Tan0003895 (gene) Snake gourd v1

Overview


Name	Tan0003895
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Retrotransposon protein
Location	LG09: 1165139 .. 1166166 (-)
RNA-Seq Expression	Tan0003895
Synteny	Tan0003895

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAACTCCTAAAGAAAAAGGTTCTAAGCATGTACGAAATATGATGGAGGACGAGGTGTTAGTCCAAAGTTTGATGCAACTTGTTCAACAAGGTGGGTGGAAAGGTGATAATGGGACTTTTAGGCCTGGATATCTAGTTCAAGTACAAAAATTAATGAAGGAAAAGCTACCAGGAAGCGACATACAGGTGTCACCGAACTTAGAATCAAGAGTAAGGATTCTGAAGAAGCAATATGGAGCTATAGCTGAAATGATGGGTCCGACATGCAGTGGTTTTGGATGGAATGACGAGCGAAAGTGTATTGAAGAAGAGAAATCAATTTTTGATGACTGGGTTAAGGTAAAACACAAATACGATTATTGTGTAAGCCATAAAAACATGCATGAATGAACATGATATAGCTAATGGTTCTTATTTGTGTTACGTAGGGTCACCTCCACGCCCGAGGTCTCAGGAACAAACCATTTCCATTCTTCGATGACCTAGCAATCATCTTCGGGAAAGACAAGGCAACCGACACGAGGGCGGAGACTCCGATTGACATGGCCTCAGTGACAGGCACAGACATAGACGATGACACTAGTCCAGAGTTCCATGATCTCCCTATACCTGATCCACATGTATCTGAAACTGTGTTTGGGGAGGACATATCTACCACATCTAACTCGAGGAATGATGGGCCAGTAGGATCCATAGTGAGTAAGAAAAGGCGCATGGTGCATGGGGAACTCACTGAGGTTTTTCGCTCAGAGATGCGATGTGCCTCGACCCATATCGAGAAGATCGCCCTTTGGCCCAAAGAGAATCATGAAATGGAGTCTGCTCGACGTAAACAGTTGTGTGGAGAACTTCAATCTATCCCTGGAATGGATATGGATGATTGTTTAGCCATAGCCGAGACTTTACTAGCTGACACCACTAAATTTCACTCCTTCCTTGACTACCCACCGGAGTGGAAGTATAAGTGTTGCATGCGGATCTTAGGAAGACAACCAGGGCCCTCCTCTTCGGGATCATCTCACTAG

mRNA sequence

ATGACAACTCCTAAAGAAAAAGGTTCTAAGCATGTACGAAATATGATGGAGGACGAGGTGTTAGTCCAAAGTTTGATGCAACTTGTTCAACAAGGTGGGTGGAAAGGTGATAATGGGACTTTTAGGCCTGGATATCTAGTTCAAGTACAAAAATTAATGAAGGAAAAGCTACCAGGAAGCGACATACAGGTTGGTTTTGGATGGAATGACGAGCGAAAGTGTATTGAAGAAGAGAAATCAATTTTTGATGACTGGGTTAAGGGTCACCTCCACGCCCGAGGTCTCAGGAACAAACCATTTCCATTCTTCGATGACCTAGCAATCATCTTCGGGAAAGACAAGGCAACCGACACGAGGGCGGAGACTCCGATTGACATGGCCTCAGTGACAGGCACAGACATAGACGATGACACTAGTCCAGAGTTCCATGATCTCCCTATACCTGATCCACATGTATCTGAAACTGTGTTTGGGGAGGACATATCTACCACATCTAACTCGAGGAATGATGGGCCAGTAGGATCCATAGTGAGTAAGAAAAGGCGCATGGTGCATGGGGAACTCACTGAGGTTTTTCGCTCAGAGATGCGATGTGCCTCGACCCATATCGAGAAGATCGCCCTTTGGCCCAAAGAGAATCATGAAATGGAGTCTGCTCGACGTAAACAGTTGTGTGGAGAACTTCAATCTATCCCTGGAATGGATATGGATGATTGTTTAGCCATAGCCGAGACTTTACTAGCTGACACCACTAAATTTCACTCCTTCCTTGACTACCCACCGGAGTGGAAGTATAAGTGTTGCATGCGGATCTTAGGAAGACAACCAGGGCCCTCCTCTTCGGGATCATCTCACTAG

Coding sequence (CDS)

ATGACAACTCCTAAAGAAAAAGGTTCTAAGCATGTACGAAATATGATGGAGGACGAGGTGTTAGTCCAAAGTTTGATGCAACTTGTTCAACAAGGTGGGTGGAAAGGTGATAATGGGACTTTTAGGCCTGGATATCTAGTTCAAGTACAAAAATTAATGAAGGAAAAGCTACCAGGAAGCGACATACAGGTTGGTTTTGGATGGAATGACGAGCGAAAGTGTATTGAAGAAGAGAAATCAATTTTTGATGACTGGGTTAAGGGTCACCTCCACGCCCGAGGTCTCAGGAACAAACCATTTCCATTCTTCGATGACCTAGCAATCATCTTCGGGAAAGACAAGGCAACCGACACGAGGGCGGAGACTCCGATTGACATGGCCTCAGTGACAGGCACAGACATAGACGATGACACTAGTCCAGAGTTCCATGATCTCCCTATACCTGATCCACATGTATCTGAAACTGTGTTTGGGGAGGACATATCTACCACATCTAACTCGAGGAATGATGGGCCAGTAGGATCCATAGTGAGTAAGAAAAGGCGCATGGTGCATGGGGAACTCACTGAGGTTTTTCGCTCAGAGATGCGATGTGCCTCGACCCATATCGAGAAGATCGCCCTTTGGCCCAAAGAGAATCATGAAATGGAGTCTGCTCGACGTAAACAGTTGTGTGGAGAACTTCAATCTATCCCTGGAATGGATATGGATGATTGTTTAGCCATAGCCGAGACTTTACTAGCTGACACCACTAAATTTCACTCCTTCCTTGACTACCCACCGGAGTGGAAGTATAAGTGTTGCATGCGGATCTTAGGAAGACAACCAGGGCCCTCCTCTTCGGGATCATCTCACTAG

Protein sequence

MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGSDIQVGFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDIDDDTSPEFHDLPIPDPHVSETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALWPKENHEMESARRKQLCGELQSIPGMDMDDCLAIAETLLADTTKFHSFLDYPPEWKYKCCMRILGRQPGPSSSGSSH

Homology

[Close]

BLAST of Tan0003895 vs. NCBI nr
Match: TYK07921.1 (hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 8.2e-66
Identity = 130/261 (49.81%), Postives = 171/261 (65.52%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH    +EDEVLV+ L+QLV++GGW+ DNGTF+ GYL Q   + +   P  
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPAC 197

Query: 61  DIQVGFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFGKDKATDTRA 120
               GFGWN+ +KCIE EK +FDDWVKGH +A+GL NKPFP+F DL ++FG+D+AT  R 
Sbjct: 198 S---GFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRC 257

Query: 121 ETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHVSETVFGEDISTTSNSRNDGPVGSIVSK 180
           +TP++M+S T  D  +DD      D  IP+PH  E   GED+ +T  S       S  SK
Sbjct: 258 KTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSK 317

Query: 181 KRRMVHGELTEVFRSEMRCASTHIEKIALWPKENHEMESARRKQLCGELQSIPGMDMDDC 240
           KRR   G+L + FR+ MR  S  I KIA W +E  E+ES+  K+L  ELQ+IPGMD+DDC
Sbjct: 318 KRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDC 377

Query: 241 LAIAETLLADTTKFHSFLDYP 261
           L +AE+LL D T  H+FLDYP
Sbjct: 378 LIVAESLLPDPTMLHAFLDYP 395

[Close]

