Tan0004073 (gene) Snake gourd v1

Overview


Name	Tan0004073
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	LG09: 55357740 .. 55359395 (+)
RNA-Seq Expression	Tan0004073
Synteny	Tan0004073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGTTGCTCTACCATGGGTCTAATTGCAGACTGTAAACGTTGAAGGTTGGGCGTTTTTCAGTGGATCGTGATTTTTCCTTTCGAGAAGCAAGGTTGTATTTCTCCTCATCTTAATTTCTTTCTAGTTAGTTTAGATTCAAGATTTAATCCCAAAGATTGTTAGACTCCCAATCTTGAATAAAGTTTGGTTGTAGTCTCTCTTTGGGCATAAATTTTGGAATCTTGTTAAATCCTAAATGTTAAATGTATCTTTAGATATCCTGCTGTAAATTCTCTGTATTCTCCCGTATATCTCTAATAAACTGTCTAGCAAAGGCTTAAAACACCTTTGCAAGTGGAGTAGGTCGTTTTATGACCGAACCATTATAAATATTGGTGCTCTTTGATTGTTCTTTACTGTTTCTGCACAAGTTTAAATTCTGTCCAACCCTTAAATTGTTTAAAAATCGCTTATAAACTTGTTGTAAACACCTCAAACTTGTCTAAAATTGGTTAGACATAGGATTTGGATCTTGACATATAATAACATTTTGGTATCAGAGCTTTTAATCCTTGTTTTTAGGGCATTCTTTCTTGAATTAAAATTTAGTTTGTTGAATAAAATCTTTGGGTTTAAAGAATCTTTAAGTTGTTAGTATTCTTTAATTCTGATTTTTTTTATTTCAAGAAAAGTTTGCTGTCCAATTTTGTTTCTCATTTTTCAGGATGAGTACCAAGTTCGAGGTGGAGCGGTTTGATGGGAAAGAAGATTTTGGTCTATGGAAGATCAAAATGTTGGCCATCCTTCGTCAACAAAAGGTCGATTATGCACTTTTGGAGGCTAAGGATATTCCAGACAGCATAATAACGGACAAACTGAAAGAGATAAATAAGGTAGCTCACAGCCTTATAATCCTTTATTTGTCTGATACAATTATAAGACAAATGCGTAGTGAAGATACTGTTATTAAACTTTGGACAAAATTAGAATCTACCTACCAAGTCGCATCAATTTCAAGCAAAATATTTTTAAAATCTAATTTCTTTAGTTTTAAAATGGACTCTAGTAAAAGCATGAAGGATAACCTAGATGAATTCCATAGAGTAGTTTTTGAAATGGAAAATATTGGTGAAATCTTTTCTGATGAAAATCATGCTGTAGTTCTGATAAATTCTTTGCCTGAATCTTATAATGATGTGAAATCTGCTATGAAGTTTGGTAGGGATACTTTGTCAACTGAAATTGTCTTAAATGCCATTAGAGTAAAAGAATAAGAACTAAAAGAAACCAAGAAGTCTAATAGTGAGACTTTGTACGTTAGAGGGAGATCAGAGAATAAGAAAAAGTATAGAAGCAAGAGTAGGGGTAGATCAAAGTCTAAGGGGGCTAGTAATAGGAGGTGTTATCATTGTAAAAAAGAAGGCCACATTAGAAGGTTTTGTCCTGACCTTAGGAATAAAAAGTCGTCGGGTAAAGGGAAAGAGGAGTCTAGTGTAGTAAACCTTAGTGAAGAGTATAACCACTCTCTTATGGTTAGTAACACTAGAGAGGATGACACTTGGATCCTAGATTCAGGTTGTTCTTTCCATATGACCCCTAATAGAGAATGGATAGAAGACTTCCAAACCGGTGTGGGAGGTAAAGTCATGTTAGGGAACCGACACTTTTGTAGTGTAG

