Tan0004466 (gene) Snake gourd v1

Overview


Name	Tan0004466
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Unknown protein
Location	LG06: 11430762 .. 11431213 (-)
RNA-Seq Expression	Tan0004466
Synteny	Tan0004466

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACAGCATTAACTCAAAAGGAAATCAAAAGACGAATCCCTAATGCGTCGAAATTTACAAACCGCCACAGTGATCTTCTCCCAGATTCCTCAGAAATTGCTTCAGAATTTCGTACTCGAGGCAATGGCACCTCCGCCATTTAAATCGGCCATTCTTCCTCATCACGCTTCTCATTTTCCTTCTCCAACGAAGCAAAGAGACGATGCGCGGCGGCGATATGAAGTTCGGTCTCACTTTTGCCCTAATGGCGGCGCTTCTGCTTCTGGTTGCGCTCGGACTCGCGATGGCGACAGCGAGGTCGATTGAACACTCCGCCGGTGAGGCGCTGTGGCCGCAGGATAGAGCGCCAGTTCCACCGTCTGGCCGGAATCCTTGCACTAACGTTCCCTTGCCTGGCGATGGACGGCACTGTCTCTGATGGATAGAGGCTCAGATCTGAGTTTCTTCTCTTTT

mRNA sequence

TACAGCATTAACTCAAAAGGAAATCAAAAGACGAATCCCTAATGCGTCGAAATTTACAAACCGCCACAGTGATCTTCTCCCAGATTCCTCAGAAATTGCTTCAGAATTTCGTACTCGAGGCAATGGCACCTCCGCCATTTAAATCGGCCATTCTTCCTCATCACGCTTCTCATTTTCCTTCTCCAACGAAGCAAAGAGACGATGCGCGGCGGCGATATGAAGTTCGGTCTCACTTTTGCCCTAATGGCGGCGCTTCTGCTTCTGGTTGCGCTCGGACTCGCGATGGCGACAGCGAGGTCGATTGAACACTCCGCCGGTGAGGCGCTGTGGCCGCAGGATAGAGCGCCAGTTCCACCGTCTGGCCGGAATCCTTGCACTAACGTTCCCTTGCCTGGCGATGGACGGCACTGTCTCTGATGGATAGAGGCTCAGATCTGAGTTTCTTCTCTTTT

Coding sequence (CDS)

ATGCGTCGAAATTTACAAACCGCCACAGTGATCTTCTCCCAGATTCCTCAGAAATTGCTTCAGAATTTCGTACTCGAGGCAATGGCACCTCCGCCATTTAAATCGGCCATTCTTCCTCATCACGCTTCTCATTTTCCTTCTCCAACGAAGCAAAGAGACGATGCGCGGCGGCGATATGAAGTTCGGTCTCACTTTTGCCCTAATGGCGGCGCTTCTGCTTCTGGTTGCGCTCGGACTCGCGATGGCGACAGCGAGGTCGATTGA

Protein sequence

MRRNLQTATVIFSQIPQKLLQNFVLEAMAPPPFKSAILPHHASHFPSPTKQRDDARRRYEVRSHFCPNGGASASGCARTRDGDSEVD

Homology

[Close]

BLAST of Tan0004466 vs. NCBI nr
Match: KGN44698.1 (hypothetical protein Csa_015514 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 5.9e-07
Identity = 54/103 (52.43%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 1   MRRNLQTATVIF------SQIPQKLLQNFVL--EAMAPPPFK----SAILPHHASHFPSP 60
           M RNLQT+  IF      S+I  KLL NF+L   AMA  PFK    S IL H+ASH PS 
Sbjct: 1   MLRNLQTSPHIFFSSSSSSKIHGKLLPNFILHRRAMAFSPFKSIPNSPILLHYASHSPSS 60

Query: 61  TKQRDD---ARRRYEVRSHFCPNGGASASGCARTRDG-DSEVD 88
            K RD+   A RR E+   FCPNG ASAS  A  RDG D E D
Sbjct: 61  PKLRDNTTHAPRRQELTDPFCPNGRASAS--AFDRDGHDGEAD 101

[Close]

BLAST of Tan0004466 vs. ExPASy TrEMBL
Match: A0A0A0K5D0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372920 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.9e-07
Identity = 54/103 (52.43%), Postives = 60/103 (58.25%), Query Frame = 0


Query: 1   MRRNLQTATVIF------SQIPQKLLQNFVL--EAMAPPPFK----SAILPHHASHFPSP 60
           M RNLQT+  IF      S+I  KLL NF+L   AMA  PFK    S IL H+ASH PS 
Sbjct: 1   MLRNLQTSPHIFFSSSSSSKIHGKLLPNFILHRRAMAFSPFKSIPNSPILLHYASHSPSS 60

Query: 61  TKQRDD---ARRRYEVRSHFCPNGGASASGCARTRDG-DSEVD 88
            K RD+   A RR E+   FCPNG ASAS  A  RDG D E D
Sbjct: 61  PKLRDNTTHAPRRQELTDPFCPNGRASAS--AFDRDGHDGEAD 101

The following BLAST results are available for this feature:

BLAST of Tan0004466 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004466 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44698.1	5.9e-07	52.43	hypothetical protein Csa_015514 [Cucumis sativus]	[more]

BLAST of Tan0004466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K5D0	2.9e-07	52.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G372920 PE=4 SV=1	[more]

BLAST of Tan0004466 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004466.1	Tan0004466.1	mRNA