Tan0004371 (gene) Snake gourd v1

Overview


Name	Tan0004371
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein BIC2
Location	LG05: 995980 .. 996768 (+)
RNA-Seq Expression	Tan0004371
Synteny	Tan0004371

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAGTGGTATGAAATTTTTTTCTCCAAAACTCCATGTCCCTTCTCAACGTAGCTAGTCCATTCACCATTCAAATGTCGATAAAATAGTTTCTTTTTTCTTTTTAAGAAAAAAAAAAAAAGTTTGACGTGTACACTAACTCCCCACACAACCCTTCTATTTAATTATTGTTTGTGAGTCCCAAAATTCAACAGACCAATCGCCATGATTCCTCAAAATTGCTCTGATTCCGAAACAAACAGCTCTGCAGCCGTCGCCGTTGGTGGGTCGGCCGGAGATTCGGGCGGCGGCGTTGAGAAATTGAAGAGTTGTTGTGGGGTTCGAGAGCGGCTGAAGAGGCACCGTGAGGAGGTGGCCGGGAAAGTGACGGTGCCAGAGAAATGGGGGAAAGAGGAGCTGCTAAAGGATTGGATTGACTACTCGGCGTTCGACAGAATCTTGGCCGCCAGCAGAATTGCGTCGGCGAGGGCGTCGCTTGCGGCGGAGGGAAGGCGGGCCAGTTCCCGTTCACGGCCGCCGTTGAGGGTAGAAAGTAGGTGTTGAGATGGAAATCTCTGTTTAAATTTACTTTTAGCCTCTTTGAATTCATTAATGATTAATGTCATAGAGAAGCGAAAACACAGATCATAAAATTCATACTTGGGCCTTCGTTTTGTGAGTGATTGATTTAATTTGTGTGTAAATCTAAAGAGCCTTATGGAATAATTTTATGTTGGGTTTATATTTTTATTTGCTTTTATAGTCCATGTAATTTCCTTTTATTTATTGGAGGTTGCAATTAATTTCTCA

mRNA sequence

GGAAAGTGGTATGAAATTTTTTTCTCCAAAACTCCATGTCCCTTCTCAACGTAGCTAGTCCATTCACCATTCAAATGTCGATAAAATAGTTTCTTTTTTCTTTTTAAGAAAAAAAAAAAAAGTTTGACGTGTACACTAACTCCCCACACAACCCTTCTATTTAATTATTGTTTGTGAGTCCCAAAATTCAACAGACCAATCGCCATGATTCCTCAAAATTGCTCTGATTCCGAAACAAACAGCTCTGCAGCCGTCGCCGTTGGTGGGTCGGCCGGAGATTCGGGCGGCGGCGTTGAGAAATTGAAGAGTTGTTGTGGGGTTCGAGAGCGGCTGAAGAGGCACCGTGAGGAGGTGGCCGGGAAAGTGACGGTGCCAGAGAAATGGGGGAAAGAGGAGCTGCTAAAGGATTGGATTGACTACTCGGCGTTCGACAGAATCTTGGCCGCCAGCAGAATTGCGTCGGCGAGGGCGTCGCTTGCGGCGGAGGGAAGGCGGGCCAGTTCCCGTTCACGGCCGCCGTTGAGGGTAGAAAGTAGGTGTTGAGATGGAAATCTCTGTTTAAATTTACTTTTAGCCTCTTTGAATTCATTAATGATTAATGTCATAGAGAAGCGAAAACACAGATCATAAAATTCATACTTGGGCCTTCGTTTTGTGAGTGATTGATTTAATTTGTGTGTAAATCTAAAGAGCCTTATGGAATAATTTTATGTTGGGTTTATATTTTTATTTGCTTTTATAGTCCATGTAATTTCCTTTTATTTATTGGAGGTTGCAATTAATTTCTCA

Coding sequence (CDS)