mRNA sequence

AGTTGCTCTACCATGGGTCTAATTGCAGACTGTAAACGTTGAAGGTTGGGCGTTTTTCAGTGGATCGTGATTTTTCCTTTCGAGAAGCAAGGTTGTATTTCTCCTCATCTTAATTTCTTTCTAGTTAGTTTAGATTCAAGATTTAATCCCAAAGATTGTTAGACTCCCAATCTTGAATAAAGTTTGGTTGTAGTCTCTCTTTGGGCATAAATTTTGGAATCTTGTTAAATCCTAAATGTTAAATGTATCTTTAGATATCCTGCTGTAAATTCTCTGTATTCTCCCGTATATCTCTAATAAACTGTCTAGCAAAGGCTTAAAACACCTTTGCAAGTGGAGTAGGTCGTTTTATGACCGAACCATTATAAATATTGGTGCTCTTTGATTGTTCTTTACTGTTTCTGCACAAGTTTAAATTCTGTCCAACCCTTAAATTGTTTAAAAATCGCTTATAAACTTGTTGTAAACACCTCAAACTTGTCTAAAATTGGTTAGACATAGGATTTGGATCTTGACATATAATAACATTTTGGTATCAGAGCTTTTAATCCTTGTTTTTAGGGCATTCTTTCTTGAATTAAAATTTAGTTTGTTGAATAAAATCTTTGGGTTTAAAGAATCTTTAAGTTGTTAGTATTCTTTAATTCTGATTTTTTTTATTTCAAGAAAAGTTTGCTGTCCAATTTTGTTTCTCATTTTTCAGGATGAGTACCAAGTTCGAGGTGGAGCGGTTTGATGGGAAAGAAGATTTTGGTCTATGGAAGATCAAAATGTTGGCCATCCTTCGTCAACAAAAGGTCGATTATGCACTTTTGGAGGCTAAGGATATTCCAGACAGCATAATAACGGACAAACTGAAAGAGATAAATAAGGTAGCTCACAGCCTTATAATCCTTTATTTGTCTGATACAATTATAAGACAAATGCGTAGTGAAGATACTGTTATTAAACTTTGGACAAAATTAGAATCTACCTACCAAGTCGCATCAATTTCAAGCAAAATATTTTTAAAATCTAATTTCTTTAGTTTTAAAATGGACTCTAGTAAAAGCATGAAGGATAACCTAGATGAATTCCATAGAGTAGTTTTTGAAATGGAAAATATTGGTGAAATCTTTTCTGATGAAAATCATGCTGTAGTTCTGATAAATTCTTTGCCTGAATCTTATAATGATGTGAAATCTGCTATGAAGTTTGGTAGGGATACTTTGTCAACTGAAATTGTCTTAAATGCCATTAGAGTAAAAGAATAAGAACTAAAAGAAACCAAGAAGTCTAATAGTGAGACTTTGTACGTTAGAGGGAGATCAGAGAATAAGAAAAAGTATAGAAGCAAGAGTAGGGGTAGATCAAAGTCTAAGGGGGCTAGTAATAGGAGGTGTTATCATTGTAAAAAAGAAGGCCACATTAGAAGGTTTTGTCCTGACCTTAGGAATAAAAAGTCGTCGGGTAAAGGGAAAGAGGAGTCTAGTGTAGTAAACCTTAGTGAAGAGTATAACCACTCTCTTATGGTTAGTAACACTAGAGAGGATGACACTTGGATCCTAGATTCAGGTTGTTCTTTCCATATGACCCCTAATAGAGAATGGATAGAAGACTTCCAAACCGGTGTGGGAGGTAAAGTCATGTTAGGGAACCGACACTTTTGTAGTGTAG

Coding sequence (CDS)

ATGAGTACCAAGTTCGAGGTGGAGCGGTTTGATGGGAAAGAAGATTTTGGTCTATGGAAGATCAAAATGTTGGCCATCCTTCGTCAACAAAAGGTCGATTATGCACTTTTGGAGGCTAAGGATATTCCAGACAGCATAATAACGGACAAACTGAAAGAGATAAATAAGGTAGCTCACAGCCTTATAATCCTTTATTTGTCTGATACAATTATAAGACAAATGCGTAGTGAAGATACTGTTATTAAACTTTGGACAAAATTAGAATCTACCTACCAAGTCGCATCAATTTCAAGCAAAATATTTTTAAAATCTAATTTCTTTAGTTTTAAAATGGACTCTAGTAAAAGCATGAAGGATAACCTAGATGAATTCCATAGAGTAGTTTTTGAAATGGAAAATATTGGTGAAATCTTTTCTGATGAAAATCATGCTGTAGTTCTGATAAATTCTTTGCCTGAATCTTATAATGATGTGAAATCTGCTATGAAGTTTGGTAGGGATACTTTGTCAACTGAAATTGTCTTAAATGCCATTAGAGTAAAAGAATAA

Protein sequence

MSTKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSLIILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNLDEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVKE

Homology

[Close]

BLAST of Tan0004073 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.2e-20
Identity = 52/179 (29.05%), Postives = 105/179 (58.66%), Query Frame = 0


Query: 4   KFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSLII 63
           K+EV +F+G   F  W+ +M  +L QQ +   L      PD++  +   ++++ A S I 
Sbjct: 5   KYEVAKFNGDNGFSTWQRRMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIR 64

Query: 64  LYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNLDE 123
           L+LSD ++  +  EDT   +WT+LES Y   ++++K++LK   ++  M    +   +L+ 
Sbjct: 65  LHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNV 124

Query: 124 FHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVKE 183
           F+ ++ ++ N+G    +E+ A++L+NSLP SY+++ + +  G+ T+  + V +A+ + E
Sbjct: 125 FNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNE 183

[Close]

BLAST of Tan0004073 vs. NCBI nr
Match: TXG48538.1 (hypothetical protein EZV62_024413 [Acer yangbiense])

HSP 1 Score: 179.9 bits (455), Expect = 2.0e-41
Identity = 93/184 (50.54%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   MSTKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHS 60
           +STKF++E+F+GK DFG+W+ KM AIL QQK   AL E KD+P S+  ++ +++ + A+S
Sbjct: 2   VSTKFKIEKFNGKGDFGMWRKKMKAILVQQKCVKALEEEKDLPISLSAEEKQDLLETAYS 61

Query: 61  LIILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDN 120
            IIL L+D ++RQ+  EDT  K+W KLES Y   S+S KI+LK   F FKMD SKS++DN
Sbjct: 62  TIILNLADNVLRQVNDEDTAAKVWIKLESFYMNKSLSGKIYLKEQLFGFKMDQSKSLEDN 121

Query: 121 LDEFHRVVFEMENIG--EIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAI 180
           LD+F ++  E+ N    E  SDEN A+++ NSL  SY D+K+A+K+GRD+LS E VL A+
Sbjct: 122 LDDFSKLNIELANSDSKEALSDENQAIIVFNSLSNSYKDLKAAIKYGRDSLSLEDVLRAL 181

Query: 181 RVKE 183
           R +E
Sbjct: 182 RSRE 185

[Close]

BLAST of Tan0004073 vs. NCBI nr
Match: PON64464.1 (hypothetical protein TorRG33x02_273130 [Trema orientale])

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-40
Identity = 84/178 (47.19%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ++K E+E+FDGK DF +WK KM A+L QQK    L +A  +P+++   + +E+ + A+SL
Sbjct: 3   TSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAYSL 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           +IL L+D ++RQ+  +DT  K+W+KL+S Y   ++S+KI+LK   F FKMDS+KS++DNL
Sbjct: 63  LILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLEDNL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIR 180
           D+F R+   + NI E  +DEN A++++NSLPESY D+KS +K+GR++LS + VL A+R
Sbjct: 123 DDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIKYGRESLSLDDVLRALR 180

[Close]

BLAST of Tan0004073 vs. NCBI nr
Match: TYK25306.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 2.9e-40
Identity = 86/180 (47.78%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ST+FEV +F+G  DF LW+ K+ AIL Q KV   +L+ + +PD+I   + ++++++A+S 
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKV-AKILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           I+LYLSD ++R +    T  +LW KLES Y   S+ +KI++K  FF +KMD SKS+++NL
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVK 181
           DEF ++V ++ NIGE  SDEN AV+L+NSLPE+Y +VK+A+K+GRD+L+  IVL+A++ +
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 181

[Close]

BLAST of Tan0004073 vs. NCBI nr
Match: KAA0050719.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 175.6 bits (444), Expect = 3.8e-40
Identity = 86/180 (47.78%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ST+FEV +F+G  DF LW+ K+ AIL Q KV   +L+ + +PD+I   + ++++++A+S 
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKV-AKILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           I+LYLSD ++R +    T  +LW KLES Y   S+ +KI++K  FF +KMD SKS+++NL
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVK 181
           DEF ++V ++ NIGE  SDEN AV+L+NSLPE+Y +VK+A+K+GRD+L+  IVL+A++ +
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 181

[Close]

BLAST of Tan0004073 vs. NCBI nr
Match: KAA0050070.1 (putative polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 172.2 bits (435), Expect = 4.2e-39
Identity = 82/180 (45.56%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ST+FEV +F+G  DF LW+ K+ AIL Q KV   +L+ + +P++I   + ++++++ +S 
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKV-AKILDEERLPENITESEKRDMDEMTYST 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           I+LYLSD ++R +    T+ +LW KLES Y   S+S+KI++K  FF +KMD SK +++NL
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVK 181
           DEF +++ ++ NIGE  SDEN AV+L+NSLPE Y +VK+A+K+GRD+L+  I+L+A++ +
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 181

[Close]

BLAST of Tan0004073 vs. ExPASy TrEMBL
Match: A0A5C7GV29 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024413 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 9.8e-42
Identity = 93/184 (50.54%), Postives = 132/184 (71.74%), Query Frame = 0


Query: 1   MSTKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHS 60
           +STKF++E+F+GK DFG+W+ KM AIL QQK   AL E KD+P S+  ++ +++ + A+S
Sbjct: 2   VSTKFKIEKFNGKGDFGMWRKKMKAILVQQKCVKALEEEKDLPISLSAEEKQDLLETAYS 61

Query: 61  LIILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDN 120
            IIL L+D ++RQ+  EDT  K+W KLES Y   S+S KI+LK   F FKMD SKS++DN
Sbjct: 62  TIILNLADNVLRQVNDEDTAAKVWIKLESFYMNKSLSGKIYLKEQLFGFKMDQSKSLEDN 121

Query: 121 LDEFHRVVFEMENIG--EIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAI 180
           LD+F ++  E+ N    E  SDEN A+++ NSL  SY D+K+A+K+GRD+LS E VL A+
Sbjct: 122 LDDFSKLNIELANSDSKEALSDENQAIIVFNSLSNSYKDLKAAIKYGRDSLSLEDVLRAL 181

Query: 181 RVKE 183
           R +E
Sbjct: 182 RSRE 185

[Close]

BLAST of Tan0004073 vs. ExPASy TrEMBL
Match: A0A2P5CTT8 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.8e-41
Identity = 84/178 (47.19%), Postives = 131/178 (73.60%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ++K E+E+FDGK DF +WK KM A+L QQK    L +A  +P+++   + +E+ + A+SL
Sbjct: 3   TSKIEIEKFDGKGDFNMWKKKMKAVLVQQKCAKVLGDASGLPETMKPSEKEELLETAYSL 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           +IL L+D ++RQ+  +DT  K+W+KL+S Y   ++S+KI+LK   F FKMDS+KS++DNL
Sbjct: 63  LILNLADNVLRQVDEQDTAAKVWSKLDSLYLTKTLSNKIYLKEQLFGFKMDSTKSLEDNL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIR 180
           D+F R+   + NI E  +DEN A++++NSLPESY D+KS +K+GR++LS + VL A+R
Sbjct: 123 DDFKRITVSLANIDEKINDENQAIIILNSLPESYKDLKSTIKYGRESLSLDDVLRALR 180

[Close]

BLAST of Tan0004073 vs. ExPASy TrEMBL
Match: A0A5D3DNU1 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004440 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.4e-40
Identity = 86/180 (47.78%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ST+FEV +F+G  DF LW+ K+ AIL Q KV   +L+ + +PD+I   + ++++++A+S 
Sbjct: 3   STRFEVSKFNGHGDFALWRKKIRAILVQHKV-AKILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           I+LYLSD ++R +    T  +LW KLES Y   S+ +KI++K  FF +KMD SKS+++NL
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLPNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVK 181
           DEF ++V ++ NIGE  SDEN AV+L+NSLPE+Y +VK+A+K+GRD+L+  IVL+A++ +
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 181

[Close]

BLAST of Tan0004073 vs. ExPASy TrEMBL
Match: A0A5A7UB25 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00190 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.8e-40
Identity = 86/180 (47.78%), Postives = 134/180 (74.44%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ST+FEV +F+G  DF LW+ K+ AIL Q KV   +L+ + +PD+I   + ++++++A+S 
Sbjct: 3   STRFEVSKFNGHGDFSLWRKKIRAILVQHKV-AKILDEERLPDNITESEKRDMDEMAYST 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           I+LYLSD ++R +    T  +LW KLES Y   S+ +KI++K  FF +KMD SKS+++NL
Sbjct: 63  ILLYLSDEVLRLVDEATTTGELWKKLESLYLTKSLLNKIYIKEKFFGYKMDQSKSLEENL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVK 181
           DEF ++V ++ NIGE  SDEN AV+L+NSLPE+Y +VK+A+K+GRD+L+  IVL+A++ +
Sbjct: 123 DEFQKIVVDLNNIGEKMSDENQAVILLNSLPETYREVKAAIKYGRDSLTMSIVLDALKTR 181

[Close]

BLAST of Tan0004073 vs. ExPASy TrEMBL
Match: A0A5A7U459 (Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00520 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 2.0e-39
Identity = 82/180 (45.56%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 2   STKFEVERFDGKEDFGLWKIKMLAILRQQKVDYALLEAKDIPDSIITDKLKEINKVAHSL 61
           ST+FEV +F+G  DF LW+ K+ AIL Q KV   +L+ + +P++I   + ++++++ +S 
Sbjct: 3   STRFEVSKFNGNGDFALWRKKIRAILVQHKV-AKILDEERLPENITESEKRDMDEMTYST 62

Query: 62  IILYLSDTIIRQMRSEDTVIKLWTKLESTYQVASISSKIFLKSNFFSFKMDSSKSMKDNL 121
           I+LYLSD ++R +    T+ +LW KLES Y   S+S+KI++K  FF +KMD SK +++NL
Sbjct: 63  ILLYLSDEVLRLVDEATTIGELWKKLESLYMKKSLSNKIYIKEKFFGYKMDQSKGLEENL 122

Query: 122 DEFHRVVFEMENIGEIFSDENHAVVLINSLPESYNDVKSAMKFGRDTLSTEIVLNAIRVK 181
           DEF +++ ++ NIGE  SDEN AV+L+NSLPE Y +VK+A+K+GRD+L+  I+L+A++ +
Sbjct: 123 DEFQKIIVDLNNIGEKMSDENQAVILLNSLPEIYREVKAAIKYGRDSLNMSIMLDALKTR 181

The following BLAST results are available for this feature:

BLAST of Tan0004073 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.2e-20	29.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Tan0004073 vs. NCBI nr


Match Name	E-value	Identity	Description
TXG48538.1	2.0e-41	50.54	hypothetical protein EZV62_024413 [Acer yangbiense]	[more]
PON64464.1	1.0e-40	47.19	hypothetical protein TorRG33x02_273130 [Trema orientale]	[more]
TYK25306.1	2.9e-40	47.78	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050719.1	3.8e-40	47.78	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0050070.1	4.2e-39	45.56	putative polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0004073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GV29	9.8e-42	50.54	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_024413 PE=4 SV=1	[more]
A0A2P5CTT8	4.8e-41	47.19	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_273130 PE=4 SV...	[more]
A0A5D3DNU1	1.4e-40	47.78	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7UB25	1.8e-40	47.78	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7U459	2.0e-39	45.56	Putative polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675...	[more]

BLAST of Tan0004073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 53..178 e-value: 5.3E-29 score: 100.7
None	No IPR available	PANTHER	PTHR34676:SF12	ZINC FINGER, CCHC-TYPE, RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN PROTEIN-RELATED	coord: 1..161
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..161

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0004073.1	Tan0004073.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0046872	metal ion binding