Tan0003880 (gene) Snake gourd v1

Overview


Name	Tan0003880
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	AP complex subunit sigma
Location	LG02: 4749731 .. 4752172 (-)
RNA-Seq Expression	Tan0003880
Synteny	Tan0003880

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATAATTACAGCGGAACGACGGAGAAGAAACTGTACTCTGATCGGAGAGATCGAATTTTGGTTGAGGATTTTGGATTTGAAACTTTGATTTCTCAAAGTTCAGACAAAAATGGTAAGTGATTTCATTGCTTTGAATCATTTCTAGGTTTTGATTGTTTCAAGGTTGAAATTGCTTTGTTCAATGCGTTATAGTCTTCCTCTTCATGGATCTGCTTTGCTCTTTCTTTTTGGGACGGTTTAATTGGTTCCTCTTGTAGTGCTGAATTGTTGTTTCGTTCTGAAATTGGTTTGGAGTGGTTTCGGTATTGTAAAGATTCAGATCTTTGCTTAGCTGACATCCGAATTGCCCAACTTTTGTTTCTATTTGTTGTTTGATTCGTCGTGGCTCGTTCCTTTATGTGGCTGCATAGCATCTAGGATTTCAAGAATAGTTGTTTAATCTTGGGGTTTGGATTTAGTCTTGCTCGGTGATTTGGGATTGTAATCATGGTCCGTCCTAACTCCCTCGTTTGATTGTGATGCCCTTGGGCGGAGCTATTTCTTTGCTGTTGAGCTAATAATTGAGTCCGCACTTGTTCAGACTGGAGGAGTGGGGATTCTTGTTTTCATTTCTTTTGTTCTCAAGCTTGTGAGTGTGCTTCCGCCATGAGTTCCTGAATCTTATTCTTGGTCTCTTTTCAGGACTTTTGTAAATTACTCATAAGATCTTATAATTGAGGATTGGAACCCCTTTTGTAGAGCTAGTTGTTTGGCATCTTTGATTTGGGTTTCTTTCATTTTTTTTTCTCAATGAAAGCTTCGTTTCTCATAAAACAATTCTTACCATCCAACTTAAGTTCAGTGTTAATGCCTTCAAATTTTTGGTCCCCCACAAAAGAAAAGATGGCCTAATCTATATCTTACATGGTGTTCTAACTGTTGTTGTTGGTGTAAATTTCCAGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGCTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTGGTCAGCTATTTGCTTCATTATGTAATTTAATTCTAATAGCTTCTTTTAATTTCCAAGCGAAGAGAATATCTGCAAAAGCTTGTTGGCCTTCCACACATCTATGAAGTTGTTTTTGCTTTAATAAGTCTTGGTTGCCCTAGGATCTATTGGTCTTACCATATTGTGGCATGTGATTGTGTCTGCTCATGTTCTTTAAAAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGGTACGTCATGGTCTATTATTGTGTTCTGCAATCCAAATCTTTATTTTGTCTTTGTTTGCCCGTTCTACAGATGATTACTGATTCTATTGGACGTGCAATGCAGATATGCTAGTCTATACTTTTGCATGTGCATTGATCAGAATGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGACCGCTACTTCGGCAGTGTAAGTGAATTTAATTTTAGTTCATAAGGTGTTTAAGTCTATTCTTTTTGCACCTTCTCTTTATTCGACTATCTAAACTGACTTTTATTTTCTTCATTATTGTGATCTTTTATATATGTTTTTAGGTCTGTGAATTGGATTTGATCTTCAACTTTCACAAGGTATTACTCACTTACTTATACTAAAGGTGCACCTTTTCTTTAATTTGTATTTCATTGTCTCTGGCCTGCCAGACATTTGTGTAAGCCCAATGCATCTGAATTACTTGTCCTCTAGCTTCTCGCCAGTAAAATTGGCTTGAGTGGACGTTACATCCTTGATATGAAACCTTGAGTGCGTTGTTTACTTTTTTTTTTTCAACATTGAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGTACTATATCCTTTATCTTTGCAGTACCTTCGTTATGATCTCAGTTTCGCTGATATGGTAATTGATATTCCATTGTAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCGATAAGTAACATAATTGCACAGGCCACCAAGTAGGAATACTTGAGAGTGTATGTGTTCCAGTGTTTGGGAAATTGATTTGTTCTGAAGCATTGTAATTATATGTTATTTGGACTAAATATCAAACAAGTGGATGCCTTATTTTTGCTTATTGCATTTGTAGTATTACACAAATTGCTTTTCTGGTTTTCTAGTGATCCTTTTACCTGGTTAAATGTTCACTGGATTGTTCTATTGTTACTCGCAAATATGTGTTATTGCTTGCTAGAAATATTCGAACTTTGTTTCTTGCCAGGAGCCTATTGCGGCTATAATGAGAAATGGTAGCCAATCCTGC