ATGATTCCTCAAAATTGCTCTGATTCCGAAACAAACAGCTCTGCAGCCGTCGCCGTTGGTGGGTCGGCCGGAGATTCGGGCGGCGGCGTTGAGAAATTGAAGAGTTGTTGTGGGGTTCGAGAGCGGCTGAAGAGGCACCGTGAGGAGGTGGCCGGGAAAGTGACGGTGCCAGAGAAATGGGGGAAAGAGGAGCTGCTAAAGGATTGGATTGACTACTCGGCGTTCGACAGAATCTTGGCCGCCAGCAGAATTGCGTCGGCGAGGGCGTCGCTTGCGGCGGAGGGAAGGCGGGCCAGTTCCCGTTCACGGCCGCCGTTGAGGGTAGAAAGTAGGTGTTGA

Protein sequence

MIPQNCSDSETNSSAAVAVGGSAGDSGGGVEKLKSCCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVESRC

Homology

[Close]

BLAST of Tan0004371 vs. ExPASy Swiss-Prot
Match: Q9M280 (Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.9e-14
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 40  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAE-GRRA 99
           R+RLKRHREEVAGKV +P+ WGKE LL  W+D+S FD    +S+I SARA+L A+ G  A
Sbjct: 41  RDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDA 100

Query: 100 SSR-SRPP-LRVESRC 113
            +R SRP  LRVES C
Sbjct: 101 GARGSRPQRLRVESSC 116

[Close]

BLAST of Tan0004371 vs. ExPASy Swiss-Prot
Match: Q9LXJ1 (Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.1e-14
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 40  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRAS 99
           RERLK+HR E+AG+V +PE WG+EELLKDWID S FD  L  + I+SAR +L  E RRA+
Sbjct: 67  RERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

Query: 100 SRS 103
           S S
Sbjct: 127 SAS 129

[Close]

BLAST of Tan0004371 vs. NCBI nr
Match: KAG7010351.1 (60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 146.0 bits (367), Expect = 2.0e-31
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MIPQNCSDSE-------TNSSAAVAVGGSAGDSGGGVEKLKSCCGVRERLKRHREEVAGK 60
           M+P N SDS         ++ AA  V GS GDS GG EK K CCG RERLKRHREEVAGK
Sbjct: 1   MVPPNRSDSGDRLSTGINSTPAAAPVDGSPGDSSGGAEKFKGCCGFRERLKRHREEVAGK 60

Query: 61  VTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSR 102
           VTVPEKWGKEELLKDWIDYSAFDRILAA RIASARASL AEGRR  SR
Sbjct: 61  VTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRRVESR 108

[Close]

BLAST of Tan0004371 vs. NCBI nr
Match: KAG6570486.1 (Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 145.6 bits (366), Expect = 2.6e-31
Identity = 79/104 (75.96%), Postives = 82/104 (78.85%), Query Frame = 0


Query: 1   MIPQNCSDSE-------TNSSAAVAVGGSAGDSGGGVEKLKSCCGVRERLKRHREEVAGK 60
           M+P N SDS         ++ AA  V GS GDS GG EKLK CCG RERLKRHREEVAGK
Sbjct: 1   MVPPNRSDSGDRLSTGINSTPAAAPVDGSPGDSSGGAEKLKGCCGFRERLKRHREEVAGK 60

Query: 61  VTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRR 98
           VTVPEKWGKEELLKDWIDYSAFDRILAA RIASARASL AEGRR
Sbjct: 61  VTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLVAEGRR 104

[Close]

BLAST of Tan0004371 vs. NCBI nr
Match: KGN46948.1 (hypothetical protein Csa_020684 [Cucumis sativus])

HSP 1 Score: 144.8 bits (364), Expect = 4.4e-31
Identity = 86/122 (70.49%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 1   MIPQNCSDSETNSSAAVA--------VGGSAGDSGGGV--EKLKSCCGVRERLKRHREEV 60
           M+P N SD++ + S   +         GGS GDS GGV  EKLK C GVRERLKRHREEV
Sbjct: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVES 113
           AGKV VPEKWGKEELLKDWIDYSAFDRILAA RIASARASLAAEG+R S RS    RVES
Sbjct: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSW--RRVES 123

[Close]

BLAST of Tan0004371 vs. NCBI nr
Match: XP_022153004.1 (protein BIC2 [Momordica charantia])