BLAST of Tan0003895 vs. NCBI nr
Match: KAA0050106.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-57
Identity = 136/304 (44.74%), Postives = 166/304 (54.61%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH R    DEVLV+ L+QLV++GGW+ DNGTF+ GYLVQVQKLMKEK+ GS
Sbjct: 1   MASTNSKATKH-RWTTIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  DIQV---------------------------GFGWNDERKCIEEEKSIFDDWVKGHLHAR 120
           +IQV                           GFGWN+ERKCIE EKS+FDDWVK      
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------ 120

Query: 121 GLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHV 180
                                               T  DI +DD      D  IP+PH 
Sbjct: 121 ------------------------------------TARDIEEDDMDINLEDFDIPNPHG 180

Query: 181 SETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALWPKE 240
            E   GED+ +T  S       S  SKKRR   G+L + FR+ MR  S  I KIA W +E
Sbjct: 181 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQRE 240

Query: 241 NHEMESARRKQLCGELQSIPGMDMDDCLAIAETLLADTTKFHSFLDYPPEWKYKCCMRIL 277
             E+ES+  K+L  +LQ+IPGMD+DDCL +AE+LL D T  H+FLDYP EWKY+ CMRIL
Sbjct: 241 KMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 261

[Close]

BLAST of Tan0003895 vs. NCBI nr
Match: KAA0063789.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 208.8 bits (530), Expect = 6.3e-50
Identity = 115/278 (41.37%), Postives = 147/278 (52.88%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQV-QKLMKEKLPG 60
           M +   K +KH    +EDE LV+ L+QLV++GGW+ DN TF+PGYL  V  K+M+     
Sbjct: 52  MASTNSKATKHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYS- 111

Query: 61  SDIQVGFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFGKDKATDTR 120
                 FGWN+ERKCIE EKS+FDDWVKGH +ARGL NK FP+F DL ++FG+D+AT  R
Sbjct: 112 -----RFGWNEERKCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGR 171

Query: 121 AETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHVSETVFGEDISTTSNSRNDGPVGSIVS 180
            +TP+ M S    D  +DD      D  IP+PH  +   GED+++T  S       S  S
Sbjct: 172 CKTPVQMGSQIAKDTEEDDMDINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPS 231

Query: 181 KKRRMVHGELTEVFRSEMRCASTHIEKIALWPKENHEMESARRKQLCGELQSIPGMDMDD 240
           KKRR   G+L   F +                                            
Sbjct: 232 KKRRSYSGDLVNTFHA-------------------------------------------- 275

Query: 241 CLAIAETLLADTTKFHSFLDYPPEWKYKCCMRILGRQP 277
                E+LL D T  H+FLDYP EWKY+ CMRILGRQP
Sbjct: 292 ----IESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 275

[Close]

BLAST of Tan0003895 vs. NCBI nr
Match: TYJ96933.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 202.2 bits (513), Expect = 5.9e-48
Identity = 110/237 (46.41%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH    ++D+ LV+ L+QLV++GGW+ +N TF+P YLVQVQKLMKEK+P S
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  DIQV---------------------------GFGWNDERKCIEEEKSIFDDWVKGHLHAR 120
           +IQV                            FGWN+ERKCIE EKS+FDDWVKGH +AR
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120

Query: 121 GLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHV 180
           GL NKPF +F DL I+FG+DKAT  R +  ++MAS T  D  +DD      D  IP+PH 
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHG 180

Query: 181 SETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALW 210
            E   GED+ +T  S       S  SKKRR   G+L + FR+ M+  S  I KIA W
Sbjct: 181 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 237

[Close]

