Tan0003940 (gene) Snake gourd v1

Overview


Name	Tan0003940
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	LG02: 84416418 .. 84417732 (+)
RNA-Seq Expression	Tan0003940
Synteny	Tan0003940

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCACTTTCAGCAGCCACTGCCAGAGCCTTCTATCTGCGGCTCTCATCTTCATCTTCATTTTACAGTCCCTCATTCAACCCTAAACACTCCCTCCAATCACCCTCCCGCCGCACAGTAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCGCCGCATCTCGACGGAAGCCTCGCCGGAGATTTTGGATTCGATCCACTTGGGCTCGCCGAAGACCCACATAGCTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTGTCGCTTCGCCATGCTTGGGGTCTCTGGAATTCTTCTCACAGATGTCTGTAACCAATCTCCAACCCCCATTACCAAATTCAATCTTACCTCTCAACGAATTGCGTTTTTTTTTTCCTTTTTAATCTTCTTTGTGTGTGGCAGTTGCTTCGTGTAACAGGAATCAGTAAATTACCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGGTCCTAATTCTTCATTATCCTCCCTTTCTTTTTGGGGTTTAATCTGTAAGTTCCTGTGTGTGGCTGTATTCATTTCTTCTGCTTTTATATGGCTTTTGTAGGTTTGTGGAAACCAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGGAACTTTCTTTGGATTAGAATCCGCTTTCGAAGGTCTCGAGCCCGGGTAATGTACATTTCTACTAATCTTAATGTCAATCTGAGTATAGTCCAATTAGTCAAGACATTATATCTTCCAGGGGTTTAAATCTCAACCAACTTGAGTAGGAGCTTATCCATAGGTTTCTTATATGCACTTTTTATCATTGGACCAGCTAATTAGAGGGAAATCTGAACTTTATATTATAAATTGAAAAGGGAATAGTTGTTGTTTCCTCTTGAACTTACCTCATGGATTAAACATCCTTGAGGGATGATCAACTTACAGATACCCTGGGGGTCCTCTGCTGAATCCTCTTGGCTTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGTTCATTTCTCCACTCATATTGTAAAATTTTCGTCTTCGTTTTCCCGGACTAATCTTCGTTCTTTCGAACTCTAGGGCGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCCTATGTGACACAAACAGGACCAATAGATAACCTTCTGGAGCACCTTTCAAATCCATGGCACAAGACTATTGTCCAGACCCTCTCGAACTCAAGTCCTTGA

mRNA sequence

ATGGCGGTTTCACTTTCAGCAGCCACTGCCAGAGCCTTCTATCTGCGGCTCTCATCTTCATCTTCATTTTACAGTCCCTCATTCAACCCTAAACACTCCCTCCAATCACCCTCCCGCCGCACAGTAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCGCCGCATCTCGACGGAAGCCTCGCCGGAGATTTTGGATTCGATCCACTTGGGCTCGCCGAAGACCCACATAGCTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTGTCGCTTCGCCATGCTTGGGGTCTCTGGAATTCTTCTCACAGATTTGCTTCGTGTAACAGGAATCAGTAAATTACCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACCAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGGAACTTTCTTTGGATTAGAATCCGCTTTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCTCTTGGCTTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGGCGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCCTATGTGACACAAACAGGACCAATAGATAACCTTCTGGAGCACCTTTCAAATCCATGGCACAAGACTATTGTCCAGACCCTCTCGAACTCAAGTCCTTGA

Coding sequence (CDS)

ATGGCGGTTTCACTTTCAGCAGCCACTGCCAGAGCCTTCTATCTGCGGCTCTCATCTTCATCTTCATTTTACAGTCCCTCATTCAACCCTAAACACTCCCTCCAATCACCCTCCCGCCGCACAGTAATAGCTCAAGCCCAATCTCAGCCTCGCCAAACATGGCTCCCCGGCCTCGACCCTCCGCCGCATCTCGACGGAAGCCTCGCCGGAGATTTTGGATTCGATCCACTTGGGCTCGCCGAAGACCCACATAGCTTGAAGTGGTACGTCCAAGCAGAGCTCGTTCATTGTCGCTTCGCCATGCTTGGGGTCTCTGGAATTCTTCTCACAGATTTGCTTCGTGTAACAGGAATCAGTAAATTACCTGTTTGGTACAATGCGGGTGCTGTGGAATATGGCTTTGCCAACAAAGAAACCCTCTTCATTGTTCAGCTGCTGTTGATGGGGTTTGTGGAAACCAAAAGATATATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGGAACTTTCTTTGGATTAGAATCCGCTTTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCTCTTGGCTTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGGCGGCTTGCAATGGTAGCCATGCTGGGGATCTTTGTGCAAGCCTATGTGACACAAACAGGACCAATAGATAACCTTCTGGAGCACCTTTCAAATCCATGGCACAAGACTATTGTCCAGACCCTCTCGAACTCAAGTCCTTGA

Protein sequence

MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPSRRTVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP

Homology

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BLAST of Tan0003940 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 355.9 bits (912), Expect = 3.8e-97
Identity = 167/210 (79.52%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 51  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLT 110
           R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDP SLKWYVQAELVH RFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 111 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ--G 170
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+   
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 171 TFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 230
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 231 VTQTGPIDNLLEHLSNPWHKTIVQTLSNSS 259
           VT TGPIDNL+EHLSNPWHKTI+QTL  S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

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BLAST of Tan0003940 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 2.3e-54
Identity = 110/202 (54.46%), Postives = 140/202 (69.31%), Query Frame = 0


Query: 54  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLL 113
           WLPGL  P +L GSLAGD GFDPLGLAEDP +LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 114 RVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGL 173
              GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 176

Query: 174 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 233
            S  +G E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  G
Sbjct: 177 YSLPKG-EVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKG 236

Query: 234 PIDNLLEHLSNPWHKTIVQTLS 256
           P +NLL+HLS+PWH TIVQT +
Sbjct: 237 PFENLLQHLSDPWHNTIVQTFN 251

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BLAST of Tan0003940 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 5.2e-54
Identity = 110/204 (53.92%), Postives = 139/204 (68.14%), Query Frame = 0


Query: 54  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLL 113
           WLPGL  P +L GSL GD GFDPLGLAEDP +L+W+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 114 RVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGL 173
              GI  +P WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQ 175

Query: 174 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 233
            S   G E GYPGG + NPL  A  +    + K KEI NGRLAM+A LG  +Q  VT  G
Sbjct: 176 YSLPAG-EVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGKG 235

Query: 234 PIDNLLEHLSNPWHKTIVQTLSNS 258
           P DNLL+H+S+PWH TIVQTL  +
Sbjct: 236 PFDNLLQHISDPWHNTIVQTLGGN 252

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BLAST of Tan0003940 vs. ExPASy Swiss-Prot
Match: P10708 (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAB7 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 3.8e-52
Identity = 107/216 (49.54%), Postives = 131/216 (60.65%), Query Frame = 0


Query: 41  TVIAQAQSQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFA 100
           T +  A    R  W PG  PPP LDGSL GDFGFDPLGLA DP SL+W  QAELVHCR+A
Sbjct: 55  TTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWA 114

Query: 101 MLGVSGILLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFK 160
           MLG +GI + +LL   GI   P WY AG  EY F +  TLFIV+L+L+G+ E +R+ D  
Sbjct: 115 MLGAAGIFIPELLTKIGILNTPSWYTAGEQEY-FTDTTTLFIVELVLIGWAEGRRWADII 174

Query: 161 SPGSQAQGTFFGLESAFEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVA 220
            PG       F   +   G + GYPGG   +PLG          + + KEIKNGRLAM+A
Sbjct: 175 KPGCVNTDPIFP-NNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 234

Query: 221 MLGIFVQAYVTQTGPIDNLLEHLSNPWHKTIVQTLS 256
           ++G + Q   T TGPIDNL  HL++P H TI    S
Sbjct: 235 VMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

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BLAST of Tan0003940 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 5.4e-51
Identity = 119/255 (46.67%), Postives = 149/255 (58.43%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPS----RRTVIAQAQSQPRQTWLP 60
           MA SL A++A A    +SS S         K  L  P+      +V A A    R  W P
Sbjct: 1   MASSLCASSAIA---AISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFP 60

Query: 61  GLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVT 120
           G  PP  LDGSL GDFGFDPLGL+ DP SLKW VQAE+VHCR+AMLG +GI + + L   
Sbjct: 61  GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKI 120

Query: 121 GISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESA 180
           GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS      F   + 
Sbjct: 121 GILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP-NNK 180

Query: 181 FEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPI 240
             G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPI
Sbjct: 181 LTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 240

Query: 241 DNLLEHLSNPWHKTI 251
           DNL  HL++P H TI
Sbjct: 241 DNLFAHLADPGHATI 250

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BLAST of Tan0003940 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 459.9 bits (1182), Expect = 1.4e-125
Identity = 233/262 (88.93%), Postives = 248/262 (94.66%), Query Frame = 0


Query: 1   MAVSLSAATAR--AFYLRLSSSSSFYSPSFNPKHS--LQSPSRRT-VIAQAQSQPRQTWL 60
           MAVS+SAATAR  AF+L+ SSSSS Y+PSFNP  S  L+SPSRRT +IAQAQS+ RQTWL
Sbjct: 1   MAVSVSAATARATAFHLQPSSSSSSYTPSFNPNQSLRLRSPSRRTLLIAQAQSEHRQTWL 60

Query: 61  PGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRV 120
           PGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKWYVQAELVH RFAMLGVSGILLTDLLRV
Sbjct: 61  PGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGILLTDLLRV 120

Query: 121 TGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLE 180
           TGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE
Sbjct: 121 TGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180

Query: 181 SAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGP 240
           +AFEGLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVT TGP
Sbjct: 181 AAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTHTGP 240

Query: 241 IDNLLEHLSNPWHKTIVQTLSN 257
           IDNL+EHLSNPWHKTI+QTLS+
Sbjct: 241 IDNLVEHLSNPWHKTIIQTLSS 262

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BLAST of Tan0003940 vs. NCBI nr
Match: XP_022951251.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moschata] >KAG6585667.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020573.1 Photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 452.6 bits (1163), Expect = 2.3e-123
Identity = 230/260 (88.46%), Postives = 240/260 (92.31%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPG 60
           MAVSLSAAT+      L  SSSFYS S +PK H L+SPSRRTV AQA  QSQPRQTWLPG
Sbjct: 1   MAVSLSAATS----FHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPG 60

Query: 61  LDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH RFAMLGVSGILLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESA 180
           IS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESA
Sbjct: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240

Query: 241 NLLEHLSNPWHKTIVQTLSN 257
           NL+EHLSNPWH T++ TLS+
Sbjct: 241 NLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Tan0003940 vs. NCBI nr
Match: XP_023536986.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 452.6 bits (1163), Expect = 2.3e-123
Identity = 231/262 (88.17%), Postives = 241/262 (91.98%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA----QSQPRQTWL 60
           MAVSLSAAT+      L  SSSFYS S +PK H L+SPSRRTVIAQA    QSQPRQTWL
Sbjct: 1   MAVSLSAATS----FHLLPSSSFYSSSLSPKQHLLRSPSRRTVIAQAQSQSQSQPRQTWL 60

Query: 61  PGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRV 120
           PGLDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH RFAMLGVSGILLTDLLRV
Sbjct: 61  PGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRV 120

Query: 121 TGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLE 180
           TGIS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE
Sbjct: 121 TGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLE 180

Query: 181 SAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGP 240
           SAFEGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGP
Sbjct: 181 SAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGP 240

Query: 241 IDNLLEHLSNPWHKTIVQTLSN 257
           IDNL+EHLSNPWH TI+ TLS+
Sbjct: 241 IDNLVEHLSNPWHNTIIHTLSS 258

[Close]

BLAST of Tan0003940 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 451.1 bits (1159), Expect = 6.7e-123
Identity = 231/263 (87.83%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPG 60
           MAVSLSAAT       L  SSS YS S + K H L+SPSRRTV AQA  QSQPRQTWLPG
Sbjct: 1   MAVSLSAATP----FHLLPSSSLYSSSLSSKQHLLRSPSRRTVTAQAQSQSQPRQTWLPG 60

Query: 61  LDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH RFAMLGVSGILLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESA 180
           IS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESA
Sbjct: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240

