Tan0004129 (gene) Snake gourd v1

Overview


Name	Tan0004129
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG05: 38882194 .. 38883106 (+)
RNA-Seq Expression	Tan0004129
Synteny	Tan0004129

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACATGGAAAAAAAAACTCAACCCTATTTTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGCGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTGGCAAGTATGTCTGACATATTAACCAAGAAGCATGAGGGCATGATTACCGCAAAGGAAATCATGGATTCTGTGCAGGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGCTTTAAAGTACATATTCAACTCGAGGATGCTAGAGGGTACATCTGTTCGGGATCATGTTCTGGATATGATGGTACGCTTTAACATCGCAGAGTCGAATGGTGCTTCCATCGATGAGTCGAGCTAGGTCAGCTTCATTCTGGAAACCCTTCCAGGTAGTTTCTTGCAGTTTAGAAGTAATGCTGTTATGAACAAGCTTACTTTTAATCTTACCTCCCTTCTGAATGAACTCTAGACCTTTCAATCTTTGATGAAAATTCAGGGATCGAAAGGTGAAGAAGGTTGGTAAAGGGAAACAAGCTGACAAAGCTGCCGCCCAAAAGGGCAAGAAAGTCAAAGACGTTGCTGACAAAGGAAAGTGTTTCCACTGCAACGAAGACGGGCATTGGAAACGGAACTGTCCGAAGTACATTGCAGAAAAAAAGAAGGAAGATAAATATGATTTACTTTGCCTAGAAGCTTGTTTAGTGGATAATGATAAAACAACTTGGATACTTGATTCAGGCGCCACTAATCATGTTTGTTCTTCTTTTCAGGGAATTGATTCCTGGCAGCAGCTACAACAAGGAGAGATAACGCTCCGGGTTGGAAATGGAGAAGTCGTCTCATTTGAAAGCGATGAGGCACAATGA

mRNA sequence

ATGATGACATGGAAAAAAAAACTCAACCCTATTTTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGCGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTGGCAAGTATGTCTGACATATTAACCAAGAAGCATGAGGGCATGATTACCGCAAAGGAAATCATGGATTCTGTGCAGGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGCTTTAAAGTACATATTCAACTCGAGGATGCTAGAGGGTACATCTGTTCGGGATCATGTTCTGGATATGATGGTACGCTTTAACATCGCAGAGTCGAATGGTGCTTCCATCGATGAGGATCGAAAGGTGAAGAAGGTTGGTAAAGGGAAACAAGCTGACAAAGCTGCCGCCCAAAAGGGCAAGAAAGTCAAAGACGTTGCTGACAAAGGAAAGTGTTTCCACTGCAACGAAGACGGGCATTGGAAACGGAACTGTCCGAAGTACATTGCAGAAAAAAAGAAGGAAGATAAATATGATTTACTTTGCCTAGAAGCTTGTTTAGTGGATAATGATAAAACAACTTGGATACTTGATTCAGGCGCCACTAATCATGTTTGTTCTTCTTTTCAGGGAATTGATTCCTGGCAGCAGCTACAACAAGGAGAGATAACGCTCCGGGTTGGAAATGGAGAAGTCGTCTCATTTGAAAGCGATGAGGCACAATGA

Coding sequence (CDS)

ATGATGACATGGAAAAAAAAACTCAACCCTATTTTGGTAGTGGATGATCTGAAGTTTGTGCTAACTGAGGAGTGTCCTCAGGCGCCAGGCTCGAATGCGTCACGAAATGTTCGTGATGCATATGATCGATGGATCAAGGCCAATGATAAGGCCAAGGTCTACATGCTGGCAAGTATGTCTGACATATTAACCAAGAAGCATGAGGGCATGATTACCGCAAAGGAAATCATGGATTCTGTGCAGGGTATGTTTGGACAACAGTCCACACAAGCCCGACATAATGCTTTAAAGTACATATTCAACTCGAGGATGCTAGAGGGTACATCTGTTCGGGATCATGTTCTGGATATGATGGTACGCTTTAACATCGCAGAGTCGAATGGTGCTTCCATCGATGAGGATCGAAAGGTGAAGAAGGTTGGTAAAGGGAAACAAGCTGACAAAGCTGCCGCCCAAAAGGGCAAGAAAGTCAAAGACGTTGCTGACAAAGGAAAGTGTTTCCACTGCAACGAAGACGGGCATTGGAAACGGAACTGTCCGAAGTACATTGCAGAAAAAAAGAAGGAAGATAAATATGATTTACTTTGCCTAGAAGCTTGTTTAGTGGATAATGATAAAACAACTTGGATACTTGATTCAGGCGCCACTAATCATGTTTGTTCTTCTTTTCAGGGAATTGATTCCTGGCAGCAGCTACAACAAGGAGAGATAACGCTCCGGGTTGGAAATGGAGAAGTCGTCTCATTTGAAAGCGATGAGGCACAATGA

