Tan0004462 (gene) Snake gourd v1

Overview


Name	Tan0004462
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	S-protein homolog
Location	LG07: 72621266 .. 72621451 (+)
RNA-Seq Expression	Tan0004462
Synteny	Tan0004462

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGCAACGACCACAATCATGTCGCTTTAGAAGTGTTTTGGCCCGAAGCATTGGCTAACCAATGGCTTCGCTATAGATGTCGTGATAATGTTTGCTTTTGGTCGGCAAGAAACGATGGAATCTATATTTTTAATGTTCCTGAAAATAAGTTTGAGTTTGTTGTTAAGTGGTTGCCTGGTTGGTAG

mRNA sequence

ATGCGCAACGACCACAATCATGTCGCTTTAGAAGTGTTTTGGCCCGAAGCATTGGCTAACCAATGGCTTCGCTATAGATGTCGTGATAATGTTTGCTTTTGGTCGGCAAGAAACGATGGAATCTATATTTTTAATGTTCCTGAAAATAAGTTTGAGTTTGTTGTTAAGTGGTTGCCTGGTTGGTAG

Coding sequence (CDS)

ATGCGCAACGACCACAATCATGTCGCTTTAGAAGTGTTTTGGCCCGAAGCATTGGCTAACCAATGGCTTCGCTATAGATGTCGTGATAATGTTTGCTTTTGGTCGGCAAGAAACGATGGAATCTATATTTTTAATGTTCCTGAAAATAAGTTTGAGTTTGTTGTTAAGTGGTTGCCTGGTTGGTAG

Protein sequence

MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPGW

Homology

[Close]

BLAST of Tan0004462 vs. ExPASy Swiss-Prot
Match: Q2HQ46 (S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 3.6e-06
Identity = 21/61 (34.43%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M  D  H+ ++VFW + +    L +RC    C W+A+NDG+Y++N    +     KW  G
Sbjct: 95  MSKDDGHMNVKVFWDDVI----LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWKSG 151

Query: 61  W 62
           W
Sbjct: 155 W 151

[Close]

BLAST of Tan0004462 vs. ExPASy Swiss-Prot
Match: F4JLS0 (S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1)

HSP 1 Score: 50.4 bits (119), Expect = 8.1e-06
Identity = 20/61 (32.79%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M  D+ H+ + VFW + +    L +RC    C W+A+ DG+Y++N    +     KW  G
Sbjct: 95  MNKDNGHMNVNVFWDDVI----LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEVG 151

Query: 61  W 62
           W
Sbjct: 155 W 151

[Close]

BLAST of Tan0004462 vs. NCBI nr
Match: KAE8650840.1 (hypothetical protein Csa_017632 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M NDHNHV+LEVFWPEA +  +L YRCRDNVC+WSARNDGIYI+NVPENKFE   KWLP 
Sbjct: 89  MSNDHNHVSLEVFWPEAASKPYLSYRCRDNVCYWSARNDGIYIYNVPENKFELHTKWLPA 148

Query: 61  W 62
           +
Sbjct: 149 Y 149

[Close]

BLAST of Tan0004462 vs. NCBI nr
Match: XP_009372346.1 (PREDICTED: uncharacterized protein LOC103961515 [Pyrus x bretschneideri])

HSP 1 Score: 86.3 bits (212), Expect = 1.0e-13
Identity = 33/61 (54.10%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M NDH H + +VFWPE+  + WLRYRC    CFW A+ DGIY+  +PE++ EF +KW PG
Sbjct: 99  MHNDHQHASFKVFWPES-NHSWLRYRCNYKECFWIAKEDGIYLRVIPESRDEFQLKWEPG 158

Query: 61  W 62
           W
Sbjct: 159 W 158

[Close]

BLAST of Tan0004462 vs. NCBI nr
Match: XP_028959329.1 (S-protein homolog 1-like [Malus domestica])

HSP 1 Score: 80.5 bits (197), Expect = 5.6e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M NDH + + +VFWPE+  + WLRYRC    CFW A++DGIY+  + E++ EF +KW PG
Sbjct: 47  MHNDHQYASFKVFWPES-NHSWLRYRCNYKECFWIAKDDGIYLRVILESRDEFQLKWEPG 106

Query: 61  W 62
           W
Sbjct: 107 W 106

[Close]

BLAST of Tan0004462 vs. NCBI nr
Match: TQD95938.1 (hypothetical protein C1H46_018425 [Malus baccata])

HSP 1 Score: 80.5 bits (197), Expect = 5.6e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M NDH + + +VFWPE+  + WLRYRC    CFW A++DGIY+  + E++ EF +KW PG
Sbjct: 47  MHNDHQYASFKVFWPES-NHSWLRYRCNYKECFWIAKDDGIYLRVILESRDEFQLKWEPG 106

Query: 61  W 62
           W
Sbjct: 107 W 106

[Close]

BLAST of Tan0004462 vs. NCBI nr
Match: TQD95937.1 (hypothetical protein C1H46_018424 [Malus baccata])

HSP 1 Score: 80.1 bits (196), Expect = 7.3e-12
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 2   RNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPGW 61
           R DH H A +V+W E+  N WLRYRC    CFW A++DG YI  +PE + E + KW PGW
Sbjct: 93  RTDHEHTAFDVYWEESTHN-WLRYRCNYKECFWIAKDDGFYIRVIPEKRDELIHKWEPGW 151

[Close]

BLAST of Tan0004462 vs. ExPASy TrEMBL
Match: A0A0A0L8P9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623980 PE=3 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.4e-23
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 0


Query: 1  MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
          M NDHNHV+LEVFWPEA +  +L YRCRDNVC+WSARNDGIYI+NVPENKFE   KWLPG
Sbjct: 1  MSNDHNHVSLEVFWPEAASKPYLSYRCRDNVCYWSARNDGIYIYNVPENKFELHTKWLPG 60

[Close]

BLAST of Tan0004462 vs. ExPASy TrEMBL
Match: A0A540MB75 (S-protein homolog OS=Malus baccata OX=106549 GN=C1H46_018425 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.7e-12
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M NDH + + +VFWPE+  + WLRYRC    CFW A++DGIY+  + E++ EF +KW PG
Sbjct: 47  MHNDHQYASFKVFWPES-NHSWLRYRCNYKECFWIAKDDGIYLRVILESRDEFQLKWEPG 106

Query: 61  W 62
           W
Sbjct: 107 W 106

[Close]

BLAST of Tan0004462 vs. ExPASy TrEMBL
Match: A0A540MB18 (S-protein homolog OS=Malus baccata OX=106549 GN=C1H46_018424 PE=3 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.5e-12
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 2   RNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPGW 61
           R DH H A +V+W E+  N WLRYRC    CFW A++DG YI  +PE + E + KW PGW
Sbjct: 93  RTDHEHTAFDVYWEESTHN-WLRYRCNYKECFWIAKDDGFYIRVIPEKRDELIHKWEPGW 151

[Close]

BLAST of Tan0004462 vs. ExPASy TrEMBL
Match: A0A5N5INF0 (S-protein homolog OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_027028 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-12
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 2   RNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPGW 61
           R DH H A +V+W E+  N WLRYRC    CFW A++DG YI  +PE + E + KW PGW
Sbjct: 93  RTDHEHTAFDVYWEESKHN-WLRYRCNYKECFWIAKDDGFYIRIIPEKRDELIHKWEPGW 151

[Close]

BLAST of Tan0004462 vs. ExPASy TrEMBL
Match: A0A498JWH5 (S-protein homolog OS=Malus domestica OX=3750 GN=DVH24_010449 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.6e-12
Identity = 31/60 (51.67%), Postives = 39/60 (65.00%), Query Frame = 0


Query: 2   RNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPGW 61
           R DH H A +V+W E+  N WLRYRC    CFW A++DG YI  +PE + E + KW PGW
Sbjct: 135 RTDHEHTAFDVYWEESKHN-WLRYRCNYKECFWIAKDDGFYIRVIPEKRDELIHKWEPGW 193

[Close]

BLAST of Tan0004462 vs. TAIR 10
Match: AT4G29035.1 (Plant self-incompatibility protein S1 family )

HSP 1 Score: 51.6 bits (122), Expect = 2.6e-07
Identity = 21/61 (34.43%), Postives = 33/61 (54.10%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M  D  H+ ++VFW + +    L +RC    C W+A+NDG+Y++N    +     KW  G
Sbjct: 95  MSKDDGHMNVKVFWDDVI----LFHRCDWKNCVWTAKNDGLYLWNSAIGEDVLSEKWKSG 151

Query: 61  W 62
           W
Sbjct: 155 W 151

[Close]

BLAST of Tan0004462 vs. TAIR 10
Match: AT4G16295.1 (S-protein homologue 1 )

HSP 1 Score: 50.4 bits (119), Expect = 5.8e-07
Identity = 20/61 (32.79%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 1   MRNDHNHVALEVFWPEALANQWLRYRCRDNVCFWSARNDGIYIFNVPENKFEFVVKWLPG 60
           M  D+ H+ + VFW + +    L +RC    C W+A+ DG+Y++N    +     KW  G
Sbjct: 95  MNKDNGHMNVNVFWDDVI----LFHRCGWKNCIWTAKTDGLYLWNSASGEDVLSRKWEVG 151

Query: 61  W 62
           W
Sbjct: 155 W 151

The following BLAST results are available for this feature:

BLAST of Tan0004462 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2HQ46	3.6e-06	34.43	S-protein homolog 74 OS=Arabidopsis thaliana OX=3702 GN=SPH74 PE=2 SV=1	[more]
F4JLS0	8.1e-06	32.79	S-protein homolog 1 OS=Arabidopsis thaliana OX=3702 GN=SPH1 PE=2 SV=1	[more]

BLAST of Tan0004462 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8650840.1	2.7e-22	75.41	hypothetical protein Csa_017632 [Cucumis sativus]	[more]
XP_009372346.1	1.0e-13	54.10	PREDICTED: uncharacterized protein LOC103961515 [Pyrus x bretschneideri]	[more]
XP_028959329.1	5.6e-12	50.82	S-protein homolog 1-like [Malus domestica]	[more]
TQD95938.1	5.6e-12	50.82	hypothetical protein C1H46_018425 [Malus baccata]	[more]
TQD95937.1	7.3e-12	51.67	hypothetical protein C1H46_018424 [Malus baccata]	[more]

BLAST of Tan0004462 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8P9	3.4e-23	78.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G623980 PE=3 SV=1	[more]
A0A540MB75	2.7e-12	50.82	S-protein homolog OS=Malus baccata OX=106549 GN=C1H46_018425 PE=3 SV=1	[more]
A0A540MB18	3.5e-12	51.67	S-protein homolog OS=Malus baccata OX=106549 GN=C1H46_018424 PE=3 SV=1	[more]
A0A5N5INF0	4.6e-12	51.67	S-protein homolog OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_0270...	[more]
A0A498JWH5	4.6e-12	51.67	S-protein homolog OS=Malus domestica OX=3750 GN=DVH24_010449 PE=3 SV=1	[more]

BLAST of Tan0004462 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29035.1	2.6e-07	34.43	Plant self-incompatibility protein S1 family	[more]
AT4G16295.1	5.8e-07	32.79	S-protein homologue 1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010264	Plant self-incompatibility S1	PFAM	PF05938	Self-incomp_S1	coord: 9..57 e-value: 8.1E-6 score: 26.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004462.1	Tan0004462.1	mRNA