mRNA sequence

TATAATTACAGCGGAACGACGGAGAAGAAACTGTACTCTGATCGGAGAGATCGAATTTTGGTTGAGGATTTTGGATTTGAAACTTTGATTTCTCAAAGTTCAGACAAAAATGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGCTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGATATGCTAGTCTATACTTTTGCATGTGCATTGATCAGAATGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGACCGCTACTTCGGCAGTGTCTGTGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCGATAAGTAACATAATTGCACAGGCCACCAAGTAGGAATACTTGAGAGTGTATGTGTTCCAGTGTTTGGGAAATTGATTTGTTCTGAAGCATTGTAATTATATGTTATTTGGACTAAATATCAAACAAGTGGATGCCTTATTTTTGCTTATTGCATTTGTAGTATTACACAAATTGCTTTTCTGGTTTTCTAGTGATCCTTTTACCTGGTTAAATGTTCACTGGATTGTTCTATTGTTACTCGCAAATATGTGTTATTGCTTGCTAGAAATATTCGAACTTTGTTTCTTGCCAGGAGCCTATTGCGGCTATAATGAGAAATGGTAGCCAATCCTGC

Coding sequence (CDS)

ATGATTCACTTCGTGCTTCTTATAAGTAGACAAGGAAAAGTGAGGCTGACAAAATGGTATTCTCCTTATTCTCAGAAGGAGAGATCTAAGGTTATCCGTGAGCTTAGTGGAATGATTCTAAATCGGGGGCCTAAGCTTTGTAACTTTGTGGAATGGAGGGGACTCAAAGCTGTCTATAAAAGATATGCTAGTCTATACTTTTGCATGTGCATTGATCAGAATGACAATGAATTAGAGATCCTTGAAATTATTCATCATTATGTTGAGATTTTGGACCGCTACTTCGGCAGTGTCTGTGAATTGGATTTGATCTTCAACTTTCACAAGGCCTATTATATATTGGATGAGCTTCTAATTGCTGGCGAACTCCAAGAATCAAGCAAGAAAACAGTAGCAAGATTGATAGCCGCACAGGATTCGTTGGTGGAGACTGCAAAGGAGCAAGCTAGTTCGATAAGTAACATAATTGCACAGGCCACCAAGTAG

Protein sequence

MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK

Homology

[Close]

BLAST of Tan0003880 vs. ExPASy Swiss-Prot
Match: O23685 (AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 2.6e-80
Identity = 148/160 (92.50%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 161
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Tan0003880 vs. ExPASy Swiss-Prot
Match: Q8LEZ8 (AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.5e-80
Identity = 147/161 (91.30%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. ExPASy Swiss-Prot
Match: B0G185 (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.1e-57
Identity = 102/141 (72.34%), Postives = 125/141 (88.65%), Query Frame = 0