Protein sequence

MMTWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDILTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFNIAESNGASIDEDRKVKKVGKGKQADKAAAQKGKKVKDVADKGKCFHCNEDGHWKRNCPKYIAEKKKEDKYDLLCLEACLVDNDKTTWILDSGATNHVCSSFQGIDSWQQLQQGEITLRVGNGEVVSFESDEAQ

Homology

[Close]

BLAST of Tan0004129 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 308.9 bits (790), Expect = 4.0e-80
Identity = 168/322 (52.17%), Postives = 202/322 (62.73%), Query Frame = 0


Query: 4   WKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDIL 63
           WK  LN ILVVDDL+FVLTEECPQAP  NA+R VR+AYDRW+KANDKA+VY+LASM+D+L
Sbjct: 22  WKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYILASMTDVL 81

Query: 64  TKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFNI 123
            KKH+ + TAK IMDS++ MFGQ S   RH A+K+I+  RM EGTSVR+HVLDMM+ FNI
Sbjct: 82  AKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNI 141

Query: 124 AESNGASIDEDRKVK---------------------------------------KVGKGK 183
           AE NG  IDE  +V                                         + KGK
Sbjct: 142 AEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLTLSKGK 201

Query: 184 QADKAAA------------------------QKGK-------KVKDVADKGKCFHCNEDG 243
           + +   A                        +KGK       KVK  ADKGKCFHCN+DG
Sbjct: 202 EVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKKNADKGKCFHCNQDG 261

Query: 244 HWKRNCPKYIAEKKKE----DKYDLLCLEACLVDNDKTTWILDSGATNHVCSSFQGIDSW 252
           HWKRNCPKY+AEKK E     KYDLL +E CLV+ D +TWILDSGATNH+C SFQ   SW
Sbjct: 262 HWKRNCPKYLAEKKAEKATQGKYDLLVVETCLVECDASTWILDSGATNHICFSFQETSSW 321

[Close]

BLAST of Tan0004129 vs. NCBI nr
Match: KAA0044955.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 307.8 bits (787), Expect = 9.0e-80
Identity = 163/329 (49.54%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79
Identity = 162/329 (49.24%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. NCBI nr
Match: KAA0054490.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79
Identity = 162/329 (49.24%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. NCBI nr
Match: KAA0035879.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051221.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0051893.1 gag/pol protein [Cucumis melo var. makuwa] >TYK00551.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 2.6e-79
Identity = 162/329 (49.24%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 2.0e-80
Identity = 168/322 (52.17%), Postives = 202/322 (62.73%), Query Frame = 0


Query: 4   WKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDIL 63
           WK  LN ILVVDDL+FVLTEECPQAP  NA+R VR+AYDRW+KANDKA+VY+LASM+D+L
Sbjct: 22  WKSNLNTILVVDDLRFVLTEECPQAPALNANRTVREAYDRWVKANDKARVYILASMTDVL 81

Query: 64  TKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFNI 123
            KKH+ + TAK IMDS++ MFGQ S   RH A+K+I+  RM EGTSVR+HVLDMM+ FNI
Sbjct: 82  AKKHDSIATAKGIMDSLREMFGQPSWSLRHEAIKHIYTKRMKEGTSVREHVLDMMMHFNI 141

Query: 124 AESNGASIDEDRKVK---------------------------------------KVGKGK 183
           AE NG  IDE  +V                                         + KGK
Sbjct: 142 AEVNGGPIDEANQVSFILQSLPKSFVPFQTNASLNKIEFNLTTLLNELQRFQNLTLSKGK 201

Query: 184 QADKAAA------------------------QKGK-------KVKDVADKGKCFHCNEDG 243
           + +   A                        +KGK       KVK  ADKGKCFHCN+DG
Sbjct: 202 EVEANVAVTKRKFIRGSSSKNKVGPSKAQMKKKGKGKAPNTSKVKKNADKGKCFHCNQDG 261

Query: 244 HWKRNCPKYIAEKKKE----DKYDLLCLEACLVDNDKTTWILDSGATNHVCSSFQGIDSW 252
           HWKRNCPKY+AEKK E     KYDLL +E CLV+ D +TWILDSGATNH+C SFQ   SW
Sbjct: 262 HWKRNCPKYLAEKKAEKATQGKYDLLVVETCLVECDASTWILDSGATNHICFSFQETSSW 321

[Close]

BLAST of Tan0004129 vs. ExPASy TrEMBL
Match: A0A5A7TU93 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002590 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 4.3e-80
Identity = 163/329 (49.54%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 162/329 (49.24%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 162/329 (49.24%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKTK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

[Close]

BLAST of Tan0004129 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 1.3e-79
Identity = 162/329 (49.24%), Postives = 204/329 (62.01%), Query Frame = 0


Query: 3   TWKKKLNPILVVDDLKFVLTEECPQAPGSNASRNVRDAYDRWIKANDKAKVYMLASMSDI 62
           +WK  +N +L++DDL+FVL EECPQ P +NA+R VR+ Y+RW KAN+KA+ Y+LAS+S++
Sbjct: 21  SWKNTINTVLIIDDLRFVLVEECPQVPAANATRTVREPYERWAKANEKARAYILASLSEV 80

Query: 63  LTKKHEGMITAKEIMDSVQGMFGQQSTQARHNALKYIFNSRMLEGTSVRDHVLDMMVRFN 122
           L KKHE M+TA+EIMDS+Q MFGQ S Q +H+ALKYI+N+RM EG SVR+HVL+MMV FN
Sbjct: 81  LAKKHESMLTAREIMDSLQEMFGQASYQIKHDALKYIYNARMNEGASVREHVLNMMVHFN 140

Query: 123 IAESNGASIDEDRKV--------------------------------------------- 182
           +AE NGA IDE  +V                                             
Sbjct: 141 VAEMNGAVIDEASQVSFILESLPESFLQFRSNAVMNKIAYTLTTLLNELQTFESLMKIKG 200

Query: 183 ------------------------------------KKVGKGKQADKAAAQKGKKVKDVA 242
                                               KK G+G +A+ AAA+  KK K  A
Sbjct: 201 QKGEANVATSTRKFHRGSTSGTKSMPSSSGNKKWKKKKGGQGNKANLAAAKTTKKAK--A 260

Query: 243 DKGKCFHCNEDGHWKRNCPKYIAEKK--KEDKYDLLCLEACLVDNDKTTWILDSGATNHV 249
            KG CFHCN++GHWKRNCPKY+AEKK  K+ KYDLL LE CLV+ND + WI+DSGATNHV
Sbjct: 261 AKGICFHCNQEGHWKRNCPKYLAEKKKAKQGKYDLLVLETCLVENDDSAWIIDSGATNHV 320

The following BLAST results are available for this feature:

BLAST of Tan0004129 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004129 vs. NCBI nr


Match Name	E-value	Identity	Description
ADJ18449.1	4.0e-80	52.17	gag/pol protein, partial [Bryonia dioica]	[more]
KAA0044955.1	9.0e-80	49.54	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.6e-79	49.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054490.1	2.6e-79	49.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035879.1	2.6e-79	49.24	gag/pol protein [Cucumis melo var. makuwa] >KAA0044276.1 gag/pol protein [Cucumi...	[more]

BLAST of Tan0004129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E2GK51	2.0e-80	52.17	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TU93	4.3e-80	49.54	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00259...	[more]
A0A5A7SMH8	1.3e-79	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.3e-79	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	1.3e-79	49.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]

BLAST of Tan0004129 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 165..181 e-value: 0.0017 score: 27.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 164..181 e-value: 2.5E-5 score: 24.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 165..181 score: 9.965892
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 44..138 e-value: 6.2E-9 score: 35.7
None	No IPR available	GENE3D	4.10.60.10		coord: 139..194 e-value: 5.4E-9 score: 37.8
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..139
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..139
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 161..185

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004129.1	Tan0004129.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding