Tan0004406 (gene) Snake gourd v1

Overview
NameTan0004406
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG03: 79582348 .. 79583274 (+)
RNA-Seq ExpressionTan0004406
SyntenyTan0004406
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACAGACATAGAAGAGAACAGTGAGGATTCGGACGCAACAATTGACGAACTCATGAAAGAAGAAGAAGAAGAAATCGGCTATCCATTGTGCGAATTGGCACTTGAATCAAATCGAGAATCCGCGAACGCGGCCGAAGAACACAAAAAAGAACGAGAAGATCCGCAAGATCTCGAAAAAGAAAAAGAAAAAGACGATCGCGGAATAAACGTGGAAGATCGGATGCCATACACGACGAGAATGGAAGAGCTGAAAGACGTATTACACGAATTATACAATTTGAAGAAAGTTTTTTTGAAGAATAAACTCAAACCATGGAATCGCTCAAATCTTGCAGAGTTCGAAGATCCGAAGATGAAGGAAAGAGAAAAGAAAATGAAAGAAGGACGTCTACTGATTAAGGATGTGAGCAATAACGATGAGAAAAAAAAGTGCGAAGAAGAATCCAGTTCCAGTAGAAAAGGAAAAGAAAAAATATACGAACCTGAACAAATTTACGATCCTCTGAAATTAATCCGCGATATAATATATGGATTCTGTGATTACATTGAGAACATAAATGAGATGGCGAAGCAGAGGGTGAAAGTTGAAATGGACTGGAGTGCTCATTTTGAAAATGGCGTCGAAGTGATGAAGAAATTGACTGAAAAGCTGAGGCAATTGAACGAGGAAATGCAACGGATGAAGAAGAGGAAGGATGAGAGGGAGAATTATGTAAAAATTCATGAAATGTTGTCAAAAATGGAGGAGATTAATGCAGTTTTGGATAGCTCTCCGAAAATTGAGATTGTTTCTGAGAGAGACTGTACGGAATTAGAATTGAAGATTTGTCAAAGTGAGCTGAGACTGTGCAAGAACCAATTGCGTGATTTGTTGTGGGGAGTTGTAAGATTAAAGCAACAACGCGATAAAATCTCCCAGGTTTAA

mRNA sequence

ATGACAGACATAGAAGAGAACAGTGAGGATTCGGACGCAACAATTGACGAACTCATGAAAGAAGAAGAAGAAGAAATCGGCTATCCATTGTGCGAATTGGCACTTGAATCAAATCGAGAATCCGCGAACGCGGCCGAAGAACACAAAAAAGAACGAGAAGATCCGCAAGATCTCGAAAAAGAAAAAGAAAAAGACGATCGCGGAATAAACGTGGAAGATCGGATGCCATACACGACGAGAATGGAAGAGCTGAAAGACGTATTACACGAATTATACAATTTGAAGAAAGTTTTTTTGAAGAATAAACTCAAACCATGGAATCGCTCAAATCTTGCAGAGTTCGAAGATCCGAAGATGAAGGAAAGAGAAAAGAAAATGAAAGAAGGACGTCTACTGATTAAGGATGTGAGCAATAACGATGAGAAAAAAAAGTGCGAAGAAGAATCCAGTTCCAGTAGAAAAGGAAAAGAAAAAATATACGAACCTGAACAAATTTACGATCCTCTGAAATTAATCCGCGATATAATATATGGATTCTGTGATTACATTGAGAACATAAATGAGATGGCGAAGCAGAGGGTGAAAGTTGAAATGGACTGGAGTGCTCATTTTGAAAATGGCGTCGAAGTGATGAAGAAATTGACTGAAAAGCTGAGGCAATTGAACGAGGAAATGCAACGGATGAAGAAGAGGAAGGATGAGAGGGAGAATTATGTAAAAATTCATGAAATGTTGTCAAAAATGGAGGAGATTAATGCAGTTTTGGATAGCTCTCCGAAAATTGAGATTGTTTCTGAGAGAGACTGTACGGAATTAGAATTGAAGATTTGTCAAAGTGAGCTGAGACTGTGCAAGAACCAATTGCGTGATTTGTTGTGGGGAGTTGTAAGATTAAAGCAACAACGCGATAAAATCTCCCAGGTTTAA

Coding sequence (CDS)

ATGACAGACATAGAAGAGAACAGTGAGGATTCGGACGCAACAATTGACGAACTCATGAAAGAAGAAGAAGAAGAAATCGGCTATCCATTGTGCGAATTGGCACTTGAATCAAATCGAGAATCCGCGAACGCGGCCGAAGAACACAAAAAAGAACGAGAAGATCCGCAAGATCTCGAAAAAGAAAAAGAAAAAGACGATCGCGGAATAAACGTGGAAGATCGGATGCCATACACGACGAGAATGGAAGAGCTGAAAGACGTATTACACGAATTATACAATTTGAAGAAAGTTTTTTTGAAGAATAAACTCAAACCATGGAATCGCTCAAATCTTGCAGAGTTCGAAGATCCGAAGATGAAGGAAAGAGAAAAGAAAATGAAAGAAGGACGTCTACTGATTAAGGATGTGAGCAATAACGATGAGAAAAAAAAGTGCGAAGAAGAATCCAGTTCCAGTAGAAAAGGAAAAGAAAAAATATACGAACCTGAACAAATTTACGATCCTCTGAAATTAATCCGCGATATAATATATGGATTCTGTGATTACATTGAGAACATAAATGAGATGGCGAAGCAGAGGGTGAAAGTTGAAATGGACTGGAGTGCTCATTTTGAAAATGGCGTCGAAGTGATGAAGAAATTGACTGAAAAGCTGAGGCAATTGAACGAGGAAATGCAACGGATGAAGAAGAGGAAGGATGAGAGGGAGAATTATGTAAAAATTCATGAAATGTTGTCAAAAATGGAGGAGATTAATGCAGTTTTGGATAGCTCTCCGAAAATTGAGATTGTTTCTGAGAGAGACTGTACGGAATTAGAATTGAAGATTTGTCAAAGTGAGCTGAGACTGTGCAAGAACCAATTGCGTGATTTGTTGTGGGGAGTTGTAAGATTAAAGCAACAACGCGATAAAATCTCCCAGGTTTAA

Protein sequence

MTDIEENSEDSDATIDELMKEEEEEIGYPLCELALESNRESANAAEEHKKEREDPQDLEKEKEKDDRGINVEDRMPYTTRMEELKDVLHELYNLKKVFLKNKLKPWNRSNLAEFEDPKMKEREKKMKEGRLLIKDVSNNDEKKKCEEESSSSRKGKEKIYEPEQIYDPLKLIRDIIYGFCDYIENINEMAKQRVKVEMDWSAHFENGVEVMKKLTEKLRQLNEEMQRMKKRKDERENYVKIHEMLSKMEEINAVLDSSPKIEIVSERDCTELELKICQSELRLCKNQLRDLLWGVVRLKQQRDKISQV
Homology
BLAST of Tan0004406 vs. NCBI nr
Match: KAG6594503.1 (hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 201.8 bits (512), Expect = 8.4e-48
Identity = 127/280 (45.36%), Postives = 193/280 (68.93%), Query Frame = 0

Query: 33  LALESNRESANAAEEHKKEREDPQD--LEKEKEKDDRGINVEDRMPYTTRMEELKDVLHE 92
           +A ESNRES +AA EH++E+E+PQ+     E E++D G  V++    +T   ++  V   
Sbjct: 1   MAHESNRESVHAAAEHEQEQENPQEDMNNVENEQNDPGEIVQNEEVRSTTENQVIAV-QT 60

Query: 93  LYNLKKVFLKNKLKPWNRSNLAEFEDPKMKEREKKMKEGRLLIKDVSNN---DEKKKCEE 152
           LYN KK  LK  L+ WNRS+L E EDPKMKE E++ KEGRL+IKDV ++   D KK+ +E
Sbjct: 61  LYNFKKKHLKTILQLWNRSHLKELEDPKMKEVERRKKEGRLIIKDVEDDGSFDRKKQKKE 120

Query: 153 ------ESSSSRKGKEKIYEPEQIYDPLKLIRDIIYGFCDYIENINEMAKQRVKVEMDWS 212
                 E S+SRKGKEKI+EPE I+DPL L+R I  GF  YI ++ EMA +R +   +W 
Sbjct: 121 NKNLFNEFSTSRKGKEKIHEPEIIFDPLVLLRCITLGFSVYIGHLMEMAIERRRGAPNWI 180

Query: 213 AHFENGVEVMKKLTEKLRQLNEEMQRMKKRKDERENYVKIHEMLSKMEEINAVLDSSPKI 272
           +  E G +++  +  K++ +N+EM+R+++RKD RE YVK H +L++++EI+  +++SP I
Sbjct: 181 SQLEEGADLLDGVIRKVQIMNDEMRRIRRRKDLREEYVKFHTILTQLDEIDQHMEASPNI 240

Query: 273 EIVSERDCTELELKICQSELRLCKNQLRDLLWGVVRLKQQ 302
            IVSE+DCT+LEL++C+ EL+ CKN   +L+  V++L ++
Sbjct: 241 GIVSEKDCTDLELRVCEHELKCCKNGADELVSEVLKLMKE 279

BLAST of Tan0004406 vs. NCBI nr
Match: KAA0052573.1 (hypothetical protein E6C27_scaffold120G001780 [Cucumis melo var. makuwa] >TYK13252.1 hypothetical protein E5676_scaffold255G008700 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 5.3e-10
Identity = 69/245 (28.16%), Postives = 127/245 (51.84%), Query Frame = 0

Query: 56  QDLEKEKEKDDRGINVEDRMPYTTRMEELKDVLHELYNLKKVFLKNKLKPWNRSNLAEFE 115
           Q+L  E +KD+    + +++  + R E +     E + +++         WNR+      
Sbjct: 6   QELTDEHKKDE----LIEKLLTSLRKERM-----ETFQVERRLTSELFTLWNRN------ 65

Query: 116 DPKMKEREKKMKEGRLLIKDVSNNDEKKKCEEESSSSRKGKEKIYEPEQIYDPLKLIRDI 175
               +E++KKM++ RL+IKD          E  +SS +KGKEK+        PL ++ D+
Sbjct: 66  ----EEKQKKMRDRRLVIKD----------EGTTSSRKKGKEKLISDY----PLAILNDL 125

Query: 176 IYGFCDYIENINEMA--KQRVKVEMDWSAHFENGVEVMKKLTEKLRQ-LNEEMQRMKKRK 235
           I  F DY++N+ +M       K E  W  +F+ G+EV + +   L++ L +++  MK  +
Sbjct: 126 IARFVDYVDNMKDMTTITNTQKTENGWLDYFKAGIEVFRLINTNLKKLLIKDVSWMK--E 185

Query: 236 DERENYVKIHEMLSKMEEINAVLDSSPKIEIVSERDCTELELKICQSELRLCKNQLRDLL 295
           ++ ENY +++E +S++E+IN +LD       V+E D T  + ++C+   + C   L  LL
Sbjct: 186 EDPENYTQVYEKMSRLEKINEILDDCQ----VTESDLTTSDFEVCKHGFQECAKDLNKLL 211

Query: 296 WGVVR 298
             +VR
Sbjct: 246 DDMVR 211

BLAST of Tan0004406 vs. ExPASy TrEMBL
Match: A0A5A7U9J9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G008700 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.6e-10
Identity = 69/245 (28.16%), Postives = 127/245 (51.84%), Query Frame = 0

Query: 56  QDLEKEKEKDDRGINVEDRMPYTTRMEELKDVLHELYNLKKVFLKNKLKPWNRSNLAEFE 115
           Q+L  E +KD+    + +++  + R E +     E + +++         WNR+      
Sbjct: 6   QELTDEHKKDE----LIEKLLTSLRKERM-----ETFQVERRLTSELFTLWNRN------ 65

Query: 116 DPKMKEREKKMKEGRLLIKDVSNNDEKKKCEEESSSSRKGKEKIYEPEQIYDPLKLIRDI 175
               +E++KKM++ RL+IKD          E  +SS +KGKEK+        PL ++ D+
Sbjct: 66  ----EEKQKKMRDRRLVIKD----------EGTTSSRKKGKEKLISDY----PLAILNDL 125

Query: 176 IYGFCDYIENINEMA--KQRVKVEMDWSAHFENGVEVMKKLTEKLRQ-LNEEMQRMKKRK 235
           I  F DY++N+ +M       K E  W  +F+ G+EV + +   L++ L +++  MK  +
Sbjct: 126 IARFVDYVDNMKDMTTITNTQKTENGWLDYFKAGIEVFRLINTNLKKLLIKDVSWMK--E 185

Query: 236 DERENYVKIHEMLSKMEEINAVLDSSPKIEIVSERDCTELELKICQSELRLCKNQLRDLL 295
           ++ ENY +++E +S++E+IN +LD       V+E D T  + ++C+   + C   L  LL
Sbjct: 186 EDPENYTQVYEKMSRLEKINEILDDCQ----VTESDLTTSDFEVCKHGFQECAKDLNKLL 211

Query: 296 WGVVR 298
             +VR
Sbjct: 246 DDMVR 211

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAG6594503.18.4e-4845.36hypothetical protein SDJN03_11056, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0052573.15.3e-1028.16hypothetical protein E6C27_scaffold120G001780 [Cucumis melo var. makuwa] >TYK132... [more]
Match NameE-valueIdentityDescription
A0A5A7U9J92.6e-1028.16Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 1..21
NoneNo IPR availableCOILSCoilCoilcoord: 204..238
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..74
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0004406.1Tan0004406.1mRNA