Query: 241 NLLEHLSNPWHKTIVQTLSNSSP 260
           NL+EHLSNPWH TI+ TLS+SSP
Sbjct: 241 NLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of Tan0003940 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 449.1 bits (1154), Expect = 2.5e-122
Identity = 227/263 (86.31%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPKH--SLQSPSRRT-VIAQAQSQPRQTWLPG 60
           MAVS SAATA    L L  SSS Y+P FNP     L+SPSRRT +IA AQS+ RQTWLPG
Sbjct: 1   MAVSFSAATA----LHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPG 60

Query: 61  LDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDG+LAGDFGFDPLGL EDP SLKWYVQAELVHCRFAMLGVSG+LLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESA 180
           IS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+A
Sbjct: 121 ISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           F+GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPID
Sbjct: 181 FKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPID 240

Query: 241 NLLEHLSNPWHKTIVQTLSNSSP 260
           NL+EHLSNPWHKTI+QTLS+SSP
Sbjct: 241 NLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Tan0003940 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 452.6 bits (1163), Expect = 1.1e-123
Identity = 230/260 (88.46%), Postives = 240/260 (92.31%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPG 60
           MAVSLSAAT+      L  SSSFYS S +PK H L+SPSRRTV AQA  QSQPRQTWLPG
Sbjct: 1   MAVSLSAATS----FHLLPSSSFYSSSLSPKQHLLRSPSRRTVTAQAQSQSQPRQTWLPG 60

Query: 61  LDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH RFAMLGVSGILLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESA 180
           IS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESA
Sbjct: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240

Query: 241 NLLEHLSNPWHKTIVQTLSN 257
           NL+EHLSNPWH T++ TLS+
Sbjct: 241 NLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of Tan0003940 vs. ExPASy TrEMBL
Match: A0A6J1KNS0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495909 PE=3 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 3.2e-123
Identity = 231/263 (87.83%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPK-HSLQSPSRRTVIAQA--QSQPRQTWLPG 60
           MAVSLSAAT       L  SSS YS S + K H L+SPSRRTV AQA  QSQPRQTWLPG
Sbjct: 1   MAVSLSAATP----FHLLPSSSLYSSSLSSKQHLLRSPSRRTVTAQAQSQSQPRQTWLPG 60

Query: 61  LDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDG+LAGDFGFDPLGL EDPHSLKW+VQAELVH RFAMLGVSGILLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGILLTDLLRVTG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESA 180
           IS+LPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLESA
Sbjct: 121 ISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLESA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           FEGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID
Sbjct: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240

Query: 241 NLLEHLSNPWHKTIVQTLSNSSP 260
           NL+EHLSNPWH TI+ TLS+SSP
Sbjct: 241 NLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of Tan0003940 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 227/263 (86.31%), Postives = 240/263 (91.25%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPKH--SLQSPSRRT-VIAQAQSQPRQTWLPG 60
           MAVS SAATA    L L  SSS Y+P FNP     L+SPSRRT +IA AQS+ RQTWLPG
Sbjct: 1   MAVSFSAATA----LHLHPSSSSYTPLFNPSQFLRLRSPSRRTLLIAHAQSEHRQTWLPG 60

Query: 61  LDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVTG 120
           LDPPPHLDG+LAGDFGFDPLGL EDP SLKWYVQAELVHCRFAMLGVSG+LLTDLLRVTG
Sbjct: 61  LDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVLLTDLLRVTG 120

Query: 121 ISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLESA 180
           IS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+A
Sbjct: 121 ISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAA 180

Query: 181 FEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPID 240
           F+GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPID
Sbjct: 181 FKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPID 240

Query: 241 NLLEHLSNPWHKTIVQTLSNSSP 260
           NL+EHLSNPWHKTI+QTLS+SSP
Sbjct: 241 NLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of Tan0003940 vs. ExPASy TrEMBL
Match: A0A6J1CSJ3 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.2e-119
Identity = 224/273 (82.05%), Postives = 242/273 (88.64%), Query Frame = 0


Query: 1   MAV-SLSAATARAFYLRLSSSS--------SFYSPSFNPK---HS-LQSPSRRTVIAQAQ 60
           MAV SLSAAT  A  +R  SSS        +F+SPSF P+   HS   S SRRT++A+AQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  SQPRQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGI 120
           +QPR+TWLPGLDPPPHLDGSLAGDFGFDPLGLAEDP SLKWYVQAEL+H RFAMLG+SGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+SK+PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 -GTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQ 240
            GTFFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240

Query: 241 AYVTQTGPIDNLLEHLSNPWHKTIVQTLSNSSP 260
           AYVT  GPIDNL+EHLSNPWHKTI+QTLS+SSP
Sbjct: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of Tan0003940 vs. ExPASy TrEMBL
Match: A0A5A7UY53 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00360 PE=3 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 6.3e-119
Identity = 221/264 (83.71%), Postives = 241/264 (91.29%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHS---LQSPSRRT-VIAQAQSQPRQTWLP 60
           MAVS+SAAT   F+L  SSSS  ++P FNP +    L+SPSR + +IA AQS+ RQTWLP
Sbjct: 1   MAVSISAAT--PFHLHPSSSS--HTPLFNPTNQFVRLRSPSRPSLLIAHAQSEHRQTWLP 60

Query: 61  GLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVT 120
           GLDPPP+LDG+L GDFGFDPLGL EDP SLKWYVQAELVHCRFAMLGV+G+LLTDLLRVT
Sbjct: 61  GLDPPPYLDGTLVGDFGFDPLGLGEDPDSLKWYVQAELVHCRFAMLGVAGVLLTDLLRVT 120

Query: 121 GISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ-GTFFGLES 180
           GIS+LPVWYNAGAVEYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQ GTFFGLE+
Sbjct: 121 GISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEA 180

Query: 181 AFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPI 240
           AFEGLEPGYPGGPLLNPLG+AKD+KNAHDWKLKEIKNGRLAMVAMLGIFVQAYVT TGPI
Sbjct: 181 AFEGLEPGYPGGPLLNPLGIAKDVKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTHTGPI 240

Query: 241 DNLLEHLSNPWHKTIVQTLSNSSP 260
           DNL+EHLSNPWHKTI+QTLS+SSP
Sbjct: 241 DNLVEHLSNPWHKTIIQTLSSSSP 260

[Close]

BLAST of Tan0003940 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 355.9 bits (912), Expect = 2.7e-98
Identity = 167/210 (79.52%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 51  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLT 110
           R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDP SLKWYVQAELVH RFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 111 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ--G 170
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+   
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 171 TFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 230
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 231 VTQTGPIDNLLEHLSNPWHKTIVQTLSNSS 259
           VT TGPIDNL+EHLSNPWHKTI+QTL  S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Tan0003940 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 355.9 bits (912), Expect = 2.7e-98
Identity = 167/210 (79.52%), Postives = 185/210 (88.10%), Query Frame = 0


Query: 51  RQTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLT 110
           R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDP SLKWYVQAELVH RFAMLGV+GIL T
Sbjct: 46  RATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFT 105

Query: 111 DLLRVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ--G 170
           DLLR TGI  LPVWY AGAV++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+   
Sbjct: 106 DLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGS 165

Query: 171 TFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAY 230
            FFGLE+A EGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AMLG FVQA 
Sbjct: 166 FFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFVQAS 225

Query: 231 VTQTGPIDNLLEHLSNPWHKTIVQTLSNSS 259
           VT TGPIDNL+EHLSNPWHKTI+QTL  S+
Sbjct: 226 VTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of Tan0003940 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-55
Identity = 110/202 (54.46%), Postives = 140/202 (69.31%), Query Frame = 0


Query: 54  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLL 113
           WLPGL  P +L GSLAGD GFDPLGLAEDP +LKW+VQAELV+ R+AMLGV+G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 114 RVTGISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGL 173
              GI  +P WY+AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q   F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQ 176

Query: 174 ESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTG 233
            S  +G E GYPGG + NPL  A       + K KE+ NGRLAM+A LG  VQ  VT  G
Sbjct: 177 YSLPKG-EVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGKG 236

Query: 234 PIDNLLEHLSNPWHKTIVQTLS 256
           P +NLL+HLS+PWH TIVQT +
Sbjct: 237 PFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of Tan0003940 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 202.6 bits (514), Expect = 3.8e-52
Identity = 119/255 (46.67%), Postives = 149/255 (58.43%), Query Frame = 0


Query: 1   MAVSLSAATARAFYLRLSSSSSFYSPSFNPKHSLQSPS----RRTVIAQAQSQPRQTWLP 60
           MA SL A++A A    +SS S         K  L  P+      +V A A    R  W P
Sbjct: 1   MASSLCASSAIA---AISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAADPDRPIWFP 60

Query: 61  GLDPPPHLDGSLAGDFGFDPLGLAEDPHSLKWYVQAELVHCRFAMLGVSGILLTDLLRVT 120
           G  PP  LDGSL GDFGFDPLGL+ DP SLKW VQAE+VHCR+AMLG +GI + + L   
Sbjct: 61  GSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKI 120

Query: 121 GISKLPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQGTFFGLESA 180
           GI   P WY AG  EY F +K TLF+V+L+L+G+ E +R+ D   PGS      F   + 
Sbjct: 121 GILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFP-NNK 180

Query: 181 FEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMVAMLGIFVQAYVTQTGPI 240
             G + GYPGG   +PLG          + + KEIKNGRLAM+A++G + Q   T TGPI
Sbjct: 181 LTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPI 240

Query: 241 DNLLEHLSNPWHKTI 251
           DNL  HL++P H TI
Sbjct: 241 DNLFAHLADPGHATI 250

[Close]

BLAST of Tan0003940 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 171.8 bits (434), Expect = 7.3e-43
Identity = 104/270 (38.52%), Postives = 150/270 (55.56%), Query Frame = 0


Query: 2   AVSLSAATAR-AFYLRLSSSSSFYSPSFNPKHSLQSPSRRTVIAQAQSQPRQTWLPGLDP 61
           +++ S  TAR  F  +  +S+S    SF  K +   P +       Q   R  W      
Sbjct: 10  SLTSSVQTARQIFGSKPVASASQKKSSFVVKAAATPPVK-------QGANRPLWFASSQS 69

Query: 62  PPHLDGSLAGDFGFDPLGLAEDPHSL------KWYVQAELVHCRFAMLGVSGILLTDLLR 121
             +LDGSL GD+GFDPLGL+ DP         +W    E+++ RFAMLG +G +  ++L 
Sbjct: 70  LSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILG 129

Query: 122 VTGI----SKLPVWYNAGAVEYG-----FANKETLFIVQLLLMGFVETKRYMDFKSPGSQ 181
             G+    + LP W+  G +        +A+  TLF++++ LMGF E +R  D+ +PGS 
Sbjct: 130 KAGLIPAETALP-WFQTGVIPPAGTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSM 189

Query: 182 AQGTFFGLESAFEGL-EPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIF 241
            +  F GLE    G   P YPGGP  NPLG  KD K+  + KLKE+KNGRLAM+A+LG F
Sbjct: 190 GKQYFLGLEKGLAGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYF 249

Query: 242 VQAYVTQTGPIDNLLEHLSNPWHKTIVQTL 255
           +Q  VT  GP  NLL+HL++P +  ++ +L
Sbjct: 250 IQGLVTGVGPYQNLLDHLADPVNNNVLTSL 270

The following BLAST results are available for this feature:

BLAST of Tan0003940 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	3.8e-97	79.52	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P27521	2.3e-54	54.46	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9SQL2	5.2e-54	53.92	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P10708	3.8e-52	49.54	Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum OX=4081...	[more]
Q9SYW8	5.4e-51	46.67	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]

BLAST of Tan0003940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038886221.1	1.4e-125	88.93	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_022951251.1	2.3e-123	88.46	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita moscha...	[more]
XP_023536986.1	2.3e-123	88.17	photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like [Cucurbita p...	[more]
XP_023001834.1	6.7e-123	87.83	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]
XP_004150882.1	2.5e-122	86.31	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]

BLAST of Tan0003940 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GH16	1.1e-123	88.46	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1KNS0	3.2e-123	87.83	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A0A0LRB4	1.2e-122	86.31	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1CSJ3	2.2e-119	82.05	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A5A7UY53	6.3e-119	83.71	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]

BLAST of Tan0003940 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	2.7e-98	79.52	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.7e-98	79.52	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	1.7e-55	54.46	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	3.8e-52	46.67	photosystem I light harvesting complex gene 2	[more]
AT1G61520.1	7.3e-43	38.52	photosystem I light harvesting complex gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 61..247 e-value: 4.8E-62 score: 211.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 60..228 e-value: 1.4E-48 score: 165.4
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 20..256
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 48..256
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 20..256

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003940.1	Tan0003940.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009768	photosynthesis, light harvesting in photosystem I
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding