Tan0004322 (gene) Snake gourd v1

Overview


Name	Tan0004322
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG01: 98198685 .. 98199170 (+)
RNA-Seq Expression	Tan0004322
Synteny	Tan0004322

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCGAGGCCAATGTAAGGCCAAAGTCTATATGTTGGCAAGTATCTCTGACATACTAGCCAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCACGGATTCGTTGCAGGGCATGTTTGGACAACAGTCTACACAGGCCCGACACAATGCCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCTTGGATATGATGGTACACTTCAATATCGCGGAGTCGAATGGTACTTCCATCGATAAATCGAGCCAAGTCAACTTCATTCTGGAAACTCTTCCAGATAGTTTCTTACAGTTTAGAAGTAATGTTGTTATGAACAAGGTTACTTTTAATCTCACTTCCCTTCTGAATGAACTCCAGGCCTTTCAGCCTTTGATGAAAATTCAGGGACCGAAAGGTGAGGCAAATGTTACCAGTAAGAGTTATAACAATCAGTGGCTTCATCTTCTTCTAACCTGA

mRNA sequence

ATGGATCGAGGCCAATGTAAGGCCAAAGTCTATATGTTGGCAAGTATCTCTGACATACTAGCCAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCACGGATTCGTTGCAGGGCATGTTTGGACAACAGTCTACACAGGCCCGACACAATGCCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCTTGGATATGATGGTACACTTCAATATCGCGGAGTCGAATGGTACTTCCATCGATAAATCGAGCCAAGTCAACTTCATTCTGGAAACTCTTCCAGATAGTTTCTTACAGTTTAGAAGTAATGTTGTTATGAACAAGGTTACTTTTAATCTCACTTCCCTTCTGAATGAACTCCAGGCCTTTCAGCCTTTGATGAAAATTCAGGGACCGAAAGGTGAGGCAAATGTTACCAGTAAGAGTTATAACAATCAGTGGCTTCATCTTCTTCTAACCTGA

Coding sequence (CDS)

ATGGATCGAGGCCAATGTAAGGCCAAAGTCTATATGTTGGCAAGTATCTCTGACATACTAGCCAAGAAGCACGAGGGCATGATGACCGCTAAGGAAATCACGGATTCGTTGCAGGGCATGTTTGGACAACAGTCTACACAGGCCCGACACAATGCCCTCAAGTATATATTCAACTCGAGGATGCCAGAGGGTTCATCTGTTCGGGATCATGTCTTGGATATGATGGTACACTTCAATATCGCGGAGTCGAATGGTACTTCCATCGATAAATCGAGCCAAGTCAACTTCATTCTGGAAACTCTTCCAGATAGTTTCTTACAGTTTAGAAGTAATGTTGTTATGAACAAGGTTACTTTTAATCTCACTTCCCTTCTGAATGAACTCCAGGCCTTTCAGCCTTTGATGAAAATTCAGGGACCGAAAGGTGAGGCAAATGTTACCAGTAAGAGTTATAACAATCAGTGGCTTCATCTTCTTCTAACCTGA

Protein sequence

MDRGQCKAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSSVRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLNELQAFQPLMKIQGPKGEANVTSKSYNNQWLHLLLT

Homology

[Close]

BLAST of Tan0004322 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 67  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 126

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 127 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 186

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 187 ELQTFESLMKIKGQKGEANVATST 210

[Close]

BLAST of Tan0004322 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. NCBI nr
Match: KAA0051952.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.8e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. ExPASy TrEMBL
Match: A0A5A7V4M1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G00930 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 185 KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 244

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 245 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 304

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 305 ELQTFESLMKIKGQKGEANVATST 328

[Close]

BLAST of Tan0004322 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

[Close]

BLAST of Tan0004322 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 4.3e-49
Identity = 98/144 (68.06%), Postives = 125/144 (86.81%), Query Frame = 0


Query: 7   KAKVYMLASISDILAKKHEGMMTAKEITDSLQGMFGQQSTQARHNALKYIFNSRMPEGSS 66
           KA+ Y+LAS+S++LAKKHE M+TA+EI DSLQ MFGQ S Q +H+ALKYI+N+RM EG+S
Sbjct: 68  KARAYILASLSEVLAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGAS 127

Query: 67  VRDHVLDMMVHFNIAESNGTSIDKSSQVNFILETLPDSFLQFRSNVVMNKVTFNLTSLLN 126
           VR+HVL+MMVHFN+AE NG  ID++SQV+FILE+LP+SFLQFRSN VMNK+ + LT+LLN
Sbjct: 128 VREHVLNMMVHFNVAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLN 187

Query: 127 ELQAFQPLMKIQGPKGEANVTSKS 151
           ELQ F+ LMKI+G KGEANV + +
Sbjct: 188 ELQTFESLMKIKGQKGEANVATST 211

The following BLAST results are available for this feature:

BLAST of Tan0004322 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004322 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044955.1	8.8e-49	68.06	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	8.8e-49	68.06	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	8.8e-49	68.06	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	8.8e-49	68.06	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051952.1	8.8e-49	68.06	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004322 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SMH8	4.3e-49	68.06	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	4.3e-49	68.06	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7V4M1	4.3e-49	68.06	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0093...	[more]
A0A5A7TU93	4.3e-49	68.06	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7TWB9	4.3e-49	68.06	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0004322 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 5..129 e-value: 1.1E-16 score: 60.8
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..153
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 7..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004322.1	Tan0004322.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding