Tan0004101 (gene) Snake gourd v1

Overview


Name	Tan0004101
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Gag/pol protein
Location	LG09: 39007589 .. 39007912 (+)
RNA-Seq Expression	Tan0004101
Synteny	Tan0004101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGTCCTCGATAATAGCCTTACTCAAATGCGAACGCTTAACTGGCAAAAATTATACTACGTGGAAGTCCAACCTGAATATGATTCTGGTTGTTGACGACCTTCGATTTGTACTAACTGAGGAATATCCTCAGGTCCCTGCTCGAAACGCTCCTCAATCTGTTAAGGATGCGTACGACTGTTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTAAAGTTCTTGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAATATGTTTGGACAACCGTCTGGATAG

mRNA sequence

ATGTCGTCCTCGATAATAGCCTTACTCAAATGCGAACGCTTAACTGGCAAAAATTATACTACGTGGAAGTCCAACCTGAATATGATTCTGGTTGTTGACGACCTTCGATTTGTACTAACTGAGGAATATCCTCAGGTCCCTGCTCGAAACGCTCCTCAATCTGTTAAGGATGCGTACGACTGTTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTAAAGTTCTTGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAATATGTTTGGACAACCGTCTGGATAG

Coding sequence (CDS)

ATGTCGTCCTCGATAATAGCCTTACTCAAATGCGAACGCTTAACTGGCAAAAATTATACTACGTGGAAGTCCAACCTGAATATGATTCTGGTTGTTGACGACCTTCGATTTGTACTAACTGAGGAATATCCTCAGGTCCCTGCTCGAAACGCTCCTCAATCTGTTAAGGATGCGTACGACTGTTGGATCAAGGCCAATGACAAGGCCAAGGTCTACATTTTGGCTAGTGTTTCTAAAGTTCTTGCCAAAAAGCACGAGGGCATGGTCTCAGCTCGTGAGATCATGAGTTCGTTGCAGAATATGTTTGGACAACCGTCTGGATAG

Protein sequence

MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYDCWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPSG

Homology

[Close]

BLAST of Tan0004101 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
            W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ MFGQPS
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.6e-33
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
            W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ MFGQPS
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. NCBI nr
Match: KAA0067938.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 7.7e-33
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MS SIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P + A QSV+DAYD
Sbjct: 1   MSCSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTKYASQSVRDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
           CW KANDKA ++ILAS+S +L+KKHE MV+AR+IM SL+ MFGQPS
Sbjct: 61  CWTKANDKAHLHILASISDILSKKHEIMVTARQIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. NCBI nr
Match: KAA0050233.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ98173.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 71/106 (66.98%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           M++SI+ LL  ++L G NY TWKSNLN ILV+DDLRFVLTEE PQ PA NA Q+V++AYD
Sbjct: 1   MNNSIVQLLASQKLNGDNYATWKSNLNKILVIDDLRFVLTEERPQTPASNANQNVREAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
            W+KAN+KA+VYI AS+S VLAKKHE + +A+EIM SL+ MFGQPS
Sbjct: 61  RWVKANEKARVYIFASMSDVLAKKHESLATAKEIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. NCBI nr
Match: KAA0058365.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK23412.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 150.2 bits (378), Expect = 1.0e-32
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTG+NY TWK  LNMILV+ DLRFVL EE P  P++NA QSVKD YD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKLKLNMILVITDLRFVLIEECPPFPSQNASQSVKDGYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
           CW KANDKA++YILAS+S +L+KKH  MV+AR+IM SL+ MFGQ S
Sbjct: 61  CWTKANDKARLYILASMSNILSKKHGIMVTARQIMKSLKEMFGQSS 106

[Close]

BLAST of Tan0004101 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
            W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ MFGQPS
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.3e-33
Identity = 76/106 (71.70%), Postives = 89/106 (83.96%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P +NA QSVKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
            W KANDKA +Y+LAS+S +L+KKHE MV+AR+IM SL+ MFGQPS
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. ExPASy TrEMBL
Match: A0A5A7VJG3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001110 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 3.7e-33
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MS SIIALLK ++LTG+NY TWKS LNMILV+ DLRFVL EE P  P + A QSV+DAYD
Sbjct: 1   MSCSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTKYASQSVRDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
           CW KANDKA ++ILAS+S +L+KKHE MV+AR+IM SL+ MFGQPS
Sbjct: 61  CWTKANDKAHLHILASISDILSKKHEIMVTARQIMDSLREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. ExPASy TrEMBL
Match: A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-33
Identity = 72/106 (67.92%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTGKNY TWKS LNMILV+ DLR +L E+ P  P++NA QSVKDAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
           CW K NDKA++YIL S+  +L+KKHE MV+AR+IM S++ MFGQPS
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPS 106

[Close]

BLAST of Tan0004101 vs. ExPASy TrEMBL
Match: A0A5D3DIM3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00090 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.9e-33
Identity = 74/106 (69.81%), Postives = 88/106 (83.02%), Query Frame = 0


Query: 1   MSSSIIALLKCERLTGKNYTTWKSNLNMILVVDDLRFVLTEEYPQVPARNAPQSVKDAYD 60
           MSSSIIALLK ++LTG+NY TWK  LNMILV+ DLRFVL EE P  P++NA QSVKD YD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKLKLNMILVITDLRFVLIEECPPFPSQNASQSVKDGYD 60

Query: 61  CWIKANDKAKVYILASVSKVLAKKHEGMVSAREIMSSLQNMFGQPS 107
           CW KANDKA++YILAS+S +L+KKH  MV+AR+IM SL+ MFGQ S
Sbjct: 61  CWTKANDKARLYILASMSNILSKKHGIMVTARQIMKSLKEMFGQSS 106

The following BLAST results are available for this feature:

BLAST of Tan0004101 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0004101 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	2.6e-33	71.70	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	2.6e-33	71.70	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0067938.1	7.7e-33	69.81	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0050233.1	1.0e-32	66.98	gag/pol protein [Cucumis melo var. makuwa] >TYJ98173.1 gag/pol protein [Cucumis ...	[more]
KAA0058365.1	1.0e-32	69.81	gag/pol protein [Cucumis melo var. makuwa] >TYK23412.1 gag/pol protein [Cucumis ...	[more]

BLAST of Tan0004101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	1.3e-33	71.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	1.3e-33	71.70	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5A7VJG3	3.7e-33	69.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G0011...	[more]
A0A5D3DQJ2	4.9e-33	67.92	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033...	[more]
A0A5D3DIM3	4.9e-33	69.81	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G000...	[more]

BLAST of Tan0004101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35317:SF16	ZINC FINGER, CCHC-TYPE-RELATED	coord: 7..105
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 7..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004101.1	Tan0004101.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding