Tan0004451 (gene) Snake gourd v1

Overview
NameTan0004451
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionCCHC-type domain-containing protein
LocationLG04: 36612767 .. 36613288 (+)
RNA-Seq ExpressionTan0004451
SyntenyTan0004451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACCCTAAAAGAAGAGGACAAGATTTCTGGTCTTAGGTTTACACATCAGTCATTTTGGTTTGAAATTCATGATACCCAAATGAATTACATGACTGTAGAGATGGCTAAATTATTGGGAAAAGAAGTTGGATTGGTAGAGGAAGTCGATTGGAATGGGGAAGATAAGTGGTTAGGACCCTTTTTACGTATTCGAGTACTGTTAAACATTACGATCCCGTTGATGAAAGAGTTGAAGCTAAAAACTGCATATGTTAAGGAGATTTGGTGTCCTATTAGATATGAAAAGTTATCGGATTATTGTTTCAATTGTGGAATCATTGGTCACTCAATCAAGGAATCCCGAGTTCATTCGATGAGGTTAGTGAAGTCAAACAGTTGGAGTATGGAGATAGGATTAGAGTTATGGTTATCAAGAAAAACCTTAATGAGAATGATGATGATTACTTATCTAGAGTGGGTGGTCAAGGAAGAAGCAATAAAGAAAGAGGAGGATTTAGGGGAAGGGGTGGTATACTAG

mRNA sequence

ATGAAAACCCTAAAAGAAGAGGACAAGATTTCTGGTCTTAGGTTTACACATCAGTCATTTTGGTTTGAAATTCATGATACCCAAATGAATTACATGACTGTAGAGATGGCTAAATTATTGGGAAAAGAAGTTGGATTGGTAGAGGAAGTCGATTGGAATGGGGAAGATAAGTGGTTAGGACCCTTTTTACGTATTCGAGTACTGTTAAACATTACGATCCCGTTGATGAAAGAGTTGAAGCTAAAAACTGCATATGTTAAGGAGATTTGGTGTCCTATTAGATATGAAAAGTTATCGGATTATTGTTTCAATTGTGGAATCATTGGTCACTCAATCAAGGAATCCCGAGTTCATTCGATGAGGTTAGTGAAGTCAAACAGTTGGAGTATGGAGATAGGATTAGAGTTATGGTTATCAAGAAAAACCTTAATGAGAATGATGATGATTACTTATCTAGAGTGGGTGGTCAAGGAAGAAGCAATAAAGAAAGAGGAGGATTTAGGGGAAGGGGTGGTATACTAG

Coding sequence (CDS)

ATGAAAACCCTAAAAGAAGAGGACAAGATTTCTGGTCTTAGGTTTACACATCAGTCATTTTGGTTTGAAATTCATGATACCCAAATGAATTACATGACTGTAGAGATGGCTAAATTATTGGGAAAAGAAGTTGGATTGGTAGAGGAAGTCGATTGGAATGGGGAAGATAAGTGGTTAGGACCCTTTTTACGTATTCGAGTACTGTTAAACATTACGATCCCGTTGATGAAAGAGTTGAAGCTAAAAACTGCATATGTTAAGGAGATTTGGTGTCCTATTAGATATGAAAAGTTATCGGATTATTGTTTCAATTGTGGAATCATTGGTCACTCAATCAAGGAATCCCGAGTTCATTCGATGAGGTTAGTGAAGTCAAACAGTTGGAGTATGGAGATAGGATTAGAGTTATGGTTATCAAGAAAAACCTTAATGAGAATGATGATGATTACTTATCTAGAGTGGGTGGTCAAGGAAGAAGCAATAAAGAAAGAGGAGGATTTAGGGGAAGGGGTGGTATACTAG

Protein sequence

MKTLKEEDKISGLRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNITIPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRVHSMRLVKSNSWSMEIGLELWLSRKTLMRMMMITYLEWVVKEEAIKKEEDLGEGVVY
Homology
BLAST of Tan0004451 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 118.2 bits (295), Expect = 6.8e-23
Identity = 51/115 (44.35%), Postives = 80/115 (69.57%), Query Frame = 0

Query: 13  LRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNIT 72
           + F   +FW +IH+     ++ EMA +LG ++G VEE++ +G D W GPF+R+RV ++++
Sbjct: 118 MNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVS 177

Query: 73  IPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRVHSMRLVKSNS 128
            PL + +KLK +  K+IWCP+RYEKL D+C+ CG IGHS +E    S ++V +NS
Sbjct: 178 KPLRRGIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRS-KVVTTNS 231