Query: 3   HFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKRY 62
           HF+LL+SRQGK RLTKWYSP++ KE+S+  RE+  M+LNR PKLCNF+EW+  K ++KRY
Sbjct: 4   HFLLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEYKIIFKRY 63

Query: 63  ASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAGE 122
           ASLYF +C D+ DNEL +LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDEL++AGE
Sbjct: 64  ASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGE 123

Query: 123 LQESSKKTVARLIAAQDSLVE 144
           LQE+SKKTV RLI+ QD+L+E
Sbjct: 124 LQETSKKTVLRLISQQDTLLE 144

[Close]

BLAST of Tan0003880 vs. ExPASy Swiss-Prot
Match: Q3ZBS3 (AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.2e-49
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKE 148
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Tan0003880 vs. ExPASy Swiss-Prot
Match: Q9DB50 (AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 9.2e-49
Identity = 94/146 (64.38%), Postives = 112/146 (76.71%), Query Frame = 0


Query: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61
           + F+LL SRQGK+RL KWY P S KE+ K+ REL   +L R PK+C+F+EWR LK VYKR
Sbjct: 1   MQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKR 60

Query: 62  YASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
           YASLYFC  I+  DNEL  LEIIH YVE+LD+YFGSVCELD+IFNF KAY+ILDE L+ G
Sbjct: 61  YASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGG 120

Query: 122 ELQESSKKTVARLIAAQDSLVETAKE 148
           E+QE+SKK V + I   D L E AKE
Sbjct: 121 EVQETSKKNVLKAIEQADLLQEDAKE 146

[Close]

BLAST of Tan0003880 vs. NCBI nr
Match: XP_038888262.1 (AP-1 complex subunit sigma-2 [Benincasa hispida])

HSP 1 Score: 315.1 bits (806), Expect = 3.5e-82
Identity = 160/161 (99.38%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. NCBI nr
Match: XP_008462009.1 (PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 4.6e-82
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. NCBI nr
Match: XP_022135730.1 (AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex subunit sigma-2 [Momordica charantia])

HSP 1 Score: 314.7 bits (805), Expect = 4.6e-82
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. NCBI nr
Match: KAA0050549.1 (AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa])

HSP 1 Score: 313.5 bits (802), Expect = 1.0e-81
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Tan0003880 vs. NCBI nr
Match: XP_004144562.1 (AP-1 complex subunit sigma-1 [Cucumis sativus])

HSP 1 Score: 313.2 bits (801), Expect = 1.3e-81
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. ExPASy TrEMBL
Match: A0A6J1C1K2 (AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-82
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. ExPASy TrEMBL
Match: A0A1S3CGG1 (AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.2e-82
Identity = 159/161 (98.76%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. ExPASy TrEMBL
Match: A0A5D3D5G1 (AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold945G00010 PE=3 SV=1)

HSP 1 Score: 313.5 bits (802), Expect = 5.0e-82
Identity = 158/161 (98.14%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           +IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 78  LIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 137

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ+DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 138 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 197

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 198 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 238

[Close]

BLAST of Tan0003880 vs. ExPASy TrEMBL
Match: A0A0A0K1P7 (AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 6.5e-82
Identity = 158/161 (98.14%), Postives = 160/161 (99.38%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPY+QKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYTQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. ExPASy TrEMBL
Match: A0A6J1JMH4 (AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1)

HSP 1 Score: 311.2 bits (796), Expect = 2.5e-81
Identity = 158/161 (98.14%), Postives = 159/161 (98.76%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNR PKLCNFVEWRGLKAVYK
Sbjct: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRAPKLCNFVEWRGLKAVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFC+CIDQ DNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCLCIDQEDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. TAIR 10
Match: AT4G35410.2 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 299.3 bits (765), Expect = 1.9e-81
Identity = 148/160 (92.50%), Postives = 155/160 (96.88%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCIDQ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQAT 161
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQAT
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQAT 160

[Close]