BLAST of Tan0003895 vs. NCBI nr
Match: XP_008455678.1 (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 202.2 bits (513), Expect = 5.9e-48
Identity = 110/237 (46.41%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH    ++D+ LV+ L+QLV++GGW+ +N TF+P YLVQVQKLMKEK+P S
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  DIQV---------------------------GFGWNDERKCIEEEKSIFDDWVKGHLHAR 120
           +IQV                            FGWN+ERKCIE EKS+FDDWVKGH +AR
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152

Query: 121 GLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHV 180
           GL NKPF +F DL I+FG+DKAT  R +  ++MAS T  D  +DD      D  IP+PH 
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHG 212

Query: 181 SETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALW 210
            E   GED+ +T  S       S  SKKRR   G+L + FR+ M+  S  I KIA W
Sbjct: 213 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 269

[Close]

BLAST of Tan0003895 vs. ExPASy TrEMBL
Match: A0A5D3C7T4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00330 PE=4 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 4.0e-66
Identity = 130/261 (49.81%), Postives = 171/261 (65.52%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH    +EDEVLV+ L+QLV++GGW+ DNGTF+ GYL Q   + +   P  
Sbjct: 138 MASTNSKATKHRWTTIEDEVLVECLLQLVEEGGWRADNGTFKLGYLKQYTAIAEMMGPAC 197

Query: 61  DIQVGFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFGKDKATDTRA 120
               GFGWN+ +KCIE EK +FDDWVKGH +A+GL NKPFP+F DL ++FG+D+AT  R 
Sbjct: 198 S---GFGWNEGQKCIEVEKPVFDDWVKGHPNAQGLLNKPFPYFYDLEVVFGRDRATGGRC 257

Query: 121 ETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHVSETVFGEDISTTSNSRNDGPVGSIVSK 180
           +TP++M+S T  D  +DD      D  IP+PH  E   GED+ +T  S       S  SK
Sbjct: 258 KTPVEMSSQTARDTEEDDMDINLEDFDIPNPHGLEPPSGEDMPSTPTSMTHDAGSSRPSK 317

Query: 181 KRRMVHGELTEVFRSEMRCASTHIEKIALWPKENHEMESARRKQLCGELQSIPGMDMDDC 240
           KRR   G+L + FR+ MR  S  I KIA W +E  E+ES+  K+L  ELQ+IPGMD+DDC
Sbjct: 318 KRRSYSGDLMDTFRASMRETSKEIGKIATWQREKMEIESSLHKRLYAELQTIPGMDVDDC 377

Query: 241 LAIAETLLADTTKFHSFLDYP 261
           L +AE+LL D T  H+FLDYP
Sbjct: 378 LIVAESLLPDPTMLHAFLDYP 395

[Close]

BLAST of Tan0003895 vs. ExPASy TrEMBL
Match: A0A5A7U7F7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001200 PE=4 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 5.2e-58
Identity = 136/304 (44.74%), Postives = 166/304 (54.61%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH R    DEVLV+ L+QLV++GGW+ DNGTF+ GYLVQVQKLMKEK+ GS
Sbjct: 1   MASTNSKATKH-RWTTIDEVLVECLLQLVEEGGWRADNGTFKLGYLVQVQKLMKEKILGS 60

Query: 61  DIQV---------------------------GFGWNDERKCIEEEKSIFDDWVKGHLHAR 120
           +IQV                           GFGWN+ERKCIE EKS+FDDWVK      
Sbjct: 61  NIQVTPNLKSRVKILKKQYIAIAEMMGPACSGFGWNEERKCIEAEKSVFDDWVK------ 120

Query: 121 GLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHV 180
                                               T  DI +DD      D  IP+PH 
Sbjct: 121 ------------------------------------TARDIEEDDMDINLEDFDIPNPHG 180

Query: 181 SETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALWPKE 240
            E   GED+ +T  S       S  SKKRR   G+L + FR+ MR  S  I KIA W +E
Sbjct: 181 LEPPSGEDMPSTPTSMAHDAGSSRPSKKRRSYSGDLMDTFRASMRETSKEIGKIAAWQRE 240