BLAST of Tan0004451 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-20
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 19  SFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNITIPLMKE 78
           +FW +IH      MT +MAK LG  +G VEEVD      W+ PFL +RV +N+  PL + 
Sbjct: 124 AFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPLRRG 183

Query: 79  LKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKE 115
           LK+KT+  K+IWCP+RYE+L D+C+ CG +GHSI+E
Sbjct: 184 LKVKTSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

BLAST of Tan0004451 vs. NCBI nr
Match: XP_015380691.1 (uncharacterized protein LOC107174364 [Citrus sinensis])

HSP 1 Score: 95.9 bits (237), Expect = 3.6e-16
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 0

Query: 15  FTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNITIP 74
           FTH +FW +I +  +  M  E+ + LG  +G VEE++ +   + LG F RIRVL+NIT+P
Sbjct: 100 FTHTAFWIQIRNVPIACMEKELIQELGGMIGAVEEIETDENGECLGEFARIRVLINITLP 159

Query: 75  LMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKE 115
           L K L LK     +I  P+ YE+L D+C+ CGIIGH  KE
Sbjct: 160 LKKILFLKQEGESDIQMPVVYERLPDFCYCCGIIGHQYKE 199

BLAST of Tan0004451 vs. NCBI nr
Match: XP_006484927.1 (uncharacterized protein LOC102626623 [Citrus sinensis])

HSP 1 Score: 91.3 bits (225), Expect = 9.0e-15
Identity = 42/100 (42.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query: 15  FTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNITIP 74
           FTH SFW +IH   +  M     + LG+++G VEEV+ + E + +GPF R+R+ ++IT P
Sbjct: 122 FTHTSFWVQIHGMPIKCMVKGTIEKLGEKIGQVEEVETDEEGECIGPFARVRISVDITKP 181

Query: 75  LMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKE 115
           L + L LK    ++I   I+Y++L D+CF CG+IGH  +E
Sbjct: 182 LKRILILKQEGEEDIVMLIKYDRLPDFCFCCGLIGHQFRE 221

BLAST of Tan0004451 vs. NCBI nr
Match: KAG5547197.1 (hypothetical protein RHGRI_013014 [Rhododendron griersonianum])

HSP 1 Score: 90.5 bits (223), Expect = 1.5e-14
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 0

Query: 11  SGLRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLN 70
           S L F+   FW +IH   + ++  +    + K +G V  V+  GE   L  FLR+R+ ++
Sbjct: 287 SDLDFSFSPFWIQIHGLPLGFLNPKAGMEIAKSLGEVITVEEPGERGKLANFLRVRIWVD 346

Query: 71  ITIPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRVHSMRLVKSNSWSM 130
           IT PL K   L+ A  ++IW   +YE+LSD+C+ CGI+GHS+ + +  S  + K   WS 
Sbjct: 347 ITKPLKKGFFLRRAKEEDIWISFKYERLSDFCYGCGIVGHSVNDCKEKSSLVAK--KWSF 405

Query: 131 E 132
           +
Sbjct: 407 D 405

BLAST of Tan0004451 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 3.3e-23
Identity = 51/115 (44.35%), Postives = 80/115 (69.57%), Query Frame = 0

Query: 13  LRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNIT 72
           + F   +FW +IH+     ++ EMA +LG ++G VEE++ +G D W GPF+R+RV ++++
Sbjct: 118 MNFNFCAFWIQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVS 177

Query: 73  IPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRVHSMRLVKSNS 128
            PL + +KLK +  K+IWCP+RYEKL D+C+ CG IGHS +E    S ++V +NS
Sbjct: 178 KPLRRGIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQRS-KVVTTNS 231

BLAST of Tan0004451 vs. ExPASy TrEMBL
Match: A0A6J1DVS4 (uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023555 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.3e-21
Identity = 48/96 (50.00%), Postives = 66/96 (68.75%), Query Frame = 0

Query: 19  SFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNITIPLMKE 78
           +FW +IH      MT +MAK LG  +G VEEVD      W+ PFL +RV +N+  PL + 
Sbjct: 124 AFWVQIHYITFECMTKDMAKFLGARLGEVEEVDGMSSYDWVRPFLWVRVKINVLKPLRRG 183

Query: 79  LKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKE 115
           LK+KT+  K+IWCP+RYE+L D+C+ CG +GHSI+E
Sbjct: 184 LKVKTSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

BLAST of Tan0004451 vs. ExPASy TrEMBL
Match: A0A2N9E949 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.6e-17
Identity = 40/117 (34.19%), Postives = 73/117 (62.39%), Query Frame = 0

Query: 1   MKTLKEEDKISGLRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLG 60
           +K    + K+ G++ T  SFW +IH+     M  E A  +G  +G++EE+D   +    G
Sbjct: 49  LKLFDGDQKVQGMQLTEASFWIQIHELPFKGMNEETATSVGNALGVLEEIDIPEDGITWG 108

Query: 61  PFLRIRVLLNITIPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRV 118
            F+R++V +++++PL++  ++K    + IW  ++YEKL  +C+NCGI+GHS +E R+
Sbjct: 109 EFMRVQVRIDVSMPLLRRQRVKLGKEESIWVTLKYEKLPTFCYNCGILGHSERECRL 165

BLAST of Tan0004451 vs. ExPASy TrEMBL
Match: A0A2N9G3M9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS21832 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-15
Identity = 37/105 (35.24%), Postives = 67/105 (63.81%), Query Frame = 0

Query: 13  LRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNIT 72
           ++ T  SFW +IH+     M  E A  +G  +G++EE+D   +    G F+R++V ++++
Sbjct: 1   MQLTEASFWIQIHELPFKGMNEETATSVGNALGVLEEIDIPEDGITWGEFMRVQVRIDVS 60

Query: 73  IPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRV 118
           +PL++  ++K    + IW  ++YEKL  +C+NCGI+GHS +E R+
Sbjct: 61  MPLLRRQRVKLGKEESIWVTLKYEKLPTFCYNCGILGHSERECRL 105

BLAST of Tan0004451 vs. ExPASy TrEMBL
Match: A0A6A4LZN0 (CCHC-type domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_06540 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 7.4e-15
Identity = 43/121 (35.54%), Postives = 69/121 (57.02%), Query Frame = 0

Query: 11  SGLRFTHQSFWFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLN 70
           S L F+   FW +IH   + ++  +    + K +G V  V+  GE   L  FLR+R+ ++
Sbjct: 101 SDLDFSFSPFWIQIHGLPLGFLNPKAGMEIAKSLGEVITVEEPGERGKLANFLRVRIWVD 160

Query: 71  ITIPLMKELKLKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSIKESRVHSMRLVKSNSWSM 130
           IT PL K   L+ A  ++IW   +YE+LSD+C+ CGI+GHS+ + +  S  + K   WS 
Sbjct: 161 ITKPLKKGFFLRRAKEEDIWISFKYERLSDFCYGCGIVGHSVNDCKEKSSLVAK--KWSF 219

Query: 131 E 132
           +
Sbjct: 221 D 219

BLAST of Tan0004451 vs. TAIR 10
Match: AT5G36228.1 (nucleic acid binding;zinc ion binding )

HSP 1 Score: 45.8 bits (107), Expect = 4.0e-05
Identity = 23/92 (25.00%), Postives = 43/92 (46.74%), Query Frame = 0

Query: 21  WFEIHDTQMNYMTVEMAKLLGKEVGLVEEVDWNGEDKWLGPFLRIRVLLNITIPLMKELK 80
           W  I    + Y++    +++   +G V  +D+N E      F+R++V ++ T PL    +
Sbjct: 124 WVHIRGIPLPYVSERTVEIIASTLGEVVAMDFNEETTSQITFIRVKVRMDFTEPLRFFRR 183

Query: 81  LKTAYVKEIWCPIRYEKLSDYCFNCGIIGHSI 113
           ++ A  +       YEKL   C NC  + H +
Sbjct: 184 VRFASRERAMIGFEYEKLQRVCTNCCRVNHQV 215

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022149484.16.8e-2344.35uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022156711.11.1e-2050.00uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_015380691.13.6e-1646.00uncharacterized protein LOC107174364 [Citrus sinensis][more]
XP_006484927.19.0e-1542.00uncharacterized protein LOC102626623 [Citrus sinensis][more]
KAG5547197.11.5e-1435.54hypothetical protein RHGRI_013014 [Rhododendron griersonianum][more]
Match NameE-valueIdentityDescription
A0A6J1D7653.3e-2344.35uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DVS45.3e-2150.00uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A2N9E9491.6e-1734.19CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS3389... [more]
A0A2N9G3M93.3e-1535.24CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS2183... [more]
A0A6A4LZN07.4e-1535.54CCHC-type domain-containing protein (Fragment) OS=Rhododendron williamsianum OX=... [more]
Match NameE-valueIdentityDescription
AT5G36228.14.0e-0525.00nucleic acid binding;zinc ion binding [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 70..114
e-value: 1.5E-10
score: 40.6
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 2..113
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 2..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0004451.1Tan0004451.1mRNA