Tan0003964 (gene) Snake gourd v1

Overview


Name	Tan0003964
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein RADIALIS-like 1
Location	LG02: 7984098 .. 7984292 (+)
RNA-Seq Expression	Tan0003964
Synteny	Tan0003964

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCAATGTCATCTCGTGGATCAGATGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAGGCTTTAGCAGTGTATGATCAAGACACACCTGAGAGATGGTTGAATGTTTCAAAGATTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAAGCACTATCAACTTCTTGTGGAGGATGTCAAATATATATAG

mRNA sequence

ATGGCTTCAATGTCATCTCGTGGATCAGATGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAGGCTTTAGCAGTGTATGATCAAGACACACCTGAGAGATGGTTGAATGTTTCAAAGATTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAAGCACTATCAACTTCTTGTGGAGGATGTCAAATATATATAG

Coding sequence (CDS)

ATGGCTTCAATGTCATCTCGTGGATCAGATGCATGGACTGCAATGCAAAACAAGGCGTTTGAGAAGGCTTTAGCAGTGTATGATCAAGACACACCTGAGAGATGGTTGAATGTTTCAAAGATTGTTGGTGAGAAAACTGAAGAGGAAGTCAAGAAGCACTATCAACTTCTTGTGGAGGATGTCAAATATATATAG

Protein sequence

MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKYI

Homology

[Close]

BLAST of Tan0003964 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.3e-18
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 2  ASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV 61
          +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NV+K+VG KT EEVK+HY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KYI 65
            I
Sbjct: 64 NSI 66

[Close]

BLAST of Tan0003964 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 4.1e-16
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  SMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVK 62
          SMSS GS +WT  QNKAFE+ALAVYDQDTP+RW NV++ VG KT EE K+ Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 YI 65
           I
Sbjct: 65 SI 66

[Close]

BLAST of Tan0003964 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-16
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MAS S   S +WT+ QNK FE+ALAVYD+DTP+RW NV+K VG K+ EEVK+HY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKYI 65
          +  I
Sbjct: 61 LMNI 64

[Close]

BLAST of Tan0003964 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 5.3e-16
Identity = 40/61 (65.57%), Postives = 52/61 (85.25%), Query Frame = 0


Query: 5  SSRGSD-AWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVKY 64
          S+RGS   W+A +NKAFE+ALAVYD+DTP+RW NV++ V  +T EEVKKHY++LVED+KY
Sbjct: 3  STRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKY 62

[Close]

BLAST of Tan0003964 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.7e-14
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTP+RW NV+K VG KT EEVK+HY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of Tan0003964 vs. NCBI nr
Match: XP_022136148.1 (protein RADIALIS-like 1 [Momordica charantia])

HSP 1 Score: 117.9 bits (294), Expect = 3.3e-23
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS AWTAMQNKAFE+ALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLLVED
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. NCBI nr
Match: XP_022972527.1 (protein RADIALIS-like 1 [Cucurbita maxima])

HSP 1 Score: 116.3 bits (290), Expect = 9.6e-23
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K+VGEKTEEEVK+HYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. NCBI nr
Match: XP_022952273.1 (protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-like 1 [Cucurbita pepo subsp. pepo] >KAG7011709.1 Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-22
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. NCBI nr
Match: KAG6572041.1 (Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 114.8 bits (286), Expect = 2.8e-22
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. NCBI nr
Match: XP_038888638.1 (protein RADIALIS-like 1 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 4.8e-22
Identity = 55/64 (85.94%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSS GS+AWTAMQNK FEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL++D
Sbjct: 1  MASMSSHGSNAWTAMQNKTFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLDD 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. ExPASy TrEMBL
Match: A0A6J1C6U4 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS AWTAMQNKAFE+ALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLLVED
Sbjct: 1  MASMSSRGSSAWTAMQNKAFEEALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLVED 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. ExPASy TrEMBL
Match: A0A6J1I517 (protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.7e-23
Identity = 56/64 (87.50%), Postives = 62/64 (96.88%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K+VGEKTEEEVK+HYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKVVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. ExPASy TrEMBL
Match: A0A6J1GK35 (protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 56/64 (87.50%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSSRGS+AWT MQNKAFEKALAVYDQDTPERWLNV+K VGEKTEEEVK+HYQLL+ D
Sbjct: 1  MASMSSRGSNAWTPMQNKAFEKALAVYDQDTPERWLNVAKAVGEKTEEEVKRHYQLLLHD 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. ExPASy TrEMBL
Match: A0A6J1C4I7 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007851 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.0e-21
Identity = 52/64 (81.25%), Postives = 61/64 (95.31%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMS+ GS +WTAMQNKAFE+ALAVYD+DTP+RWLNV+K +GEKTEEEVK+HYQLLVED
Sbjct: 1  MASMSAHGSGSWTAMQNKAFERALAVYDEDTPQRWLNVAKAIGEKTEEEVKRHYQLLVED 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKHI 64

[Close]

BLAST of Tan0003964 vs. ExPASy TrEMBL
Match: A0A6J1C385 (protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.7e-21
Identity = 54/64 (84.38%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MASMSS GS AWTA QNKAFEKALAVYDQDTPERWLNV+K VG KT EEVK+HY+LLVED
Sbjct: 1  MASMSSHGSSAWTAKQNKAFEKALAVYDQDTPERWLNVAKAVGGKTAEEVKRHYELLVED 60

Query: 61 VKYI 65
          VK+I
Sbjct: 61 VKFI 64

[Close]

BLAST of Tan0003964 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-19
Identity = 43/63 (68.25%), Postives = 53/63 (84.13%), Query Frame = 0


Query: 2  ASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDV 61
          +SMSS+ S +WTA QNKAFE+ALA YDQDTP RW NV+K+VG KT EEVK+HY+LLV+D+
Sbjct: 4  SSMSSQSSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELLVQDI 63

Query: 62 KYI 65
            I
Sbjct: 64 NSI 66

[Close]

BLAST of Tan0003964 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 84.7 bits (208), Expect = 2.9e-17
Identity = 41/62 (66.13%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 3  SMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVEDVK 62
          SMSS GS +WT  QNKAFE+ALAVYDQDTP+RW NV++ VG KT EE K+ Y LLV D++
Sbjct: 5  SMSSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAVGGKTPEEAKRQYDLLVRDIE 64

Query: 63 YI 65
           I
Sbjct: 65 SI 66

[Close]

BLAST of Tan0003964 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 84.3 bits (207), Expect = 3.8e-17
Identity = 40/64 (62.50%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MAS S   S +WT+ QNK FE+ALAVYD+DTP+RW NV+K VG K+ EEVK+HY +LVED
Sbjct: 1  MASSSMSSSSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDILVED 60

Query: 61 VKYI 65
          +  I
Sbjct: 61 LMNI 64

[Close]

BLAST of Tan0003964 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-15
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTP+RW NV+K VG KT EEVK+HY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

[Close]

BLAST of Tan0003964 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-15
Identity = 39/61 (63.93%), Postives = 46/61 (75.41%), Query Frame = 0


Query: 1  MASMSSRGSDAWTAMQNKAFEKALAVYDQDTPERWLNVSKIVGEKTEEEVKKHYQLLVED 60
          MAS S      WT  QNK FE+ALAVYD+DTP+RW NV+K VG KT EEVK+HY +LVED
Sbjct: 1  MASNSRSSISPWTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDILVED 60

Query: 61 V 62
          +
Sbjct: 61 L 61

The following BLAST results are available for this feature:

BLAST of Tan0003964 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVB8	3.3e-18	68.25	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q9SIJ5	4.1e-16	66.13	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
Q8GW75	5.3e-16	62.50	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]
Q58FS3	5.3e-16	65.57	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	1.7e-14	63.93	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]

BLAST of Tan0003964 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136148.1	3.3e-23	90.63	protein RADIALIS-like 1 [Momordica charantia]	[more]
XP_022972527.1	9.6e-23	87.50	protein RADIALIS-like 1 [Cucurbita maxima]	[more]
XP_022952273.1	2.8e-22	87.50	protein RADIALIS-like 1 [Cucurbita moschata] >XP_023511439.1 protein RADIALIS-li...	[more]
KAG6572041.1	2.8e-22	87.50	Protein RADIALIS-like 1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038888638.1	4.8e-22	85.94	protein RADIALIS-like 1 [Benincasa hispida]	[more]

BLAST of Tan0003964 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C6U4	1.6e-23	90.63	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007913 PE=4 SV=1	[more]
A0A6J1I517	4.7e-23	87.50	protein RADIALIS-like 1 OS=Cucurbita maxima OX=3661 GN=LOC111471073 PE=4 SV=1	[more]
A0A6J1GK35	1.4e-22	87.50	protein RADIALIS-like 1 OS=Cucurbita moschata OX=3662 GN=LOC111455002 PE=4 SV=1	[more]
A0A6J1C4I7	2.0e-21	81.25	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007851 PE=4 SV=1	[more]
A0A6J1C385	5.7e-21	84.38	protein RADIALIS-like 1 OS=Momordica charantia OX=3673 GN=LOC111007847 PE=4 SV=1	[more]

BLAST of Tan0003964 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39250.1	2.4e-19	68.25	RAD-like 1	[more]
AT2G21650.1	2.9e-17	66.13	Homeodomain-like superfamily protein	[more]
AT1G19510.1	3.8e-17	62.50	RAD-like 5	[more]
AT1G75250.1	1.2e-15	63.93	RAD-like 6	[more]
AT1G75250.2	1.2e-15	63.93	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 8..60 e-value: 9.2E-6 score: 35.2
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 11..58 e-value: 8.23618E-5 score: 34.0882
None	No IPR available	GENE3D	1.10.10.60		coord: 10..57 e-value: 1.6E-18 score: 68.4
None	No IPR available	PANTHER	PTHR43952:SF68	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..64
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 2..64
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003964.1	Tan0003964.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity