Tan0003920 (gene) Snake gourd v1

Overview


Name	Tan0003920
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	E3 ubiquitin-protein like
Location	LG09: 70663456 .. 70670365 (-)
RNA-Seq Expression	Tan0003920
Synteny	Tan0003920

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCGATGGCGCAGATTCTTTCCGGCAGCGGCGAGGAATCCCAATCCGAAGCCCTAAATTCGAATCTCCTTCCTAAAATGACTCAATCGACGGCCGTATCGGTGACGATTACAATAGAACAGCAAGTATCTCCAGAATCGACAGTAAACGAAACGAGGAGAGAATTAAATGAAGATTTGGAGAACAATAACGATGCGATTTGTTCGATTTGTAGGGAAGAAATTCAATTGGGGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGAAATTGGTGTGTGGGCATGGATTTCACAAGAACTGTATTAGGGCTTGGTTGCTTATAAAAAATACATGTCCCATTTGCCGATATCGATTGCCTCAGCTGCAAAACCCTTTGCTGAATAATAATAATTATGAGCGCCCCAACTTTCAATTGCGGCTTTTTCATCTGCTCTTCTGTCTCTTTCTTACCTTCTTTCTTCTTCTTTTTCTAATGTGGTTTGGTAATTTAATAGTTAATTGGGAATTACAGCAGTTAAAAAATTAGGCCTACCTTCTTTCATTTTTTGTATTTTATTCTTTAAAACTAATTCTATAAATATTCATTTCGTTTCTCTGTTTTGTTGTCTACTTTATCTATTTTTATTTTTTAAATTTAATTAAGAATTCAAATAATTTTATTTAGACTATAATTTATCGTTGAGGATGGATGAGAAAAAATAGGTACGACATTCAAAATTTATGTATTCATAAATAGTAACTATTGTGAACTTAGATTAGAATATTGATTACTCAAAACTAAATGATATTATATATCAAACAGTACCTAATATACTTAGATTGATAATTATTGATGATGGAATGACTCACGTGTTGATAAACTAAATCATTAGGGTTTTACTATAGTTTCATCTTTTTTAGAAAATATTTGTATTCTTATCCAAATTTAAAAAGATAATTTTTTTTTTTAATTTTAATTTTCTTTTTTTTTTTTTGCTTTTTTAGTTTTCAAAACATAGATTGGATTTTGAAAACATTTGTAAAAGCAAGATAACAAACCAAAGAAACGAAAAATATCTTCATTTATATGTATATGTAATTGAGATATTTGATTATTTGCCAACTCGAACATTAAGAAAGTTATCTTCAAACCAAAGTAATTGATTTAAGTTCTTACATACACATTTAGGCCCCGTTTGATAAACATTTGATTTTTTGTTTTTAATTTTTGAAATTTAAGCCTAAAAATACTATTTTTACCGATGAGTTTACGTGTTTTCTTATCTACTTTCTACCTATGTTTTCAAAAACTAAGTTAACTTTTGAAAACTAAAAAAAAATAGTTTTCAAAAACTTGATTTTGTTTTCAGAATTTGGCTAAGAATTCAAATGTTTTCTTGAGGGAGATGATCCCTATTATAAAAAAATTAGGTGAAAATAAGCTTAATTTTTAAAAACCAAAAACTGAAAACAAAATAGTTATCAAAAGGAACCTTAGTTTTTTATTTTTGAAAATTAATGTGCTTGTTTTCTCATCATTCTATATAATTATCTACAATAACTTTCATCTTTTTTAAGAAAATATTTGATTTAAACTTGGGTTGGTTTTTGATAACATACGTAAAAATTGGATGTCAAAACAAGAAAATCTATAGATGAAAGTAGCATTTACAAGCTTAATTTTCAAAAACTAAAAAGCAAATGGTTATCCAACAGAACCTTTATGGCCTGTTTGACATGCAATCCGGATTCTGTTATATGTTTTCAGATTCACTGAATTCAGTGAATATGTGTTTTAGCGAATGTGTTTTGAAATCGCTTTTGGATTCTAGGATCCAAATAGTAGAAATTCTGAAAACAACATTTTTATGTTTTCATTGTATCCAGATTCTGAATTTAAAATTTTAAAATGCATGATTATATTAAACAAAGATAAAAATCTTAATAAATACAATATTTCAAGTTATGAACTCAATTTACTTTTGTTAAATTAAAAAATATATAATATAATATAAACTATATAATATTATATTATAAAATGATAATTCTATAAAATTTACAAAATTATTTTATAAATTAATTAATAATGATTTATATTCAATCTAATAAATAGTTTTGCAACTACAACTAATTTCATGATGTATAAATATGTTATAGGACACACTTTAAACAACTGTTTAGAATGAAATCAAATTTTTAAATCTGCTACCAAACACATATTTGAAAACCTGAAATACAACTATGTTTTCATTGAATCCCTTGTTTTCAAATCTATGTTTCAAAATTACTTACCAAACAGACCCTTATTATTGAAAAAAGATATACTCTTTTAGACTATAAGATTTGAATTAAGATTCTATTTAGTCATCTTTTAGGTTTAAAAACATAATAGTTTAGTCCCTATCCTAATTTGAAAAATAGTTGTATATTAGATATGTTTACATGGTCGAGGCTGGGATACTGATGACTTCCCCGTTTTTGTCATCCCCACCCCCCATTTATTTTTTCGTTAAATTTTGTGGAGATCAGACCATAGATTCTCTATGGACAAGTGACATGAATCAATTCGTAAAAAATTATTCCTTCTTTAGTTTTTTTAAAGAAAATTAAATTAAATGGACTCATTTTAATTAAATAAATAGATAATGTCTCACTAATTATTATTATATATACACACATCATAAATAAAGAAGGAAAAAAAAAAACTCTTTCAATGGCTCGGCGAGGCAAAAAAAAAAAAAAAAAATAAATAAATAAAATAAAAAAATAATATATAATAGATTATATAGTAGTAATAATAATGGTAATAGAAATAGTAATAATAAAAAATAAAAAAGAATAATTTAATAATAATAGCAATATGAGTATATATTAGAAAAGAAAATTATAATAGTTTACTTAAATATAAAATTATTTTTATAAAAGAATAAAATCCATACCGATATAGTCAGGTTTGATTTTGCATTATAAATGATATTTTACAATGCCTACTTAGTAAAAGAGGATTAAAATAAACCTTCCAAATTCTTGTTTGTGGGCTAAAATTTTAATTTTAGTAGTCCTTCATTACTTAAATATAAAATTATTTAATACAAAAATTAATGAAGGTGCATATAGTAAAAAAAAAAAAATCTTCTCATTAATCACTTTTTTAAGATAGTAAAATTAGTTAATAACAATTATGATTATTTTTATTATAAAAACAACTAAATACATTTATAAGAAAGAACACTATGAATTTAACTTAAAACACATATTGCGCTTCATTTCAATTGACAGGATATTATCTTCAAACTTTCTTTTTTTTGTTACATTTATCTAAGTTTTTCTTAAATTACAAAGGATCAACATTGCAACAATAGAAAACAAGATAAAGGTTAGATTAAGTATCTGCAAGCTCAACTTCAATTGGTGGGACATTTTTTTTCATATCTTCAATTTTTTTTTTAAAATTACAAATGATCAATAATATTGCAATAAAAAAGCAAGATGAAGGTTAGATTAAGTAATTTAGCAAAAGTTATAAGACGAAGGAAAATAATGAATAAAAGAAGAAAAACAAACCTAAACATAGAGAAATCTAAAATGTTTGTATAAAAAAAGTTGAAGAGAGCTCCATGTAAAGTTGTAGGAGACAAAAGTTACAAAACCTTTGAAATTTTAATTTTACCATTAAATATAATTTAAGATAAAATCATAAATTTTAGAAATAAAGATATAACACTTTTCTTTTTTTGTTAAGTACAATAGAGATGGTGGATTGAACTATTCTCTCTTTGACAACACTTTTCATATTCTAACCTCTCCATCTCTTAAATATTTACATTGAGTATGTATTAAAAAAACACTTATATAATTATAGGTTATATATGAATGTATGTGAGTATGTGAAAAGAGGTTAAACCACTCATATCAATTTAATTTTATTGTATATTTTAAATTAAATAATAGTAAGTGTTAAAACAATTCTAAAAAAATATTCTTAGTAACAACGTGAGGGGGTGGCTGTGCATAATTTTTTTTTTGTTTGCTAATCTATTTTTTTAATTTTTCAATAATTTAGTAAGGAAAATTTAGGTATTAAGTTTAAAATTAAGAATAATATATAGTCCAAAAAACATCTCATATTCTAGCTTTTTAAATACTATTTTATGAGTTAAATTAAATACATTAATATTTTTATATAAATTATTAGTGATATATTTGTAGATGGAAGATTTAGCGCATGTTTGGGAATGATTTTAGAAATATTGATTTTAGTGTAATTGATTTGTCTATATAATTGATTTATTAAAAGTGATTTTCATATAATCATTTTCATGTTTGGTTGTATACTTTTAATAGTGATTTTGGTTTTGAAAAATTCACTTTTTTATGGAAATTTATGAATTTTGACAAAAGATTACAATTTTTACTCGTCATTAGAAGTATACTATTTTCAAAAATGAATAATAGTTATTTTAAATTACAATCACTTGACAAAAATCACTTGAGAATCACCTCCTAGTGATTGAAAGGGAACCATTTTAAATGATTTTGGATTATTCTAAAATTACTTGCTTAATATTGCAAAACATCATACTTTGGGTAGGAAAGTGATTTTGGTCACCCAAAATCACTCCCAAACATAACTGACAAAATAGTCTAAAAATGATTTTCTCTATAAACCACTTTTTAAAATAGAATTAAAGTATTCATTTTAAAACTTAAGGATCAAATAGACACCAACTTCAAATTTCGGAAACCAAAAGTATATTTTGCCTAAAATATATTATATGTTTACCATCTTTGCTCGGCCCAAAAATTCCACCCCCAGAAAATTGGCATCCCTATTCTATATATATATATATCACGTTATAACCCTAAGAATAAATTGCCCTTAGTGGCCTATGATTATAGGTAAATTGTGACTAAAGTAAAATGAGGTGGAAATATATATATATATATATATATATTTATCTTAATTTTATATTGAATTAAGACTTACGTGGCATATCTTTATTCTCTTCGTGGCTTCCTTCTTATTTTTCATTCTCCTCCTCAAGCAATTATCTATCGTCCTTCAAATTGCTCCACCCTCTTCAACCTCATCACTTAATTCTCCCATTAGCAACAACATCTTCAATTTTGGTAATATTATCTCTATGTACATTCAAAGATGTTGCAAAATTAAACTATCAGCCGTACACTTTCCAAATAAGTTTAAAAAATAGAGAGCATTTTTAATATGGTGAGGAAATTTAATGCAAAAAACTATTTACAAAAATAAAATTTTGATTTACATATATATACACATGCAAATAAAATATTTTTAGTTTAAATACTAGTTTGGTCCTTGTATGTTAACTTATATTCATTTTGATCTCCATATTTTCAAAATTTTATATTTAGACTCATTTTGGTCTATATGTGCTTTATTTTGATCTATAAATTAAAATTAAAACTTATTCTAACCAAATTTGTAATTTGTTTTAGTTTAACAATTGCAAGGGTAGGGTCATCGTCAAAATTCAATCTTTAAATAATAATAATAATAATTTTGTTCACTAAACTTGTCAGGTTATATATATCAATTTTAATCTCAAGTTTTTAATTTCATCATATTGCACATCAAACTCAGATTAACGTTAAATTTTAACCTCAAATTTTAGAAAGTATTAGAAGAAGTCTTATCTTATACGTTAATTATAGAATATATAAGTATAGAACATCAAGTTCATAAAATTTTGATAAAAACAATAGAGTTTTTTTTTTGGGTTAAAAATTTATGAATTTTGACAAATTATTTAATGATTAATTAATTTGTGAAGTCAAACTTATTATTCTTTTTTATGAAAAAAATTATTTTATTGAAGTGAGAGAGTTTGGGAGAATATAAACTTTACACTATTTTTTTCTTATTAAAATCAGTGGGGAATAAAGCCGCGAAAATTAAAATAGAGGTAAAAATAGTAACACTTACTTAAATGTTGAGTCTAAATTAACAAGTTTGAGATATTTGAATTAGCAATTATAATGAGAATGGAAAACCAATGTCGTAACTTAATATACTAATGGCATTAGGGAATAAAAAATTGGAGATAATACTTGCGATTCCGGTTCGCGATTTTAATTTCCATTTGAATTAGAAATTGTAATGATAATGAGAAACCATATAATTAATATGTGCTATAAATAAAAAATAATCACACAATGAGTATCCCATTTTGTTAGAGGTAAAATTCGAAAGGACAAATTTGAAATAACAGATAAAGCAATGCTCACCTCGTATGATAGAGTCAGGCCAGTTTTGTTTATCTTCTTCGGTTCGAATTTAAATGAGCCCTCTCTTCTTCCTACTTTGAGATGGATTAGGGTTTACACCCTAGAAAAAACCATATAAATAATTGTTCAGATTTTTCTCTCTTTTGTAGGTCACATTCTTCCCCTTTCAAATAAATTCACATTCTGTTCGGATTTTGGCAACAACACACTTCAATTAAAAAAAACTCTAAATTACAATTCCTGCTTATTCCGATTCAATGGATGTGTTTGAAATTGAAGGTGAGTTTGATTCAGATTCAGATTTAGGTTTGAATAATAGCACAAATTGAGAATTATTCAGAAATTAATTTGTATGACGATCATTTTGCAGAAAACGGGGAGATGAATCGACCAACTGCTGATGCAGCAACAATATCAACAGTTATGGAGAGCCTTCCATCGGTGATTTTGATAGAAACAGAAGAAGAAGATGATGATAATGATAATAATGGTGCGCCAATATTAATATTTTTTTGTTGTATTTGTATGGATGAGATTAAAATAGGGGAAGAAGCGAAGCAGTTACCGTGCCGCCATTTGTATCATAGTCTTTGCATTAGGCCCTGGTTGGAGATTAGAACTACTTGTCCACTTTGCCGTCATCAATTATTGCCTACACCAAACTGA

