Tan0004240 (gene) Snake gourd v1

Overview


Name	Tan0004240
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG05: 75750734 .. 75751087 (+)
RNA-Seq Expression	Tan0004240
Synteny	Tan0004240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATCTAGTCAAACCCCTGCAATAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTCAGTTGCTTCTTTATCCGTCCAACAACTACAAGACACGATCATGAGTTTTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACATACTCCAAACCTTACACCAAGAGGATTGACAATTTGAGGATGCCCACAGGGTACCAACCTCCAAAGTTCCAGTAG

mRNA sequence

ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATCTAGTCAAACCCCTGCAATAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTCAGTTGCTTCTTTATCCGTCCAACAACTACAAGACACGATCATGAGTTTTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACATACTCCAAACCTTACACCAAGAGGATTGACAATTTGAGGATGCCCACAGGGTACCAACCTCCAAAGTTCCAGTAG

Coding sequence (CDS)

ATGGCGGAGATGGAAAGAAAAATCAATCTCCTGATGAAGGCGGTAGAAGAAAGAGATCTTGAAATCGCCTACCTCAAAAGCCAAGTCCAAAACAAAGAAATGGTTGAATCTAGTCAAACCCCTGCAATAAGAAACAATGACAAGGGGAAAAATATCATCCAAGAGGAGCAACCGCCTCAACTAGCTTCAGTTGCTTCTTTATCCGTCCAACAACTACAAGACACGATCATGAGTTTTATCAGAGCTCAATATGGCGGACCCGCTCAAAATCCTCTCACATACTCCAAACCTTACACCAAGAGGATTGACAATTTGAGGATGCCCACAGGGTACCAACCTCCAAAGTTCCAGTAG

Protein sequence

MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQLASVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ

Homology

[Close]

BLAST of Tan0004240 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-37
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-37
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-37
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. NCBI nr
Match: XP_031744658.1 (uncharacterized protein LOC116405107 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-37
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. NCBI nr
Match: XP_031740568.1 (uncharacterized protein LOC116403508 [Cucumis sativus])

HSP 1 Score: 164.5 bits (415), Expect = 5.6e-37
Identity = 87/118 (73.73%), Postives = 97/118 (82.20%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKINLLMK V+ERD EIA LK Q+Q +E  ESSQTP ++ +DKGKN++QE QP Q
Sbjct: 95  MAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I S IRAQYGGP+Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSTSVASLSVQQLQDMITSSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. ExPASy TrEMBL
Match: A0A5A7T9K9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00280 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 6.7e-36
Identity = 83/118 (70.34%), Postives = 95/118 (80.51%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMKA EERD EI  L+ Q++ +E  ESSQTP ++  DKGKN++QE QP Q
Sbjct: 48  MAEMERKINFLMKAAEERDHEITALREQMRTRETTESSQTPVVKATDKGKNVVQENQPQQ 107

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I++FIRAQYGGP Q    YSKPYTKRID+LRMP GYQPPKFQ
Sbjct: 108 QSVSVASLSVQQLQDMIVNFIRAQYGGPPQTTFMYSKPYTKRIDSLRMPLGYQPPKFQ 165

[Close]

BLAST of Tan0004240 vs. ExPASy TrEMBL
Match: A0A5D3BZH8 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002100 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.7e-35
Identity = 85/118 (72.03%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMK VEERD EIA LK Q++  E  ESSQTP ++  DKGKN++QE QP Q
Sbjct: 95  MAEMERKINFLMKVVEERDHEIAALKDQMKACETGESSQTPVVKATDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I + IRAQYGGP Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSVSVASLSVQQLQDMIANSIRAQYGGPPQTTFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. ExPASy TrEMBL
Match: A0A5A7VDN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00050 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 9.7e-35
Identity = 82/118 (69.49%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMKAVEERD EI  L+ Q++ +E  ESSQTP ++  DKGKN++Q+ QP Q
Sbjct: 48  MAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATDKGKNVVQKNQPQQ 107

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I + IRAQYGGP      YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 108 QSVSVASLSVQQLQDMIANSIRAQYGGPPHTTFMYSKPYTKRIDNLRMPLGYQPPKFQ 165

[Close]

BLAST of Tan0004240 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 83/118 (70.34%), Postives = 93/118 (78.81%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           MAEMERKIN LMKAVEERD EI  L+ Q++ +E  ESSQTP ++  DKGKN++QE QP Q
Sbjct: 95  MAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVKATDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I + IRAQYGGP Q    YSK YTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSVSVASLSVQQLQDMIANSIRAQYGGPPQTTFMYSKSYTKRIDNLRMPLGYQPPKFQ 212

[Close]

BLAST of Tan0004240 vs. ExPASy TrEMBL
Match: A0A5D3DIN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00020 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.3e-34
Identity = 82/118 (69.49%), Postives = 94/118 (79.66%), Query Frame = 0


Query: 1   MAEMERKINLLMKAVEERDLEIAYLKSQVQNKEMVESSQTPAIRNNDKGKNIIQEEQPPQ 60
           M EME+KIN LMK VEERD EIA LK Q++  E  ESS+TP ++  DKGKN++QE QP Q
Sbjct: 95  MVEMEKKINFLMKVVEERDHEIAALKDQMKAYETAESSKTPVVKATDKGKNVVQENQPQQ 154

Query: 61  LA-SVASLSVQQLQDTIMSFIRAQYGGPAQNPLTYSKPYTKRIDNLRMPTGYQPPKFQ 118
            + SVASLSVQQLQD I++ IRAQYGGP+Q    YSKPYTKRIDNLRMP GYQPPKFQ
Sbjct: 155 QSISVASLSVQQLQDMIVNSIRAQYGGPSQTSFMYSKPYTKRIDNLRMPLGYQPPKFQ 212

The following BLAST results are available for this feature:

BLAST of Tan0004240 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	5.6e-37	73.73	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	5.6e-37	73.73	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031737053.1	5.6e-37	73.73	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]
XP_031744658.1	5.6e-37	73.73	uncharacterized protein LOC116405107 [Cucumis sativus]	[more]
XP_031740568.1	5.6e-37	73.73	uncharacterized protein LOC116403508 [Cucumis sativus]	[more]

BLAST of Tan0004240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9K9	6.7e-36	70.34	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BZH8	5.7e-35	72.03	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VDN4	9.7e-35	69.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	1.3e-34	70.34	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DIN4	1.3e-34	69.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Tan0004240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004240.1	Tan0004240.1	mRNA