA1C PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 7.3e-06
Identity = 43/190 (22.63%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 8   IGELKPFQRGWSAKVTIIKKFSIQKFKNKK-EIHL-----------NIQITLFNDVIEKF 67
           I  L P+Q  W+ KV +  K  +++F N + E  L            I++T FND +++F
Sbjct: 302 IAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQF 361

Query: 68  GEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECN----TFYLKKDNF 127
            +   +G  Y+I+ GN+KP    +  +   +EI L   + ++  E +     ++    N 
Sbjct: 362 FDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCEDDGTIPRYHFHFRNI 421

Query: 128 CSFEFGNNNRTN---------TPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDL-- 171
              E   NN T          +P      ++    +K  + L D    ++++ +W +   
Sbjct: 422 GDIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCN 481

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BLAST of Tan0004491 vs. NCBI nr
Match: XP_022155232.1 (replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 1.0e-41
Identity = 95/182 (52.20%), Postives = 123/182 (67.58%), Query Frame = 0


Query: 4   MNMLIGELKPFQRGWSAKVTIIKKFSIQKFKNKKEIHLN-------------IQITLFND 63
           MNM+I +L+PFQ+GW+  VTI++KF IQ   N+K   L              IQ+ LFND
Sbjct: 1   MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND 60

Query: 64  VIEKFGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLKKDN 123
           +IEKFG++ + GKTY INDGNIKPI +RYM++H K EISLS+N+ VKE+E  TF+L K +
Sbjct: 61  LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVHSKIEISLSQNSKVKEIEGETFFLTKQD 120

Query: 124 FCSFEFGNNNRT---------NTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 164
           FC+FE   + ++           P+   K +D NYSKK EVLLMDNK NT+KL LWDDLA
Sbjct: 121 FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLMDNKLNTIKLTLWDDLA 180

[Close]

BLAST of Tan0004491 vs. NCBI nr
Match: ONK60194.1 (uncharacterized protein A4U43_C08F15380 [Asparagus officinalis])

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-15
Identity = 79/278 (28.42%), Postives = 137/278 (49.28%), Query Frame = 0


Query: 5   NMLIGELKPFQRGWSAKVTIIKKFSIQKFK----NKKEIHL------NIQITLFNDVIEK 64
           N+ I ELK +Q+ WS  V +++  +I  FK    NK+++ L       IQ  LFN +IEK
Sbjct: 23  NIAIRELKIYQKQWSINVRVLRN-TIDSFKNGEGNKQKLILIDEEGTLIQAILFNKLIEK 82

Query: 65  FGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLK-KDNFCS 124
           F  +    +TY I +G +KP  ++Y +I+P+ E++L+    ++E +      K K  F S
Sbjct: 83  FSGLLIKEETYTITNGEVKPPNLKYPTINPEKELTLTTKTIIRETKKIVSLEKLKPTFLS 142

Query: 125 FE----FGNN----NRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLAE--- 184
           F+    F +     +     +T   +  +  SK+ EV++M+ +F+ + + LW DLAE   
Sbjct: 143 FKDVSAFDDGIMPFDVVGFVITVKPIFTNPKSKRREVIIMNKEFDQISVTLWGDLAEIEG 202

Query: 185 -------NYKPTTYCQKCENKN--------STFSRKYVLRMLVSDGEEESYITLFYATDY 242
                  + KP         +               Y LR+ V+DG + +Y+TLF   + 
Sbjct: 203 SSLENLKDAKPVVALLSVVGRRYLGEFQLLQNHQLWYNLRLEVNDGTDTAYVTLFDEAEI 262

[Close]

BLAST of Tan0004491 vs. NCBI nr
Match: KAG5512925.1 (hypothetical protein RHGRI_038656 [Rhododendron griersonianum])

HSP 1 Score: 92.4 bits (228), Expect = 6.3e-15
Identity = 66/254 (25.98%), Postives = 118/254 (46.46%), Query Frame = 0


Query: 8   IGELKPFQRGWSAKVTIIKKFSIQKFKNKK------------EIHLNIQITLFNDVIEKF 67
           I +L+P+ R W+ KVTI+++  ++ +   K            E    IQ  LFNDVI  F
Sbjct: 198 INQLQPYDRNWTIKVTILRRGMVEPYSTSKGSGNMWKLILMDEQGTRIQAVLFNDVINLF 257