BLAST of Tan0003880 vs. TAIR 10
Match: AT2G17380.1 (associated protein 19 )

HSP 1 Score: 298.9 bits (764), Expect = 2.5e-81
Identity = 147/161 (91.30%), Postives = 156/161 (96.89%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNF+EWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYTQKERSKVIRELSGVILNRGPKLCNFIEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYASLYFCMCID+ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA
Sbjct: 61  RYASLYFCMCIDEADNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120

Query: 121 GELQESSKKTVARLIAAQDSLVETAKEQASSISNIIAQATK 162
           GELQESSKKTVAR+I+AQD LVE AKE+ASSISNIIAQATK
Sbjct: 121 GELQESSKKTVARIISAQDQLVEVAKEEASSISNIIAQATK 161

[Close]

BLAST of Tan0003880 vs. TAIR 10
Match: AT4G35410.1 (Clathrin adaptor complex small chain family protein )

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-57
Identity = 102/109 (93.58%), Postives = 106/109 (97.25%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MIHFVLL+SRQGKVRLTKWYSPY+QKERSKVIRELSG+ILNRGPKLCNFVEWRG K VYK
Sbjct: 1   MIHFVLLVSRQGKVRLTKWYSPYAQKERSKVIRELSGVILNRGPKLCNFVEWRGYKVVYK 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHK 110
           RYASLYFCMCIDQ DNELE+LEIIHHYVEILDRYFGSVCELDLIFNFHK
Sbjct: 61  RYASLYFCMCIDQEDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHK 109

[Close]

BLAST of Tan0003880 vs. TAIR 10
Match: AT1G47830.1 (SNARE-like superfamily protein )

HSP 1 Score: 157.1 bits (396), Expect = 1.2e-38
Identity = 74/141 (52.48%), Postives = 101/141 (71.63%), Query Frame = 0


Query: 1   MIHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYK 60
           MI F+LL +RQGK RL K+Y P  + E+ KV  E+  +++NR  K  NFVE+R  K +Y+
Sbjct: 1   MIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDAKFTNFVEFRTHKVIYR 60

Query: 61  RYASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
           RYA L+F +C+D  DNEL  LE IH +VEILD +F +VCELDL+FNFHK Y ILDE ++A
Sbjct: 61  RYAGLFFSVCVDITDNELAYLESIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILA 120

Query: 121 GELQESSKKTVARLIAAQDSL 142
           GELQE+SK+ +   ++  + L
Sbjct: 121 GELQETSKRAIIERMSELEKL 141

[Close]

BLAST of Tan0003880 vs. TAIR 10
Match: AT2G19790.1 (SNARE-like superfamily protein )

HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27
Identity = 57/138 (41.30%), Postives = 94/138 (68.12%), Query Frame = 0


Query: 2   IHFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGMILNRGPKLCNFVEWRGLKAVYKR 61
           I F+L++++QG+ RL ++Y   + +ER  +  E+    L R  + C+FVE R  K VY+R
Sbjct: 3   IRFILMVNKQGQTRLAQYYEWLTLEERRALEGEIVRKCLARNDQQCSFVEHRNYKIVYRR 62

Query: 62  YASLYFCMCIDQNDNELEILEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 121
           YASL+F + +D ++NEL ILE IH  VE +D++FG+VCELD++F+  KA+++L+E+++ G
Sbjct: 63  YASLFFMVGVDDDENELAILEFIHLLVETMDKHFGNVCELDIMFHLEKAHFMLEEMVMNG 122

Query: 122 ELQESSKKTVARLIAAQD 140
            + E+SK  +   I   D
Sbjct: 123 CIVETSKANILSPIQLMD 140

The following BLAST results are available for this feature:

BLAST of Tan0003880 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O23685	2.6e-80	92.50	AP-1 complex subunit sigma-2 OS=Arabidopsis thaliana OX=3702 GN=AAP19-2 PE=2 SV=...	[more]
Q8LEZ8	3.5e-80	91.30	AP-1 complex subunit sigma-1 OS=Arabidopsis thaliana OX=3702 GN=AAP19-1 PE=1 SV=...	[more]
B0G185	1.1e-57	72.34	AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum OX=44689 GN=ap1s2 PE=3 ...	[more]
Q3ZBS3	9.2e-49	64.38	AP-1 complex subunit sigma-2 OS=Bos taurus OX=9913 GN=AP1S2 PE=2 SV=1	[more]
Q9DB50	9.2e-49	64.38	AP-1 complex subunit sigma-2 OS=Mus musculus OX=10090 GN=Ap1s2 PE=1 SV=1	[more]

BLAST of Tan0003880 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888262.1	3.5e-82	99.38	AP-1 complex subunit sigma-2 [Benincasa hispida]	[more]
XP_008462009.1	4.6e-82	98.76	PREDICTED: AP-1 complex subunit sigma-2 [Cucumis melo]	[more]
XP_022135730.1	4.6e-82	99.38	AP-1 complex subunit sigma-2 [Momordica charantia] >XP_022135731.1 AP-1 complex ...	[more]
KAA0050549.1	1.0e-81	98.14	AP-1 complex subunit sigma-2 [Cucumis melo var. makuwa] >TYK18789.1 AP-1 complex...	[more]
XP_004144562.1	1.3e-81	98.14	AP-1 complex subunit sigma-1 [Cucumis sativus]	[more]

BLAST of Tan0003880 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1K2	2.2e-82	99.38	AP complex subunit sigma OS=Momordica charantia OX=3673 GN=LOC111007622 PE=3 SV=...	[more]
A0A1S3CGG1	2.2e-82	98.76	AP complex subunit sigma OS=Cucumis melo OX=3656 GN=LOC103500483 PE=3 SV=1	[more]
A0A5D3D5G1	5.0e-82	98.14	AP-1 complex subunit sigma-2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A0A0K1P7	6.5e-82	98.14	AP complex subunit sigma OS=Cucumis sativus OX=3659 GN=Csa_7G029970 PE=3 SV=1	[more]
A0A6J1JMH4	2.5e-81	98.14	AP complex subunit sigma OS=Cucurbita maxima OX=3661 GN=LOC111486525 PE=3 SV=1	[more]

BLAST of Tan0003880 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35410.2	1.9e-81	92.50	Clathrin adaptor complex small chain family protein	[more]
AT2G17380.1	2.5e-81	91.30	associated protein 19	[more]
AT4G35410.1	1.1e-57	93.58	Clathrin adaptor complex small chain family protein	[more]
AT1G47830.1	1.2e-38	52.48	SNARE-like superfamily protein	[more]
AT2G19790.1	2.0e-27	41.30	SNARE-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.450.60		coord: 1..157 e-value: 1.6E-66 score: 224.9
None	No IPR available	PANTHER	PTHR11753:SF49	AP-1 COMPLEX SUBUNIT SIGMA-2	coord: 1..152
IPR016635	Adaptor protein complex, sigma subunit	PIRSF	PIRSF015588	AP_complex_sigma	coord: 1..152 e-value: 8.9E-68 score: 224.8
IPR016635	Adaptor protein complex, sigma subunit	PANTHER	PTHR11753	ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY	coord: 1..152
IPR022775	AP complex, mu/sigma subunit	PFAM	PF01217	Clat_adaptor_s	coord: 1..140 e-value: 9.3E-55 score: 184.5
IPR044733	AP-1 complex subunit sigma	CDD	cd14831	AP1_sigma	coord: 3..143 e-value: 3.6094E-102 score: 287.532
IPR011012	Longin-like domain superfamily	SUPERFAMILY	64356	SNARE-like	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003880.1	Tan0003880.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0030121	AP-1 adaptor complex
molecular_function	GO:0035615	clathrin adaptor activity