Query: 241 NHEMESARRKQLCGELQSIPGMDMDDCLAIAETLLADTTKFHSFLDYPPEWKYKCCMRIL 277
             E+ES+  K+L  +LQ+IPGMD+DDCL +AE+LL D T  H+FLDYP EWKY+ CMRIL
Sbjct: 241 KMEIESSLHKRLYVDLQTIPGMDVDDCLIVAESLLPDPTMLHAFLDYPAEWKYRKCMRIL 261

[Close]

BLAST of Tan0003895 vs. ExPASy TrEMBL
Match: A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.1e-50
Identity = 115/278 (41.37%), Postives = 147/278 (52.88%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQV-QKLMKEKLPG 60
           M +   K +KH    +EDE LV+ L+QLV++GGW+ DN TF+PGYL  V  K+M+     
Sbjct: 52  MASTNSKATKHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMRPAYS- 111

Query: 61  SDIQVGFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFGKDKATDTR 120
                 FGWN+ERKCIE EKS+FDDWVKGH +ARGL NK FP+F DL ++FG+D+AT  R
Sbjct: 112 -----RFGWNEERKCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGR 171

Query: 121 AETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHVSETVFGEDISTTSNSRNDGPVGSIVS 180
            +TP+ M S    D  +DD      D  IP+PH  +   GED+++T  S       S  S
Sbjct: 172 CKTPVQMGSQIAKDTEEDDMDINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPS 231

Query: 181 KKRRMVHGELTEVFRSEMRCASTHIEKIALWPKENHEMESARRKQLCGELQSIPGMDMDD 240
           KKRR   G+L   F +                                            
Sbjct: 232 KKRRSYSGDLVNTFHA-------------------------------------------- 275

Query: 241 CLAIAETLLADTTKFHSFLDYPPEWKYKCCMRILGRQP 277
                E+LL D T  H+FLDYP EWKY+ CMRILGRQP
Sbjct: 292 ----IESLLPDPTMLHAFLDYPAEWKYRKCMRILGRQP 275

[Close]

BLAST of Tan0003895 vs. ExPASy TrEMBL
Match: A0A5D3BC95 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold220G00380 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48
Identity = 110/237 (46.41%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH    ++D+ LV+ L+QLV++GGW+ +N TF+P YLVQVQKLMKEK+P S
Sbjct: 1   MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 60

Query: 61  DIQV---------------------------GFGWNDERKCIEEEKSIFDDWVKGHLHAR 120
           +IQV                            FGWN+ERKCIE EKS+FDDWVKGH +AR
Sbjct: 61  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 120

Query: 121 GLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHV 180
           GL NKPF +F DL I+FG+DKAT  R +  ++MAS T  D  +DD      D  IP+PH 
Sbjct: 121 GLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHG 180

Query: 181 SETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALW 210
            E   GED+ +T  S       S  SKKRR   G+L + FR+ M+  S  I KIA W
Sbjct: 181 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 237

[Close]

BLAST of Tan0003895 vs. ExPASy TrEMBL
Match: A0A1S3C252 (uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 2.9e-48
Identity = 110/237 (46.41%), Postives = 141/237 (59.49%), Query Frame = 0


Query: 1   MTTPKEKGSKHVRNMMEDEVLVQSLMQLVQQGGWKGDNGTFRPGYLVQVQKLMKEKLPGS 60
           M +   K +KH    ++D+ LV+ L+QLV++GGW+ +N TF+P YLVQVQKLMKEK+P S
Sbjct: 33  MASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

Query: 61  DIQV---------------------------GFGWNDERKCIEEEKSIFDDWVKGHLHAR 120
           +IQV                            FGWN+ERKCIE EKS+FDDWVKGH +AR
Sbjct: 93  NIQVTLNLESRVKFLKKQYTAIAKMMGPACSRFGWNEERKCIEAEKSVFDDWVKGHPNAR 152

Query: 121 GLRNKPFPFFDDLAIIFGKDKATDTRAETPIDMASVTGTDI-DDDTSPEFHDLPIPDPHV 180
           GL NKPF +F DL I+FG+DKAT  R +  ++MAS T  D  +DD      D  IP+PH 
Sbjct: 153 GLLNKPFAYFYDLEIVFGRDKATGGRCKPFVEMASQTARDTEEDDMDINLEDFDIPNPHG 212

Query: 181 SETVFGEDISTTSNSRNDGPVGSIVSKKRRMVHGELTEVFRSEMRCASTHIEKIALW 210
            E   GED+ +T  S       S  SKKRR   G+L + FR+ M+  S  I KIA W
Sbjct: 213 LEPPSGEDMPSTLISMTHDAGSSRPSKKRRSYPGDLMDTFRASMQETSKEIGKIAAW 269

[Close]

BLAST of Tan0003895 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 6.0e-06
Identity = 15/47 (31.91%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 65  GFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFG 112
           GF W++ER+ +  + +++ D++K H  AR    +P P++ DL ++ G
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

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BLAST of Tan0003895 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 49.3 bits (116), Expect = 6.0e-06
Identity = 15/47 (31.91%), Postives = 30/47 (63.83%), Query Frame = 0


Query: 65  GFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFG 112
           GF W++ER+ +  + +++ D++K H  AR    +P P++ DL ++ G
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCG 305

[Close]

BLAST of Tan0003895 vs. TAIR 10
Match: AT5G27260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G29880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 45.4 bits (106), Expect = 8.7e-05
Identity = 44/182 (24.18%), Postives = 78/182 (42.86%), Query Frame = 0


Query: 65  GFGWNDERKCIEEEKSIFDDWVKGHLHARGLRNKPFPFFDDLAIIFGKDKATDTRAETPI 124
           GFGW+   K       ++ D++K H + + LR   F FFD+L IIFG+  AT   A    
Sbjct: 93  GFGWDPLTKRFTASDEVWSDYLKAHPNNKQLRYDTFEFFDELQIIFGEGVATGKNAIGLC 152

Query: 125 DMASVTGTDIDDDTSPEFHDLPIPDPHVSETVFGEDIST-----TSNSRNDGPVGSIVSK 184
           D          ++   E+ D    + +  +T    + S       S+  ++ P   +  +
Sbjct: 153 DSTDGLTYRAGENPRKEYVD-DFDNVYEYDTTTHHESSEHYAPFMSHGTSESP--KLPPR 212

Query: 185 KRRMVHGELTEVFRSEMRCASTHIEKIALWPKENHEMESARRK-QLCGELQSIPGMDMDD 241
           KR       ++   S M   S+ I  I    +E  + E A++K  +   ++ I   D+D+
Sbjct: 213 KRTRSERSTSQKEESPMMVVSSKILDIIQQREERQQNEVAQKKNNVWDAIKEI--SDLDE 269

The following BLAST results are available for this feature:

BLAST of Tan0003895 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003895 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07921.1	8.2e-66	49.81	hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]	[more]
KAA0050106.1	1.1e-57	44.74	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063789.1	6.3e-50	41.37	retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon p...	[more]
TYJ96933.1	5.9e-48	46.41	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008455678.1	5.9e-48	46.41	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]

BLAST of Tan0003895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7T4	4.0e-66	49.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U7F7	5.2e-58	44.74	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7VE44	3.1e-50	41.37	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BC95	2.9e-48	46.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C252	2.9e-48	46.41	uncharacterized protein At2g29880-like OS=Cucumis melo OX=3656 GN=LOC103495792 P...	[more]

BLAST of Tan0003895 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	6.0e-06	31.91	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	6.0e-06	31.91	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G27260.1	8.7e-05	24.18	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 64..270 coord: 5..62
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 64..270 coord: 5..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003895.1	Tan0003895.1	mRNA