Tan0003978 (gene) Snake gourd v1

Overview
NameTan0003978
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionGirdin-like
LocationLG08: 12633416 .. 12634167 (+)
RNA-Seq ExpressionTan0003978
SyntenyTan0003978
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGTACTGCGGTTAATAAAATCCTAGAAAGAGGTAAAAAAAATCAACATTGAGAGGCATAGTGAAACTGCCACAACAGAATACAAGTTGTGGTATGAGACTTATCGAATGATCCATACAACTCAAAAAAGGAAAAAAGGTTTCTAAACAAGAATATAGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAGATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAGAATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACGTAAGAATTATTGACCTAGAAAACAAAATCGTTTTCTTCCAAAAGTTTGTTTCTGAATTAAACACTTCAATCGATGCGTGAACTAAGCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGATTCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA

mRNA sequence

ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGAAAAAAGGTTTCTAAACAAGAATATAGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAGATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAGAATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGATTCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA

Coding sequence (CDS)

ATGTGGTTTGAACAGTTTGTTCCAGTAATACATGACTCAGGAGATTTCGACTTCGGATATGAACTAGAGAGTTCTGGACAAAAGGAAAAAAGGTTTCTAAACAAGAATATAGACGGACATATCCTTTTGAAAGAGGAAAATCAATTGTTCCATCGACATAATGAGAAGTTACTGCAAGAGATAACTCAATGGAAGCAGCAAGCTGTAGAGACAAAAAGAGATCTGGTCGAAACAAGGAGACTATTGAAGAACCAAGTTAGGCTTGAGAAAGAAGGTCAAGAATTGGACTCTGAAAACAGGCAACTAGACGAAAAAGTTAGAAGGATGAAGAATGATAAAGATGCATTACAAAGGATTTTGAAAGAGAAGGACCAAGTCATTGAGTCTGAAGAAAACAATGGTGCTTTACGCACGACAATCGCAAATCTAGAGCATCGGATTCAGAAAATTCAAGAACAAGCATCGAAGATACTCACCGATCATGATCAGTGGAAGTGGAAATATGGAGCGCTATTGAGTAATCAAGCCAATATATAA

Protein sequence

MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQASKILTDHDQWKWKYGALLSNQANI
Homology
BLAST of Tan0003978 vs. NCBI nr
Match: KAA0036949.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 1.2e-09
Identity = 53/172 (30.81%), Postives = 89/172 (51.74%), Query Frame = 0

Query: 1   MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQL 60
           +W +QF+P  H+  + DF Y+ E    K+   +           N+ I+  I L+E+N+L
Sbjct: 312 VWLKQFIPPTHNLQESDFSYDPEDCQGKKTSSIERGKETSFEQPNQWIEKSIELEEKNRL 371

Query: 61  FHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRM 120
             + NEKL +E +QW   A   +  L +T+  LKNQ +LEK+ + LD E R++++  R +
Sbjct: 372 LEQENEKLRKETSQWMDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSL 431

Query: 121 KNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ 154
           KN+K   Q  +  +D+ I+  EN           L T+I   E +I  ++ Q
Sbjct: 432 KNEKTTFQATMGSQDEYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQ 483

BLAST of Tan0003978 vs. NCBI nr
Match: KAA0066094.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 4.1e-07
Identity = 55/213 (25.82%), Postives = 94/213 (44.13%), Query Frame = 0

Query: 1   MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL--------------------------- 60
           +W +QF+P  H+  +FDF Y+ E    K+++ +                           
Sbjct: 248 VWLKQFIPPTHNLQEFDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQA 307

Query: 61  -------------------------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQA 120
                                    N+ I+  I L+E+N+L  + NEKL +E +QW   A
Sbjct: 308 NRRKNIIDISREVVERGKKTSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHA 367

Query: 121 VETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIE 154
              + +L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K  LQ  +  +D+ I+
Sbjct: 368 TYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQDEYIK 427

BLAST of Tan0003978 vs. NCBI nr
Match: TYK23632.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 5.4e-07
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = 0

Query: 23  ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLL 82
           E+S ++  +++ K+I+    L+E+N+L  + NEKL +E +QW   A   + +L +T+  L
Sbjct: 57  ETSFEQPNQWIEKSIE----LEEKNRLLEQENEKLRKETSQWIDHATYLQNELEKTKSFL 116

Query: 83  KNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------G 142
           KNQ +LEK+ + LD E R++++  RR+KN+K  LQ  +  +D+ I+  EN          
Sbjct: 117 KNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVN 176

Query: 143 ALRTTIANLEHRIQKIQEQ 154
            L T+I   E +I  ++ Q
Sbjct: 177 DLNTSIGKRETQIMDLEAQ 191

BLAST of Tan0003978 vs. NCBI nr
Match: KAA0036941.1 (girdin-like [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.2e-06
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 0

Query: 17  DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRD 76
           D   E+  SG KE  F   N  I+  I L+E+N+L  + NEKL +E +QW   A   + +
Sbjct: 400 DISREVVESG-KETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNE 459

Query: 77  LVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNG 136
           L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K  LQ  +    ++ E  E   
Sbjct: 460 LEKTKSFLKNQDKLEKDLETLDEEMRRMNKANRSLKNEKTTLQATVGLHLKMAERSEEYE 519

Query: 137 ALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY 169
            L+    +L +++  +Q  + +I  +++     Y
Sbjct: 520 ILKNYADSLHYQLTALQNSSKRITQEYESLNTDY 552

BLAST of Tan0003978 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.7e-06
Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 0

Query: 1   MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN- 60
           +W +QF+P  H     D G ++    GYE   + +               KE  F   N 
Sbjct: 312 VWLKQFIPPTHNLKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQ 371

Query: 61  -IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQEL 120
            I+  I L+++N+L  + NEKL +E +QW   A   + +L +T+  LKNQ +LE + + L
Sbjct: 372 WIEKSIELEQKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLETDLETL 431

Query: 121 DSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQAS 169
           D E R++++  R MKN+K  LQ  +    ++ E  E    L+     L +++  +Q  + 
Sbjct: 432 DKEMRRMNKANRSMKNEKTTLQATVGLHLKMAERSEEYKILKNYADFLHYQLTALQNSSK 491

BLAST of Tan0003978 vs. ExPASy TrEMBL
Match: A0A5A7T6E2 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 5.6e-10
Identity = 53/172 (30.81%), Postives = 89/172 (51.74%), Query Frame = 0

Query: 1   MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL-----------NKNIDGHILLKEENQL 60
           +W +QF+P  H+  + DF Y+ E    K+   +           N+ I+  I L+E+N+L
Sbjct: 312 VWLKQFIPPTHNLQESDFSYDPEDCQGKKTSSIERGKETSFEQPNQWIEKSIELEEKNRL 371

Query: 61  FHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRM 120
             + NEKL +E +QW   A   +  L +T+  LKNQ +LEK+ + LD E R++++  R +
Sbjct: 372 LEQENEKLRKETSQWMDHATYLQNKLEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSL 431

Query: 121 KNDKDALQRILKEKDQVIESEENN--------GALRTTIANLEHRIQKIQEQ 154
           KN+K   Q  +  +D+ I+  EN           L T+I   E +I  ++ Q
Sbjct: 432 KNEKTTFQATMGSQDEYIKDLENGKEYFLKLVNDLNTSIRKRETKIMDLEAQ 483

BLAST of Tan0003978 vs. ExPASy TrEMBL
Match: A0A5A7VFL0 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-07
Identity = 55/213 (25.82%), Postives = 94/213 (44.13%), Query Frame = 0

Query: 1   MWFEQFVPVIHDSGDFDFGYELESSGQKEKRFL--------------------------- 60
           +W +QF+P  H+  +FDF Y+ E    K+++ +                           
Sbjct: 248 VWLKQFIPPTHNLQEFDFSYDPEDCQGKKRQAVCAWKSIRKIKDKGHYEGVTSGYEAWQA 307

Query: 61  -------------------------NKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQA 120
                                    N+ I+  I L+E+N+L  + NEKL +E +QW   A
Sbjct: 308 NRRKNIIDISREVVERGKKTSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHA 367

Query: 121 VETKRDLVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIE 154
              + +L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K  LQ  +  +D+ I+
Sbjct: 368 TYLQNELEKTKSFLKNQDKLEKDLETLDKEMRRMNKANRSLKNEKTTLQATMGSQDEYIK 427

BLAST of Tan0003978 vs. ExPASy TrEMBL
Match: A0A5D3DJ95 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.6e-07
Identity = 46/139 (33.09%), Postives = 81/139 (58.27%), Query Frame = 0

Query: 23  ESSGQKEKRFLNKNIDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLL 82
           E+S ++  +++ K+I+    L+E+N+L  + NEKL +E +QW   A   + +L +T+  L
Sbjct: 57  ETSFEQPNQWIEKSIE----LEEKNRLLEQENEKLRKETSQWIDHATYLQNELEKTKSFL 116

Query: 83  KNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENN--------G 142
           KNQ +LEK+ + LD E R++++  RR+KN+K  LQ  +  +D+ I+  EN          
Sbjct: 117 KNQDKLEKDIETLDKEMRRMNKANRRLKNEKTTLQATVGSQDEYIKDLENGKEYFLELVN 176

Query: 143 ALRTTIANLEHRIQKIQEQ 154
            L T+I   E +I  ++ Q
Sbjct: 177 DLNTSIGKRETQIMDLEAQ 191

BLAST of Tan0003978 vs. ExPASy TrEMBL
Match: A0A5A7T5S7 (Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.8e-07
Identity = 48/154 (31.17%), Postives = 83/154 (53.90%), Query Frame = 0

Query: 17  DFGYELESSGQKEKRFLNKN--IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRD 76
           D   E+  SG KE  F   N  I+  I L+E+N+L  + NEKL +E +QW   A   + +
Sbjct: 400 DISREVVESG-KETSFEQPNQWIEKSIELEEKNRLLEQENEKLRKETSQWMDHATYLQNE 459

Query: 77  LVETRRLLKNQVRLEKEGQELDSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNG 136
           L +T+  LKNQ +LEK+ + LD E R++++  R +KN+K  LQ  +    ++ E  E   
Sbjct: 460 LEKTKSFLKNQDKLEKDLETLDEEMRRMNKANRSLKNEKTTLQATVGLHLKMAERSEEYE 519

Query: 137 ALRTTIANLEHRIQKIQEQASKILTDHDQWKWKY 169
            L+    +L +++  +Q  + +I  +++     Y
Sbjct: 520 ILKNYADSLHYQLTALQNSSKRITQEYESLNTDY 552

BLAST of Tan0003978 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.3e-06
Identity = 53/193 (27.46%), Postives = 93/193 (48.19%), Query Frame = 0

Query: 1   MWFEQFVPVIH-----DSGDFD---FGYELESSGQ---------------KEKRFLNKN- 60
           +W +QF+P  H     D G ++    GYE   + +               KE  F   N 
Sbjct: 312 VWLKQFIPPTHNLKIKDKGHYEGVTSGYEAWQANRRKNIIDISREVVERGKETSFEQPNQ 371

Query: 61  -IDGHILLKEENQLFHRHNEKLLQEITQWKQQAVETKRDLVETRRLLKNQVRLEKEGQEL 120
            I+  I L+++N+L  + NEKL +E +QW   A   + +L +T+  LKNQ +LE + + L
Sbjct: 372 WIEKSIELEQKNRLLEQENEKLRKETSQWMDHATYLQNELEKTKSFLKNQDKLETDLETL 431

Query: 121 DSENRQLDEKVRRMKNDKDALQRILKEKDQVIESEENNGALRTTIANLEHRIQKIQEQAS 169
           D E R++++  R MKN+K  LQ  +    ++ E  E    L+     L +++  +Q  + 
Sbjct: 432 DKEMRRMNKANRSMKNEKTTLQATVGLHLKMAERSEEYKILKNYADFLHYQLTALQNSSK 491

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
KAA0036949.11.2e-0930.81girdin-like [Cucumis melo var. makuwa][more]
KAA0066094.14.1e-0725.82girdin-like [Cucumis melo var. makuwa][more]
TYK23632.15.4e-0733.09girdin-like [Cucumis melo var. makuwa][more]
KAA0036941.11.2e-0631.17girdin-like [Cucumis melo var. makuwa][more]
KAA0036933.12.7e-0627.46uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
A0A5A7T6E25.6e-1030.81Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00290 PE=... [more]
A0A5A7VFL02.0e-0725.82Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00850 PE=... [more]
A0A5D3DJ952.6e-0733.09Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4336G00010 P... [more]
A0A5A7T5S75.8e-0731.17Girdin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00170 PE=... [more]
A0A5A7T1W21.3e-0627.46Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 54..74
NoneNo IPR availableCOILSCoilCoilcoord: 85..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003978.1Tan0003978.1mRNA