Tan0004400 (gene) Snake gourd v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTAAACTCAAAGCAATCCGAAAACAAAAGTCCTCGAGAAAAGGACCCTGTGAAGGCAGTGCCACTTTCACTTCCTTTTGAGTAAAATTTATAAAGGGATGAGCAGAAGCAGTAGCTTCTCTGAGAAAATGGGTGCTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCTCTGGTCATGAAGGAGATTGAGTACTTCACCAAGCTTGAGCTCGAACGCCATGGCGCCTCTCACAGGATAAGTGGAGATGCTTCCAGGAGAAGCGATTCTAAGACAAGCTTTTGGCTTTTGTCGTTGACTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTTTACCTAACATTTGCTCTGCTGTTGAATTGTCGAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATCCTCAAAGACGATGTCAACCACTTTCCCATTTGATTTCAGCCTTCAAATTCAAATGGGTCTTGTTTGCTTTTTGTTGAAGTGCTTTTCCTTGCTCTGTTTGTATTTCATTTTAAGGTTTGCTACGTTTTGACTGGAAAAATGAAATAAGAGTTCGATTGCTGATTTGATTGAAA CCTAAACTCAAAGCAATCCGAAAACAAAAGTCCTCGAGAAAAGGACCCTGTGAAGGCAGTGCCACTTTCACTTCCTTTTGAGTAAAATTTATAAAGGGATGAGCAGAAGCAGTAGCTTCTCTGAGAAAATGGGTGCTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCTCTGGTCATGAAGGAGATTGAGTACTTCACCAAGCTTGAGCTCGAACGCCATGGCGCCTCTCACAGGATAAGTGGAGATGCTTCCAGGAGAAGCGATTCTAAGACAAGCTTTTGGCTTTTGTCGTTGACTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTTTACCTAACATTTGCTCTGCTGTTGAATTGTCGAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATCCTCAAAGACGATGTCAACCACTTTCCCATTTGATTTCAGCCTTCAAATTCAAATGGGTCTTGTTTGCTTTTTGTTGAAGTGCTTTTCCTTGCTCTGTTTGTATTTCATTTTAAGGTTTGCTACGTTTTGACTGGAAAAATGAAATAAGAGTTCGATTGCTGATTTGATTGAAA ATGAGCAGAAGCAGTAGCTTCTCTGAGAAAATGGGTGCTGTTGCTCCACTTGCAATTGGCACGCGAGGCACTGTGGGGTCTCTGGTCATGAAGGAGATTGAGTACTTCACCAAGCTTGAGCTCGAACGCCATGGCGCCTCTCACAGGATAAGTGGAGATGCTTCCAGGAGAAGCGATTCTAAGACAAGCTTTTGGCTTTTGTCGTTGACTTGGAAGTGGAAGAAGAGAAGAACCAACAATGGGATTTTACCTAACATTTGCTCTGCTGTTGAATTGTCGAAAAGCAATCGGTTTAATGGGATTCCTGGTTTTGGTTACAGGATCCTCAAAGACGATGTCAACCACTTTCCCATTTGA MSRSSSFSEKMGAVAPLAIGTRGTVGSLVMKEIEYFTKLELERHGASHRISGDASRRSDSKTSFWLLSLTWKWKKRRTNNGILPNICSAVELSKSNRFNGIPGFGYRILKDDVNHFPI Homology
BLAST of Tan0004400 vs. NCBI nr
Match: XP_022926407.1 (uncharacterized protein LOC111433571 [Cucurbita moschata] >KAG7026623.1 hypothetical protein SDJN02_10625, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 227.6 bits (579), Expect = 5.5e-56 Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Tan0004400 vs. NCBI nr
Match: XP_023003961.1 (uncharacterized protein LOC111497407 [Cucurbita maxima]) HSP 1 Score: 226.1 bits (575), Expect = 1.6e-55 Identity = 108/118 (91.53%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Tan0004400 vs. NCBI nr
Match: KAG6594656.1 (hypothetical protein SDJN03_11209, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55 Identity = 109/118 (92.37%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Tan0004400 vs. NCBI nr
Match: XP_023518155.1 (uncharacterized protein LOC111781699 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 225.7 bits (574), Expect = 2.1e-55 Identity = 109/118 (92.37%), Postives = 114/118 (96.61%), Query Frame = 0
BLAST of Tan0004400 vs. NCBI nr
Match: XP_038882225.1 (uncharacterized protein LOC120073447 [Benincasa hispida]) HSP 1 Score: 211.8 bits (538), Expect = 3.1e-51 Identity = 106/118 (89.83%), Postives = 107/118 (90.68%), Query Frame = 0
BLAST of Tan0004400 vs. ExPASy TrEMBL
Match: A0A6J1EEE9 (uncharacterized protein LOC111433571 OS=Cucurbita moschata OX=3662 GN=LOC111433571 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 2.6e-56 Identity = 110/118 (93.22%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Tan0004400 vs. ExPASy TrEMBL
Match: A0A6J1KQQ8 (uncharacterized protein LOC111497407 OS=Cucurbita maxima OX=3661 GN=LOC111497407 PE=4 SV=1) HSP 1 Score: 226.1 bits (575), Expect = 7.7e-56 Identity = 108/118 (91.53%), Postives = 115/118 (97.46%), Query Frame = 0
BLAST of Tan0004400 vs. ExPASy TrEMBL
Match: A0A6J1CKN5 (uncharacterized protein LOC111012477 OS=Momordica charantia OX=3673 GN=LOC111012477 PE=4 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 9.1e-49 Identity = 101/120 (84.17%), Postives = 108/120 (90.00%), Query Frame = 0
BLAST of Tan0004400 vs. ExPASy TrEMBL
Match: A0A6J1IJL8 (uncharacterized protein LOC111477686 OS=Cucurbita maxima OX=3661 GN=LOC111477686 PE=4 SV=1) HSP 1 Score: 200.7 bits (509), Expect = 3.5e-48 Identity = 100/118 (84.75%), Postives = 105/118 (88.98%), Query Frame = 0
BLAST of Tan0004400 vs. ExPASy TrEMBL
Match: A0A0A0KL84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514830 PE=4 SV=1) HSP 1 Score: 200.3 bits (508), Expect = 4.5e-48 Identity = 103/119 (86.55%), Postives = 107/119 (89.92%), Query Frame = 0
BLAST of Tan0004400 vs. TAIR 10
Match: AT4G21780.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 83.2 bits (204), Expect = 1.6e-16 Identity = 49/109 (44.95%), Postives = 60/109 (55.05%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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