Query: 68  GEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVK----ELECNTFYLKKDNF 127
            + F    +Y I++G +KP+  +Y ++H + E+ L+ N  V+    E+  N+F  +   F
Sbjct: 258 EQTFLKENSYFISNGLVKPVNTQYANVHKEVEVMLTNNTRVEKAKLEITLNSFQYE---F 317

Query: 128 CSFEFGNNNRTNTPLTGAKLQDDNYS--------------KKMEVLLMDN--KFNTLKLA 187
            SFE   +   N  +  AKL +++Y               KKM             ++  
Sbjct: 318 TSFEDLQHAGQNDIV--AKLDEESYGGGNEGTTKCNPSQFKKMYCYFRGTIISIENMEKI 377

Query: 188 LWDDLAENYKPT------TYCQKCENKNSTFSRKYVLRMLVSDGEEESYITLFYATDYII 224
            ++  A+ +K          C KC + N   S +Y++++ V DG ++  +TLF A   ++
Sbjct: 378 WYEACAKCHKKVHVIETKAECHKCHSTNIEISPRYMMKLTVGDGVQQINVTLFDAAKRLV 437

[Close]

BLAST of Tan0004491 vs. NCBI nr
Match: ONK81712.1 (uncharacterized protein A4U43_C01F32110, partial [Asparagus officinalis])

HSP 1 Score: 79.3 bits (194), Expect = 5.6e-11
Identity = 57/177 (32.20%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 5   NMLIGELKPFQRGWSAKVTIIKKFSIQKFK----NKKEIHL------NIQITLFNDVIEK 64
           N+ I ELK +Q+ WS  V +++  +I  FK    NK+++ L       IQ  LFN +IEK
Sbjct: 13  NIAIRELKIYQKQWSINVRVLRN-TIDSFKNGEGNKQKLILIDEEGTLIQAILFNKLIEK 72

Query: 65  FGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLK-KDNFCS 124
           F  +   G+TY I +G +KP  ++Y +I+P+ E++L+    ++E +      K K  F S
Sbjct: 73  FSGLLIKGETYTITNGEVKPSNLKYPTINPEKELALTTKTIIRETKKIVSLEKLKPTFLS 132

Query: 125 FE----FGNN----NRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLAE 163
           F+    F N     +      T   +  +  SK+ EV++M+ +F+ + + LW DLAE
Sbjct: 133 FKDASAFDNGIMPFDVVGFVTTVKPIFTNPKSKRREVIIMNKEFDQISVTLWGDLAE 188

[Close]

BLAST of Tan0004491 vs. NCBI nr
Match: ONK55571.1 (uncharacterized protein A4U43_UnF1510 [Asparagus officinalis])

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-10
Identity = 53/177 (29.94%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 5   NMLIGELKPFQRGWSAKVTIIKKFSIQKFK----NKKEIHL------NIQITLFNDVIEK 64
           N++I ELK +Q+ WS  V +++  +I  FK    NK+++ L       IQ  L N +IEK
Sbjct: 13  NIVIRELKIYQKQWSINVRVLRN-TIDSFKNGEGNKQKLILIDEEGTLIQAILCNKLIEK 72

Query: 65  FGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLK-KDNFCS 124
           F ++   G+TY I +G +KP  ++Y +I+P+ E++L+    ++E +      K K  F S
Sbjct: 73  FSDLLIKGETYTITNGEVKPSNLKYPTINPEKELTLTTKTIIRETKKFVSLEKLKPKFLS 132

Query: 125 FEFGNN--------NRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLAE 163
           F+  +         +      T   +  +  SK+ E+++M+ +F+ + + LW DLAE
Sbjct: 133 FKDASGFDDGIIPFDVVGFVTTVKPIFSNPNSKRREIVIMNKEFDQILVTLWGDLAE 188

[Close]

BLAST of Tan0004491 vs. ExPASy TrEMBL
Match: A0A6J1DNS8 (replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia OX=3673 GN=LOC111022373 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 5.0e-42
Identity = 95/182 (52.20%), Postives = 123/182 (67.58%), Query Frame = 0


Query: 4   MNMLIGELKPFQRGWSAKVTIIKKFSIQKFKNKKEIHLN-------------IQITLFND 63
           MNM+I +L+PFQ+GW+  VTI++KF IQ   N+K   L              IQ+ LFND
Sbjct: 1   MNMVIDDLRPFQKGWTITVTIVRKFYIQNVTNRKGEPLRIMKFIVLDTKGVCIQVNLFND 60

Query: 64  VIEKFGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLKKDN 123
           +IEKFG++ + GKTY INDGNIKPI +RYM++H K EISLS+N+ VKE+E  TF+L K +
Sbjct: 61  LIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVHSKIEISLSQNSKVKEIEGETFFLTKQD 120

Query: 124 FCSFEFGNNNRT---------NTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 164
           FC+FE   + ++           P+   K +D NYSKK EVLLMDNK NT+KL LWDDLA
Sbjct: 121 FCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDGNYSKKREVLLMDNKLNTIKLTLWDDLA 180

[Close]

BLAST of Tan0004491 vs. ExPASy TrEMBL
Match: A0A5P1FUD9 (DUF223 domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=A4U43_C01F32110 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.7e-11
Identity = 57/177 (32.20%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 5   NMLIGELKPFQRGWSAKVTIIKKFSIQKFK----NKKEIHL------NIQITLFNDVIEK 64
           N+ I ELK +Q+ WS  V +++  +I  FK    NK+++ L       IQ  LFN +IEK
Sbjct: 13  NIAIRELKIYQKQWSINVRVLRN-TIDSFKNGEGNKQKLILIDEEGTLIQAILFNKLIEK 72

Query: 65  FGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLK-KDNFCS 124
           F  +   G+TY I +G +KP  ++Y +I+P+ E++L+    ++E +      K K  F S
Sbjct: 73  FSGLLIKGETYTITNGEVKPSNLKYPTINPEKELALTTKTIIRETKKIVSLEKLKPTFLS 132

Query: 125 FE----FGNN----NRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLAE 163
           F+    F N     +      T   +  +  SK+ EV++M+ +F+ + + LW DLAE
Sbjct: 133 FKDASAFDNGIMPFDVVGFVTTVKPIFTNPKSKRREVIIMNKEFDQISVTLWGDLAE 188

[Close]

BLAST of Tan0004491 vs. ExPASy TrEMBL
Match: A0A1R3L7I6 (DUF223 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_UnF1510 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.7e-10
Identity = 53/177 (29.94%), Postives = 95/177 (53.67%), Query Frame = 0


Query: 5   NMLIGELKPFQRGWSAKVTIIKKFSIQKFK----NKKEIHL------NIQITLFNDVIEK 64
           N++I ELK +Q+ WS  V +++  +I  FK    NK+++ L       IQ  L N +IEK
Sbjct: 13  NIVIRELKIYQKQWSINVRVLRN-TIDSFKNGEGNKQKLILIDEEGTLIQAILCNKLIEK 72

Query: 65  FGEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLK-KDNFCS 124
           F ++   G+TY I +G +KP  ++Y +I+P+ E++L+    ++E +      K K  F S
Sbjct: 73  FSDLLIKGETYTITNGEVKPSNLKYPTINPEKELTLTTKTIIRETKKFVSLEKLKPKFLS 132

Query: 125 FEFGNN--------NRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLAE 163
           F+  +         +      T   +  +  SK+ E+++M+ +F+ + + LW DLAE
Sbjct: 133 FKDASGFDDGIIPFDVVGFVTTVKPIFSNPNSKRREIVIMNKEFDQILVTLWGDLAE 188

[Close]

BLAST of Tan0004491 vs. ExPASy TrEMBL
Match: A0A5J9WJ31 (Replication protein A subunit OS=Eragrostis curvula OX=38414 GN=EJB05_07554 PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-09
Identity = 47/178 (26.40%), Postives = 89/178 (50.00%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------EIHL------NIQITLFNDVIEKFGEI 70
           L P+Q  W  KV +  K +++ +KN +       + L       IQ T+FN+  +KF  I
Sbjct: 228 LNPYQGNWVIKVRVTNKGNLRSYKNARGEGCVFNVELTDVDGTQIQATMFNEAAKKFYPI 287

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTF-------YLKKDNF 130
           F+MGK Y I+ G+++    ++ ++   +E++L++N  V+E E  TF       ++K D  
Sbjct: 288 FEMGKVYYISKGSLRIANKQFKTVQNDYELTLNENAVVEEAEGETFIPPVQYNFVKIDQL 347

Query: 131 CSFEFGNN--------NRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 162
            S+  G             +  L+  +  DD    K ++++ D+   T+ ++LW+DL+
Sbjct: 348 GSYVNGRELVDLVGVVQSVSPTLSVRRKLDDKMIPKRDIVVADDSGKTVTVSLWNDLS 405

[Close]

BLAST of Tan0004491 vs. ExPASy TrEMBL
Match: A0A2R6QH86 (Replication protein A subunit OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18343 PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-09
Identity = 46/182 (25.27%), Postives = 86/182 (47.25%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------------EIHLNIQITLFNDVIEKFGEI 70
           L P+Q  W+ KV +  K +++ +KN +            E    IQ T+FN+   KF + 
Sbjct: 184 LNPYQGNWTIKVRVTSKGNMRTYKNARGEGCVFNVELSDEDGTQIQATMFNEAARKFYDK 243

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYLKKDNFCSFEFGN 130
           FQ+GK Y I+ G +K    ++M++H  +E++L++N+DV+E      ++ +  F       
Sbjct: 244 FQLGKVYYISKGTLKVANKQFMTVHNDYEMTLNENSDVEEASNEATFIPETKFNFVPIDQ 303

Query: 131 -----------------NNRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 164
                             N + T     K+ ++   K+ ++ + D    T+ ++LW+DLA
Sbjct: 304 LGPYINSKELVDVIGVVQNVSPTMSIRRKINNETVPKR-DITIADETKKTVVVSLWNDLA 363

[Close]

BLAST of Tan0004491 vs. TAIR 10
Match: AT5G61000.1 (Replication factor-A protein 1-related )

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-12
Identity = 46/179 (25.70%), Postives = 84/179 (46.93%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------------EIHLNIQITLFNDVIEKFGEI 70
           L P+Q  W+ KV +  K  ++ +KN +            E    IQ T+FND   KF + 
Sbjct: 187 LNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMFNDAARKFFDR 246

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYL--KKDNFCSFE- 130
           FQ+GK Y I+ G++K    ++ ++   +E++L++N++V+E      ++   K NF   E 
Sbjct: 247 FQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASSEEMFIPETKFNFVPIEE 306

Query: 131 -------------FGNNNRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 162
                         G     +  ++  +  D+    K ++ L D    T+ ++LW+DLA
Sbjct: 307 LGLYVNQKELIDLIGVVQSVSPTMSIRRRTDNEMIPKRDITLADESRKTVVVSLWNDLA 365

[Close]

BLAST of Tan0004491 vs. TAIR 10
Match: AT5G08020.1 (RPA70-kDa subunit B )

HSP 1 Score: 64.7 bits (156), Expect = 1.3e-10
Identity = 44/179 (24.58%), Postives = 82/179 (45.81%), Query Frame = 0


Query: 11  LKPFQRGWSAKVTIIKKFSIQKFKNKK------------EIHLNIQITLFNDVIEKFGEI 70
           L P+Q  W+ KV +  K  ++ +KN +            E    IQ T+FN    KF + 
Sbjct: 163 LNPYQGSWTIKVRVTNKGVMRTYKNARGEGCVFNVELTDEEGTQIQATMFNAAARKFYDR 222

Query: 71  FQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECNTFYL--KKDNFCSFE- 130
           F+MGK Y I+ G++K    ++ ++   +E++L++N++V+E      +    K NF   + 
Sbjct: 223 FEMGKVYYISRGSLKLANKQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDE 282

Query: 131 -------------FGNNNRTNTPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDLA 162
                         G     +  ++  +  D+    K ++ L D    T+ ++LW+DLA
Sbjct: 283 LGTYVNQKDLIDVIGVVQSVSPTMSIRRKNDNEMIPKRDITLADETKKTVVVSLWNDLA 341

[Close]

BLAST of Tan0004491 vs. TAIR 10
Match: AT5G45400.1 (Replication factor-A protein 1-related )

HSP 1 Score: 52.8 bits (125), Expect = 5.2e-07
Identity = 43/190 (22.63%), Postives = 80/190 (42.11%), Query Frame = 0


Query: 8   IGELKPFQRGWSAKVTIIKKFSIQKFKNKK-EIHL-----------NIQITLFNDVIEKF 67
           I  L P+Q  W+ KV +  K  +++F N + E  L            I++T FND +++F
Sbjct: 302 IAALNPYQGRWTIKVRVTSKADLRRFNNPRGEGKLFSFDLLDADGGEIRVTCFNDAVDQF 361

Query: 68  GEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVKELECN----TFYLKKDNF 127
            +   +G  Y+I+ GN+KP    +  +   +EI L   + ++  E +     ++    N 
Sbjct: 362 FDKIVVGNVYLISRGNLKPAQKNFNHLPNDYEIHLDSASTIQPCEDDGTIPRYHFHFRNI 421

Query: 128 CSFEFGNNNRTN---------TPLTGAKLQDDNYSKKMEVLLMDNKFNTLKLALWDDL-- 171
              E   NN T          +P      ++    +K  + L D    ++++ +W +   
Sbjct: 422 GDIENMENNSTTDVIGIVSSISPTVAIMRKNLTEVQKRSLQLKDMSGRSVEVTMWGNFCN 481

[Close]

BLAST of Tan0004491 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06
Identity = 27/102 (26.47%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 8   IGELKPFQRGWSAKVTIIKKFSIQKFKNKK------EIHL------NIQITLFNDVIEKF 67
           I  L P+Q  W+ K  +  K  I+++ N K         L       I++T FN ++++F
Sbjct: 177 IAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRF 236

Query: 68  GEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVK 98
            ++ ++GK Y+I+ G++KP    +  +  ++EI L   + V+
Sbjct: 237 YDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVE 278

[Close]

BLAST of Tan0004491 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-06
Identity = 27/102 (26.47%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 8   IGELKPFQRGWSAKVTIIKKFSIQKFKNKK------EIHL------NIQITLFNDVIEKF 67
           I  L P+Q  W+ K  +  K  I+++ N K         L       I++T FN ++++F
Sbjct: 200 IAALNPYQGRWAIKARVTAKGDIRRYNNAKGDGKVFSFDLLDYDGGEIRVTCFNALVDRF 259

Query: 68  GEIFQMGKTYVINDGNIKPIYMRYMSIHPKFEISLSKNNDVK 98
            ++ ++GK Y+I+ G++KP    +  +  ++EI L   + V+
Sbjct: 260 YDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVE 301

The following BLAST results are available for this feature:

BLAST of Tan0004491 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q10Q08	1.2e-11	25.84	Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japoni...	[more]
Q9FME0	2.0e-11	25.70	Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana OX=37...	[more]
Q9SD82	1.9e-09	24.58	Replication protein A 70 kDa DNA-binding subunit B OS=Arabidopsis thaliana OX=37...	[more]
Q6YZ49	1.1e-06	28.71	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]
Q9FHJ6	7.3e-06	22.63	Replication protein A 70 kDa DNA-binding subunit C OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Tan0004491 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155232.1	1.0e-41	52.20	replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]	[more]
ONK60194.1	6.3e-15	28.42	uncharacterized protein A4U43_C08F15380 [Asparagus officinalis]	[more]
KAG5512925.1	6.3e-15	25.98	hypothetical protein RHGRI_038656 [Rhododendron griersonianum]	[more]
ONK81712.1	5.6e-11	32.20	uncharacterized protein A4U43_C01F32110, partial [Asparagus officinalis]	[more]
ONK55571.1	3.6e-10	29.94	uncharacterized protein A4U43_UnF1510 [Asparagus officinalis]	[more]

BLAST of Tan0004491 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNS8	5.0e-42	52.20	replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia O...	[more]
A0A5P1FUD9	2.7e-11	32.20	DUF223 domain-containing protein (Fragment) OS=Asparagus officinalis OX=4686 GN=...	[more]
A0A1R3L7I6	1.7e-10	29.94	DUF223 domain-containing protein OS=Asparagus officinalis OX=4686 GN=A4U43_UnF15...	[more]
A0A5J9WJ31	1.1e-09	26.40	Replication protein A subunit OS=Eragrostis curvula OX=38414 GN=EJB05_07554 PE=3...	[more]
A0A2R6QH86	1.5e-09	25.27	Replication protein A subunit OS=Actinidia chinensis var. chinensis OX=1590841 G...	[more]

BLAST of Tan0004491 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G61000.1	1.4e-12	25.70	Replication factor-A protein 1-related	[more]
AT5G08020.1	1.3e-10	24.58	RPA70-kDa subunit B	[more]
AT5G45400.1	5.2e-07	22.63	Replication factor-A protein 1-related	[more]
AT2G06510.2	1.2e-06	26.47	replication protein A 1A	[more]
AT2G06510.1	1.2e-06	26.47	replication protein A 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013955	Replication factor A, C-terminal	PFAM	PF08646	Rep_fac-A_C	coord: 166..243 e-value: 5.4E-7 score: 29.5
None	No IPR available	GENE3D	2.40.50.140		coord: 135..267 e-value: 1.3E-6 score: 29.8
None	No IPR available	GENE3D	2.40.50.140		coord: 6..100 e-value: 3.3E-12 score: 48.5
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 7..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004491.1	Tan0004491.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
molecular_function	GO:0003677	DNA binding