HSP 1 Score: 141.7 bits (356), Expect = 3.7e-30
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 27  GGGVEKL----KSCCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAS 86
           G GVEKL    KS CGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAA 
Sbjct: 18  GSGVEKLLQPSKSSCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAK 77

Query: 87  RIASARASLAAEGRRASSRSRPPLRVESRC 113
           RIA+ARASLAAEGRRA++ SRP LRVESRC
Sbjct: 78  RIATARASLAAEGRRAAN-SRPALRVESRC 106

[Close]

BLAST of Tan0004371 vs. NCBI nr
Match: TYK18920.1 (uncharacterized protein E5676_scaffold28061G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-29
Identity = 86/122 (70.49%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MIPQNCS---DSETNSSAAVA-----VGGSAGDSGG--GVEKLKSCCGVRERLKRHREEV 60
           MIP N S   DS +  ++A A      G S GDS    G EKLK CCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVES 113
           AGKVTVPEKWGKEELLKDWIDYSAFDRILAA RIASARASLAAEG++  SR     RVES
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRR----RVES 118

[Close]

BLAST of Tan0004371 vs. ExPASy TrEMBL
Match: A0A0A0KBS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 86/122 (70.49%), Postives = 92/122 (75.41%), Query Frame = 0


Query: 1   MIPQNCSDSETNSSAAVA--------VGGSAGDSGGGV--EKLKSCCGVRERLKRHREEV 60
           M+P N SD++ + S   +         GGS GDS GGV  EKLK C GVRERLKRHREEV
Sbjct: 4   MVPPNSSDADDSPSVGASATAPAPSPAGGSTGDSSGGVGAEKLKGCFGVRERLKRHREEV 63

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVES 113
           AGKV VPEKWGKEELLKDWIDYSAFDRILAA RIASARASLAAEG+R S RS    RVES
Sbjct: 64  AGKVMVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQRNSRRSW--RRVES 123

[Close]

BLAST of Tan0004371 vs. ExPASy TrEMBL
Match: A0A6J1DHR5 (protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.8e-30
Identity = 78/90 (86.67%), Postives = 81/90 (90.00%), Query Frame = 0


Query: 27  GGGVEKL----KSCCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAS 86
           G GVEKL    KS CGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAA 
Sbjct: 18  GSGVEKLLQPSKSSCGVRERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAAK 77

Query: 87  RIASARASLAAEGRRASSRSRPPLRVESRC 113
           RIA+ARASLAAEGRRA++ SRP LRVESRC
Sbjct: 78  RIATARASLAAEGRRAAN-SRPALRVESRC 106

[Close]

BLAST of Tan0004371 vs. ExPASy TrEMBL
Match: A0A5D3D5X1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold28061G00010 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.5e-29
Identity = 86/122 (70.49%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MIPQNCS---DSETNSSAAVA-----VGGSAGDSGG--GVEKLKSCCGVRERLKRHREEV 60
           MIP N S   DS +  ++A A      G S GDS    G EKLK CCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVES 113
           AGKVTVPEKWGKEELLKDWIDYSAFDRILAA RIASARASLAAEG++  SR     RVES
Sbjct: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRR----RVES 118

[Close]

BLAST of Tan0004371 vs. ExPASy TrEMBL
Match: A0A5A7STT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00580 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.4e-29
Identity = 85/122 (69.67%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MIPQNCS---DSETNSSAAVA-----VGGSAGDSGG--GVEKLKSCCGVRERLKRHREEV 60
           MIP N S   DS +  ++A A      G S GDS    G EKLK CCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVES 113
           AGKVTVP+KWGKEELLKDWIDYSAFDRILAA RIASARASLAAEG++  SR     RVES
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRR----RVES 118

[Close]

BLAST of Tan0004371 vs. ExPASy TrEMBL
Match: A0A1S3C9F3 (uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 3.4e-29
Identity = 85/122 (69.67%), Postives = 91/122 (74.59%), Query Frame = 0


Query: 1   MIPQNCS---DSETNSSAAVA-----VGGSAGDSGG--GVEKLKSCCGVRERLKRHREEV 60
           MIP N S   DS +  ++A A      G S GDS    G EKLK CCGVRERLKRHREEV
Sbjct: 1   MIPPNSSHPHDSLSVVASATAPAPSPAGASTGDSSSTVGPEKLKGCCGVRERLKRHREEV 60

Query: 61  AGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRASSRSRPPLRVES 113
           AGKVTVP+KWGKEELLKDWIDYSAFDRILAA RIASARASLAAEG++  SR     RVES
Sbjct: 61  AGKVTVPDKWGKEELLKDWIDYSAFDRILAAGRIASARASLAAEGQQNRSRR----RVES 118

[Close]

BLAST of Tan0004371 vs. TAIR 10
Match: AT3G44450.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G52740.1); Has 63 Blast hits to 63 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 2.8e-15
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 0


Query: 40  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAE-GRRA 99
           R+RLKRHREEVAGKV +P+ WGKE LL  W+D+S FD    +S+I SARA+L A+ G  A
Sbjct: 41  RDRLKRHREEVAGKVPIPDSWGKEGLLMGWMDFSTFDAAFTSSQIVSARAALMADSGDDA 100

Query: 100 SSR-SRPP-LRVESRC 113
            +R SRP  LRVES C
Sbjct: 101 GARGSRPQRLRVESSC 116

[Close]

BLAST of Tan0004371 vs. TAIR 10
Match: AT3G52740.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G44450.1); Has 65 Blast hits to 65 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 78.6 bits (192), Expect = 3.6e-15
Identity = 39/63 (61.90%), Postives = 48/63 (76.19%), Query Frame = 0


Query: 40  RERLKRHREEVAGKVTVPEKWGKEELLKDWIDYSAFDRILAASRIASARASLAAEGRRAS 99
           RERLK+HR E+AG+V +PE WG+EELLKDWID S FD  L  + I+SAR +L  E RRA+
Sbjct: 67  RERLKKHRREIAGRVWIPEIWGQEELLKDWIDCSTFDTCLVPAGISSARTALVEEARRAA 126

Query: 100 SRS 103
           S S
Sbjct: 127 SAS 129

The following BLAST results are available for this feature:

BLAST of Tan0004371 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M280	3.9e-14	60.53	Protein BIC2 OS=Arabidopsis thaliana OX=3702 GN=BIC2 PE=1 SV=1	[more]
Q9LXJ1	5.1e-14	61.90	Protein BIC1 OS=Arabidopsis thaliana OX=3702 GN=BIC1 PE=1 SV=1	[more]

BLAST of Tan0004371 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7010351.1	2.0e-31	74.07	60S ribosomal protein L10a, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6570486.1	2.6e-31	75.96	Protein HIRA, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KGN46948.1	4.4e-31	70.49	hypothetical protein Csa_020684 [Cucumis sativus]	[more]
XP_022153004.1	3.7e-30	86.67	protein BIC2 [Momordica charantia]	[more]
TYK18920.1	3.2e-29	70.49	uncharacterized protein E5676_scaffold28061G00010 [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004371 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBS7	2.1e-31	70.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G152340 PE=4 SV=1	[more]
A0A6J1DHR5	1.8e-30	86.67	protein BIC2 OS=Momordica charantia OX=3673 GN=LOC111020610 PE=4 SV=1	[more]
A0A5D3D5X1	1.5e-29	70.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7STT7	3.4e-29	69.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A1S3C9F3	3.4e-29	69.67	uncharacterized protein LOC103497945 OS=Cucumis melo OX=3656 GN=LOC103497945 PE=...	[more]

BLAST of Tan0004371 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G44450.1	2.8e-15	60.53	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52740.1	3.6e-15	61.90	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..112
None	No IPR available	PANTHER	PTHR34207:SF12	SUBFAMILY NOT NAMED	coord: 10..112
IPR040374	Protein BIC	PANTHER	PTHR34207	PROTEIN BIC1	coord: 10..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004371.1	Tan0004371.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009785	blue light signaling pathway