Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGTACTGCGGTTAATAAAATCCTAGAAAGAGGTAAAAAAAATCAACATTGAGAGGCATAGTGAAACTGCCACAACAGAATACAAGTTGTGGTATGAGACTTATCGAATGATCCATACAACTCAAAAAAGGAAAAAAGGTTTCTAAACAAGAATATAGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAGATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAGAATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACGTAAGAATTATTGACCTAGAAAACAAAATCGTTTTCTTCCAAAAGTTTGTTTCTGAATTAAACACTTCAATCGATGCGTGAACTAAGCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGATTCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA
mRNA sequence
ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGAAAAAAGGTTTCTAAACAAGAATATAGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAGATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAGAATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGATTCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA
Coding sequence (CDS)
ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGAAAAAAGGTTTCTAAACAAGAATATAGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAGATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAGAATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGATTCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA
Protein sequence
MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKYGALLSNQANI
Homology
BLAST of Tan0003978 vs. NCBI nr
Match:
KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 53/172 (30.81%), Postives = 89/172 (51.74%), Query Frame = 0
Query: 1 MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQL 60
+W +QF+P H+ + DF Y+ E K+ + N+ I+ I L+E+N+L
Sbjct: 312 VWLKQFIPPTHNLQESDFSYDPEDCQGKKTSSIERGKETSFEQPNQWIEKSIELEEKNRL 371
Query: 61 FHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRM 120
+ NEKL +E +QW A + L +T+ LKNQ +LEK+ + LD E R++++ R +
Sbjct: 372 LEQENEKLRKETSQWMDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSL 431
Query: 121 KNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ 154
KN+K Q + +D+ I+ EN L T+I E +I ++ Q
Sbjct: 432 KNEKTTFQATMGSQDEYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQ 483
BLAST of Tan0003978 vs. NCBI nr
Match:
KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 65.9 bits (159), Expect = 4.1e-07
Identity = 55/213 (25.82%), Postives = 94/213 (44.13%), Query Frame = 0
Query: 1 MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL--------------------------- 60
+W +QF+P H+ +FDF Y+ E K+++ +
Sbjct: 248 VWLKQFIPPTHNLQEFDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQA 307
Query: 61 -------------------------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQA 120
N+ I+ I L+E+N+L + NEKL +E +QW A
Sbjct: 308 NRRKNIIDISREVVERGKKTSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHA 367
Query: 121 VETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIE 154
+ +L +T+ LKNQ +LEK+ + LD E R++++ R +KN+K LQ + +D+ I+
Sbjct: 368 TYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQDEYIK 427
BLAST of Tan0003978 vs. NCBI nr
Match:
TYK23632.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = 0
Query: 23 ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLL 82
E+S ++ +++ K+I+ L+E+N+L + NEKL +E +QW A + +L +T+ L
Sbjct: 57 ETSFEQPNQWIEKSIE----LEEKNRLLEQENEKLRKETSQWIDHATYLQNELEKTKSFL 116
Query: 83 KNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------G 142
KNQ +LEK+ + LD E R++++ RR+KN+K LQ + +D+ I+ EN
Sbjct: 117 KNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVN 176
Query: 143 ALRTTIANLEHRIQKIQEQ 154
L T+I E +I ++ Q
Sbjct: 177 DLNTSIGKRETQIMDLEAQ 191
BLAST of Tan0003978 vs. NCBI nr
Match:
KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])
HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 0
Query: 17 DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRD 76
D E+ SG KE F N I+ I L+E+N+L + NEKL +E +QW A + +
Sbjct: 400 DISREVVESG-KETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNE 459
Query: 77 LVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNG 136
L +T+ LKNQ +LEK+ + LD E R++++ R +KN+K LQ + ++ E E
Sbjct: 460 LEKTKSFLKNQDKLEKDLETLDEEMRRMNKANRSLKNEKTTLQATVGLHLKMAERSEEYE 519
Query: 137 ALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY 169
L+ +L +++ +Q + +I +++ Y
Sbjct: 520 ILKNYADSLHYQLTALQNSSKRITQEYESLNTDY 552
BLAST of Tan0003978 vs. NCBI nr
Match:
KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])
HSP 1 Score: 63.2 bits (152), Expect = 2.7e-06
Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 0
Query: 1 MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN- 60
+W +QF+P H D G ++ GYE + + KE F N
Sbjct: 312 VWLKQFIPPTHNLKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQ 371
Query: 61 -IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQEL 120
I+ I L+++N+L + NEKL +E +QW A + +L +T+ LKNQ +LE + + L
Sbjct: 372 WIEKSIELEQKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLETDLETL 431
Query: 121 DSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQAS 169
D E R++++ R MKN+K LQ + ++ E E L+ L +++ +Q +
Sbjct: 432 DKEMRRMNKANRSMKNEKTTLQATVGLHLKMAERSEEYKILKNYADFLHYQLTALQNSSK 491
BLAST of Tan0003978 vs. ExPASy TrEMBL
Match:
A0A5A7T6E2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=4 SV=1)
HSP 1 Score: 74.3 bits (181), Expect = 5.6e-10
Identity = 53/172 (30.81%), Postives = 89/172 (51.74%), Query Frame = 0
Query: 1 MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQL 60
+W +QF+P H+ + DF Y+ E K+ + N+ I+ I L+E+N+L
Sbjct: 312 VWLKQFIPPTHNLQESDFSYDPEDCQGKKTSSIERGKETSFEQPNQWIEKSIELEEKNRL 371
Query: 61 FHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRM 120
+ NEKL +E +QW A + L +T+ LKNQ +LEK+ + LD E R++++ R +
Sbjct: 372 LEQENEKLRKETSQWMDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSL 431
Query: 121 KNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ 154
KN+K Q + +D+ I+ EN L T+I E +I ++ Q
Sbjct: 432 KNEKTTFQATMGSQDEYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQ 483
BLAST of Tan0003978 vs. ExPASy TrEMBL
Match:
A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 55/213 (25.82%), Postives = 94/213 (44.13%), Query Frame = 0
Query: 1 MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL--------------------------- 60
+W +QF+P H+ +FDF Y+ E K+++ +
Sbjct: 248 VWLKQFIPPTHNLQEFDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQA 307
Query: 61 -------------------------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQA 120
N+ I+ I L+E+N+L + NEKL +E +QW A
Sbjct: 308 NRRKNIIDISREVVERGKKTSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHA 367
Query: 121 VETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIE 154
+ +L +T+ LKNQ +LEK+ + LD E R++++ R +KN+K LQ + +D+ I+
Sbjct: 368 TYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQDEYIK 427
BLAST of Tan0003978 vs. ExPASy TrEMBL
Match:
A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = 0
Query: 23 ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLL 82
E+S ++ +++ K+I+ L+E+N+L + NEKL +E +QW A + +L +T+ L
Sbjct: 57 ETSFEQPNQWIEKSIE----LEEKNRLLEQENEKLRKETSQWIDHATYLQNELEKTKSFL 116
Query: 83 KNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------G 142
KNQ +LEK+ + LD E R++++ RR+KN+K LQ + +D+ I+ EN
Sbjct: 117 KNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVN 176
Query: 143 ALRTTIANLEHRIQKIQEQ 154
L T+I E +I ++ Q
Sbjct: 177 DLNTSIGKRETQIMDLEAQ 191
BLAST of Tan0003978 vs. ExPASy TrEMBL
Match:
A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)
HSP 1 Score: 64.3 bits (155), Expect = 5.8e-07
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 0
Query: 17 DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRD 76
D E+ SG KE F N I+ I L+E+N+L + NEKL +E +QW A + +
Sbjct: 400 DISREVVESG-KETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNE 459
Query: 77 LVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNG 136
L +T+ LKNQ +LEK+ + LD E R++++ R +KN+K LQ + ++ E E
Sbjct: 460 LEKTKSFLKNQDKLEKDLETLDEEMRRMNKANRSLKNEKTTLQATVGLHLKMAERSEEYE 519
Query: 137 ALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY 169
L+ +L +++ +Q + +I +++ Y
Sbjct: 520 ILKNYADSLHYQLTALQNSSKRITQEYESLNTDY 552
BLAST of Tan0003978 vs. ExPASy TrEMBL
Match:
A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)
HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 0
Query: 1 MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN- 60
+W +QF+P H D G ++ GYE + + KE F N
Sbjct: 312 VWLKQFIPPTHNLKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQ 371
Query: 61 -IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQEL 120
I+ I L+++N+L + NEKL +E +QW A + +L +T+ LKNQ +LE + + L
Sbjct: 372 WIEKSIELEQKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLETDLETL 431
Query: 121 DSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQAS 169
D E R++++ R MKN+K LQ + ++ E E L+ L +++ +Q +
Sbjct: 432 DKEMRRMNKANRSMKNEKTTLQATVGLHLKMAERSEEYKILKNYADFLHYQLTALQNSSK 491
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7T6E2 | 5.6e-10 | 30.81 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=... | [more] |
A0A5A7VFL0 | 2.0e-07 | 25.82 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=... | [more] |
A0A5D3DJ95 | 2.6e-07 | 33.09 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... | [more] |
A0A5A7T5S7 | 5.8e-07 | 31.17 | Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=... | [more] |
A0A5A7T1W2 | 1.3e-06 | 27.46 | Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... | [more] |
Match Name | E-value | Identity | Description | |