mRNA sequence

CGGCGATGGCGCAGATTCTTTCCGGCAGCGGCGAGGAATCCCAATCCGAAGCCCTAAATTCGAATCTCCTTCCTAAAATGACTCAATCGACGGCCGTATCGGTGACGATTACAATAGAACAGCAAGTATCTCCAGAATCGACAGTAAACGAAACGAGGAGAGAATTAAATGAAGATTTGGAGAACAATAACGATGCGATTTGTTCGATTTGTAGGGAAGAAATTCAATTGGGGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGAAATTGGTGTGTGGGCATGGATTTCACAAGAACTGTATTAGGGCTTGGTTGCTTATAAAAAATACATGTCCCATTTGCCGATATCGATTGCCTCAGCTGCAAAACCCTTTGCTGAATAATAATAATTATGAGCGCCCCAACTTTCAATTGCGGCTTTTTCATCTGCTCTTCTGTCTCTTTCTTACCTTCTTTCTTCTTCTTTTTCTAATGTGGTTTGAAAACGGGGAGATGAATCGACCAACTGCTGATGCAGCAACAATATCAACAGTTATGGAGAGCCTTCCATCGGTGATTTTGATAGAAACAGAAGAAGAAGATGATGATAATGATAATAATGGTGCGCCAATATTAATATTTTTTTGTTGTATTTGTATGGATGAGATTAAAATAGGGGAAGAAGCGAAGCAGTTACCGTGCCGCCATTTGTATCATAGTCTTTGCATTAGGCCCTGGTTGGAGATTAGAACTACTTGTCCACTTTGCCGTCATCAATTATTGCCTACACCAAACTGA

Coding sequence (CDS)

ATGGCGCAGATTCTTTCCGGCAGCGGCGAGGAATCCCAATCCGAAGCCCTAAATTCGAATCTCCTTCCTAAAATGACTCAATCGACGGCCGTATCGGTGACGATTACAATAGAACAGCAAGTATCTCCAGAATCGACAGTAAACGAAACGAGGAGAGAATTAAATGAAGATTTGGAGAACAATAACGATGCGATTTGTTCGATTTGTAGGGAAGAAATTCAATTGGGGAAAGAAGAAGAAGAAGAAGAAGAAGAAGAGAGGAAATTGGTGTGTGGGCATGGATTTCACAAGAACTGTATTAGGGCTTGGTTGCTTATAAAAAATACATGTCCCATTTGCCGATATCGATTGCCTCAGCTGCAAAACCCTTTGCTGAATAATAATAATTATGAGCGCCCCAACTTTCAATTGCGGCTTTTTCATCTGCTCTTCTGTCTCTTTCTTACCTTCTTTCTTCTTCTTTTTCTAATGTGGTTTGAAAACGGGGAGATGAATCGACCAACTGCTGATGCAGCAACAATATCAACAGTTATGGAGAGCCTTCCATCGGTGATTTTGATAGAAACAGAAGAAGAAGATGATGATAATGATAATAATGGTGCGCCAATATTAATATTTTTTTGTTGTATTTGTATGGATGAGATTAAAATAGGGGAAGAAGCGAAGCAGTTACCGTGCCGCCATTTGTATCATAGTCTTTGCATTAGGCCCTGGTTGGAGATTAGAACTACTTGTCCACTTTGCCGTCATCAATTATTGCCTACACCAAACTGA

Protein sequence

MAQILSGSGEESQSEALNSNLLPKMTQSTAVSVTITIEQQVSPESTVNETRRELNEDLENNNDAICSICREEIQLGKEEEEEEEEERKLVCGHGFHKNCIRAWLLIKNTCPICRYRLPQLQNPLLNNNNYERPNFQLRLFHLLFCLFLTFFLLLFLMWFENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQLLPTPN

Homology

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BLAST of Tan0003920 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 5.8e-13
Identity = 31/77 (40.26%), Postives = 48/77 (62.34%), Query Frame = 0


Query: 176 TVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCI 235
           + +E+LP V + ++    + N           C +CMD+ + G EAKQ+PC+HLYH  C+
Sbjct: 202 SAIEALPLVNITKSNLNSEFNQ----------CAVCMDDFEEGTEAKQMPCKHLYHKDCL 261

Query: 236 RPWLEIRTTCPLCRHQL 253
            PWLE+  +CP+CRH+L
Sbjct: 262 LPWLELHNSCPVCRHEL 268

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BLAST of Tan0003920 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 8.4e-12
Identity = 23/45 (51.11%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 208 CCICMDEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           C +C+D++++G +AKQ+PC H +HS CI PWLE+ ++CP+CR +L
Sbjct: 199 CSVCLDDLEVGSQAKQMPCEHKFHSSCILPWLELHSSCPVCRFEL 243

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BLAST of Tan0003920 vs. ExPASy Swiss-Prot
Match: O22197 (Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 7.1e-11
Identity = 28/77 (36.36%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 176 TVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCI 235
           + +++LP++ + +      D++          C +C DE ++G EAKQ+PC H+YHS CI
Sbjct: 168 SAIDALPTIKIAQRHLRSSDSN----------CPVCKDEFELGSEAKQMPCNHIYHSDCI 227

Query: 236 RPWLEIRTTCPLCRHQL 253
            PWL    +CP+CR +L
Sbjct: 228 VPWLVQHNSCPVCRQEL 234

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BLAST of Tan0003920 vs. ExPASy Swiss-Prot
Match: Q8RXD3 (E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-11
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 208 CCICMDEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           CCIC + + IG++ ++LPC+H +H  C++PWL+   +CP+CRH+L
Sbjct: 230 CCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHEL 274

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BLAST of Tan0003920 vs. ExPASy Swiss-Prot
Match: Q6GPV5 (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 9.3e-11
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 0


Query: 177 VMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCIR 236
           V+ESLP V +  T E+ D             C +C+ E + GE  +QLPC HL+HS CI 
Sbjct: 59  VVESLPKVTV--TPEQAD---------AALKCPVCLLEFEEGETVRQLPCEHLFHSACIL 118

Query: 237 PWLEIRTTCPLCRHQL 253
           PWL    +CPLCRH+L
Sbjct: 119 PWLGKTNSCPLCRHEL 123

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BLAST of Tan0003920 vs. NCBI nr
Match: PWA62288.1 (Zinc finger, RING/FYVE/PHD-type [Artemisia annua])

HSP 1 Score: 111.3 bits (277), Expect = 1.2e-20
Identity = 74/215 (34.42%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 56  EDLENNNDAICSICREEIQLGKEEEEEEEEERKLVCGHGFHKNCIRAWLLIKNTCPICRY 115
           ED+E  ND IC++C++E+++GK   +       L C H +H +CI  WL I+NTCP+CR+
Sbjct: 262 EDVE-KNDTICAVCKDEVEVGKLATQ-------LPCSHRYHGDCIVPWLGIRNTCPVCRF 321

Query: 116 RLPQLQNPLLNNNNYERPNFQ---LRLFHLLFCLFLTF------------FLLLFLMWFE 175
            L      L ++  YER   +   L  + + F   + +              +LF  + E
Sbjct: 322 EL------LTDDVEYERRKAERAALLPYEVNFEPNVDYKDDEYEVYNNRESEMLFGQFGE 381

Query: 176 NGE--MNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIG 235
           N    + RP A  A    V+E+L +V++  T+E+ + ND          C +C DE+++G
Sbjct: 382 NDVSCLGRPPASKA----VVENLVTVVM--TKEDVEKNDT--------ICAVCKDEVEVG 441

Query: 236 EEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQLL 254
           + A QLPC H YH  CI PWL I+ TCP+C+ +LL
Sbjct: 442 KMATQLPCSHRYHGDCIVPWLGIKNTCPVCQFELL 448

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BLAST of Tan0003920 vs. NCBI nr
Match: KAF2584887.1 (hypothetical protein F2Q70_00037860 [Brassica cretica])

HSP 1 Score: 106.7 bits (265), Expect = 3.1e-19
Identity = 64/192 (33.33%), Postives = 89/192 (46.35%), Query Frame = 0


Query: 63  DAICSICREEIQLGKEEEEEEEEERKLVCGHGFHKNCIRAWLLIKNTCPICRYRLPQLQN 122
           + +C++C++E+ +       EEE ++L C H +H  CI  WL I+NTCP+CR+ LP    
Sbjct: 33  EVVCAVCKDEMII-------EEEVKRLPCRHLYHGECITPWLGIRNTCPVCRFELP---- 92

Query: 123 PLLNNNNYERPNFQLRLFHLLFCLFLTFFLLLFLMWFENGEMNRPTADAATISTVMESLP 182
              ++ +YER     R    LF                                    L 
Sbjct: 93  --TDDLDYERQRRSQRSESSLF------------------------------------LA 152

Query: 183 SVILIETEEEDD--DNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCIRPWLE 242
              L+     DD  D +  G  +    C +C DE+ I EE K+LPCRHLYH  CI PWL 
Sbjct: 153 GSPLVSYRFNDDCADFERTGEVV----CAVCKDEMIIEEEVKRLPCRHLYHGECITPWLG 171

Query: 243 IRTTCPLCRHQL 253
           IR TCP+CR +L
Sbjct: 213 IRNTCPVCRFEL 171

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BLAST of Tan0003920 vs. NCBI nr
Match: GEW35062.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-17
Identity = 73/236 (30.93%), Postives = 110/236 (46.61%), Query Frame = 0


Query: 56  EDLENNNDAICSICREEIQLGKEEEEEEEEERKLVCGHGFHKNCIRAWLLIKNTCPICRY 115
           ED+E  ND  C++C++E+++GK   +       L C H +H +CI  WL I+NTCP+CR+
Sbjct: 310 EDVE-KNDTTCAVCKDEVEVGKIATQ-------LPCSHWYHGDCIVPWLGIRNTCPVCRF 369

Query: 116 RLPQLQNPLLNNNNYERPNFQLRLFHLL-----FCLFLTFFLLLFLMWFE-NGEMN---- 175
            L      L    +     F L   H         + L + LL+ ++ +E N E+N    
Sbjct: 370 ELLTDDVELTEPESSILVWFDLVRIHYCDSVKWLTVKLKYQLLVIVLLYEVNNELNVDYE 429

Query: 176 ----------------------------RPTADAATISTVMESLPSVILIETEEEDDDND 235
                                       RP A  A    ++E+L +V++  T+E+ + ND
Sbjct: 430 DDEYEAYNNRDYEMFFGQFGENDAACLGRPPASKA----LVENLFTVVM--TKEDLEKND 489

Query: 236 NNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQLL 254
                     C +C DE+ +G+   QLPC H YH  CI PWL IR TCP+ R +LL
Sbjct: 490 T--------ICAVCKDEVGVGKMTTQLPCSHRYHGDCIVPWLGIRNTCPVFRFELL 523

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BLAST of Tan0003920 vs. NCBI nr
Match: PSR96583.1 (E3 ubiquitin-protein like [Actinidia chinensis var. chinensis])

HSP 1 Score: 93.2 bits (230), Expect = 3.5e-15
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 160 ENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGE 219
           EN  + RP A      TV+E+LPSVIL    +ED +NDN         C +C D I +GE
Sbjct: 345 ENALIGRPPAS----KTVLENLPSVIL---TQEDVENDN-------ALCAVCKDGIIVGE 404

Query: 220 EAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           +AKQLPC H YH  CI PWL IR TCP+CR++L
Sbjct: 405 QAKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEL 423

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BLAST of Tan0003920 vs. NCBI nr
Match: PSR95747.1 (E3 ubiquitin-protein like [Actinidia chinensis var. chinensis])

HSP 1 Score: 92.8 bits (229), Expect = 4.6e-15
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = 0


Query: 160 ENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGE 219
           EN  + RP A      TV+E+LPSV+L    +ED +NDN         C +C D I +GE
Sbjct: 351 ENALIGRPPAS----KTVLENLPSVVL---TQEDVENDN-------ALCAVCKDGIIVGE 410

Query: 220 EAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           +AKQLPC H YH  CI PWL IR TCP+CR++L
Sbjct: 411 QAKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEL 429

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BLAST of Tan0003920 vs. ExPASy TrEMBL
Match: A0A2U1MM16 (Zinc finger, RING/FYVE/PHD-type OS=Artemisia annua OX=35608 GN=CTI12_AA368370 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 6.0e-21
Identity = 74/215 (34.42%), Postives = 115/215 (53.49%), Query Frame = 0


Query: 56  EDLENNNDAICSICREEIQLGKEEEEEEEEERKLVCGHGFHKNCIRAWLLIKNTCPICRY 115
           ED+E  ND IC++C++E+++GK   +       L C H +H +CI  WL I+NTCP+CR+
Sbjct: 262 EDVE-KNDTICAVCKDEVEVGKLATQ-------LPCSHRYHGDCIVPWLGIRNTCPVCRF 321

Query: 116 RLPQLQNPLLNNNNYERPNFQ---LRLFHLLFCLFLTF------------FLLLFLMWFE 175
            L      L ++  YER   +   L  + + F   + +              +LF  + E
Sbjct: 322 EL------LTDDVEYERRKAERAALLPYEVNFEPNVDYKDDEYEVYNNRESEMLFGQFGE 381

Query: 176 NGE--MNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIG 235
           N    + RP A  A    V+E+L +V++  T+E+ + ND          C +C DE+++G
Sbjct: 382 NDVSCLGRPPASKA----VVENLVTVVM--TKEDVEKNDT--------ICAVCKDEVEVG 441

Query: 236 EEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQLL 254
           + A QLPC H YH  CI PWL I+ TCP+C+ +LL
Sbjct: 442 KMATQLPCSHRYHGDCIVPWLGIKNTCPVCQFELL 448

[Close]

BLAST of Tan0003920 vs. ExPASy TrEMBL
Match: A0A314UWE3 (RING-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_23425 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 153 LLFLMWFENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICM 212
           LLF  + EN   N  T      + V+E+LPSV+L    +ED DN N         C +C 
Sbjct: 215 LLFGQFSEN--ENASTGRPPAANAVVENLPSVVL---TQEDVDNSN-------ALCAVCK 274

Query: 213 DEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           D++ IGE+AKQLPC H YH  CI PWL IR TCP+CRH+L
Sbjct: 275 DDMNIGEQAKQLPCAHRYHGDCIVPWLRIRNTCPVCRHEL 302

[Close]

BLAST of Tan0003920 vs. ExPASy TrEMBL
Match: A0A5E4F009 (PREDICTED: E3 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009370 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 153 LLFLMWFENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICM 212
           LLF  + EN   N  T      + V+E+LPSV+L    +ED DN N         C +C 
Sbjct: 368 LLFGQFSEN--ENASTGRPPAANAVVENLPSVVL---TQEDVDNSN-------ALCAVCK 427

Query: 213 DEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           D++ IGE+AKQLPC H YH  CI PWL IR TCP+CRH+L
Sbjct: 428 DDMNIGEQAKQLPCAHRYHGDCIVPWLRIRNTCPVCRHEL 455

[Close]

BLAST of Tan0003920 vs. ExPASy TrEMBL
Match: A0A5E4EZZ5 (PREDICTED: E3 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009370 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 153 LLFLMWFENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICM 212
           LLF  + EN   N  T      + V+E+LPSV+L    +ED DN N         C +C 
Sbjct: 366 LLFGQFSEN--ENASTGRPPAANAVVENLPSVVL---TQEDVDNSN-------ALCAVCK 425

Query: 213 DEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           D++ IGE+AKQLPC H YH  CI PWL IR TCP+CRH+L
Sbjct: 426 DDMNIGEQAKQLPCAHRYHGDCIVPWLRIRNTCPVCRHEL 453

[Close]

BLAST of Tan0003920 vs. ExPASy TrEMBL
Match: A0A6P5RYX9 (uncharacterized protein LOC110753377 OS=Prunus avium OX=42229 GN=LOC110753377 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-15
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = 0


Query: 153 LLFLMWFENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICM 212
           LLF  + EN   N  T      + V+E+LPSV+L    +ED DN N         C +C 
Sbjct: 364 LLFGQFSEN--ENASTGRPPAANAVVENLPSVVL---TQEDVDNSN-------ALCAVCK 423

Query: 213 DEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           D++ IGE+AKQLPC H YH  CI PWL IR TCP+CRH+L
Sbjct: 424 DDMNIGEQAKQLPCAHRYHGDCIVPWLRIRNTCPVCRHEL 451

[Close]

BLAST of Tan0003920 vs. TAIR 10
Match: AT5G08139.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.5 bits (197), Expect = 2.2e-15
Identity = 36/80 (45.00%), Postives = 50/80 (62.50%), Query Frame = 0


Query: 173 TISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHS 232
           T  + + +LP V+L+E E +DD             C +C DE+ IG +A QLPC H YHS
Sbjct: 284 TSKSFLNNLP-VVLLEGENDDDGG---------LVCAVCKDEMNIGNKAVQLPCNHKYHS 343

Query: 233 LCIRPWLEIRTTCPLCRHQL 253
            CI PWL++R TCP+CR++L
Sbjct: 344 ECIVPWLKVRNTCPVCRYEL 353

[Close]

BLAST of Tan0003920 vs. TAIR 10
Match: AT3G02340.1 (RING/U-box superfamily protein )

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-13
Identity = 36/93 (38.71%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 160 ENGEMNRPTADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGE 219
           E G    P A      +V++ LP   ++E   E+ D  NN        C +C DE+ + E
Sbjct: 301 ETGIRGNPPA----AKSVIQDLP---VVELAVEELDKGNN-------VCAVCKDEMLVEE 360

Query: 220 EAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           + ++LPC H YH  CI PWL IR TCP+CR++L
Sbjct: 361 KVRRLPCSHFYHGECIIPWLGIRNTCPVCRYEL 379

[Close]

BLAST of Tan0003920 vs. TAIR 10
Match: AT2G44330.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-13
Identity = 31/75 (41.33%), Postives = 46/75 (61.33%), Query Frame = 0


Query: 178 MESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCRHLYHSLCIRP 237
           MESLP++ +  +      +D++  P     C IC ++  +GE A++LPC HLYH+ CI P
Sbjct: 71  MESLPTIKISSSMLSSASSDDSALP-----CAICREDFVVGESARRLPCNHLYHNDCIIP 130

Query: 238 WLEIRTTCPLCRHQL 253
           WL    +CPLCR +L
Sbjct: 131 WLTSHNSCPLCRVEL 140

[Close]

BLAST of Tan0003920 vs. TAIR 10
Match: AT3G60080.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-13
Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 0


Query: 168 TADAATISTVMESLPSVILIETEEEDDDNDNNGAPILIFFCCICMDEIKIGEEAKQLPCR 227
           ++D  +I T+   + S +L  T++ D D+        +  C +C ++  IGE A++LPC 
Sbjct: 139 SSDIDSIPTI--QISSSLLCSTDDSDPDS--------VLLCAVCKEDFIIGESARRLPCS 198

Query: 228 HLYHSLCIRPWLEIRTTCPLCRHQLLPT 256
           H+YHS CI PWL    +CPLCR +L  T
Sbjct: 199 HIYHSDCIVPWLSDHNSCPLCRFELPTT 216

[Close]

BLAST of Tan0003920 vs. TAIR 10
Match: AT5G15820.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-13
Identity = 27/45 (60.00%), Postives = 33/45 (73.33%), Query Frame = 0


Query: 208 CCICMDEIKIGEEAKQLPCRHLYHSLCIRPWLEIRTTCPLCRHQL 253
           C IC DE+   E+ K+LPC+H YH  CI PWL IR TCP+CRH+L
Sbjct: 291 CAICKDEVVFKEKVKRLPCKHYYHGECIIPWLGIRNTCPVCRHEL 335

The following BLAST results are available for this feature:

BLAST of Tan0003920 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CH30	5.8e-13	40.26	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q6AVN2	8.4e-12	51.11	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
O22197	7.1e-11	36.36	Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RH...	[more]
Q8RXD3	9.3e-11	46.67	E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV...	[more]
Q6GPV5	9.3e-11	44.74	E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1	[more]

BLAST of Tan0003920 vs. NCBI nr


Match Name	E-value	Identity	Description
PWA62288.1	1.2e-20	34.42	Zinc finger, RING/FYVE/PHD-type [Artemisia annua]	[more]
KAF2584887.1	3.1e-19	33.33	hypothetical protein F2Q70_00037860 [Brassica cretica]	[more]
GEW35062.1	2.2e-17	30.93	hypothetical protein [Tanacetum cinerariifolium]	[more]
PSR96583.1	3.5e-15	50.54	E3 ubiquitin-protein like [Actinidia chinensis var. chinensis]	[more]
PSR95747.1	4.6e-15	49.46	E3 ubiquitin-protein like [Actinidia chinensis var. chinensis]	[more]

BLAST of Tan0003920 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2U1MM16	6.0e-21	34.42	Zinc finger, RING/FYVE/PHD-type OS=Artemisia annua OX=35608 GN=CTI12_AA368370 PE...	[more]
A0A314UWE3	3.8e-15	48.00	RING-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=209455...	[more]
A0A5E4F009	3.8e-15	48.00	PREDICTED: E3 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009370 PE=4 SV=1	[more]
A0A5E4EZZ5	3.8e-15	48.00	PREDICTED: E3 OS=Prunus dulcis OX=3755 GN=ALMOND_2B009370 PE=4 SV=1	[more]
A0A6P5RYX9	3.8e-15	48.00	uncharacterized protein LOC110753377 OS=Prunus avium OX=42229 GN=LOC110753377 PE...	[more]

BLAST of Tan0003920 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08139.1	2.2e-15	45.00	RING/U-box superfamily protein	[more]
AT3G02340.1	1.6e-13	38.71	RING/U-box superfamily protein	[more]
AT2G44330.1	6.0e-13	41.33	RING/U-box superfamily protein	[more]
AT3G60080.1	6.0e-13	37.50	RING/U-box superfamily protein	[more]
AT5G15820.1	6.0e-13	60.00	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 208..248 e-value: 1.2E-6 score: 38.1 coord: 66..113 e-value: 3.1E-6 score: 36.7
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 208..249 e-value: 6.4E-11 score: 42.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 66..114 score: 11.840146
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 208..249 score: 12.002429
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 65..114 e-value: 7.9E-11 score: 42.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 160..254 e-value: 2.4E-19 score: 70.8 coord: 26..120 e-value: 1.1E-16 score: 62.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 57..127
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 175..255
None	No IPR available	PANTHER	PTHR15710:SF108	E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1	coord: 175..255
None	No IPR available	PANTHER	PTHR15710:SF108	E3 UBIQUITIN-PROTEIN LIGASE CIP8-LIKE ISOFORM X1	coord: 57..127
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 208..249 e-value: 2.03071E-16 score: 69.2529
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 176..254
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 48..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003920.1	Tan0003920.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding