Tan0003828 (gene) Snake gourd v1

Overview


Name	Tan0003828
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	protein SRC1-like
Location	LG10: 37227370 .. 37228446 (-)
RNA-Seq Expression	Tan0003828
Synteny	Tan0003828

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGAAGGTACATTGTCAGAGCGCGTGACGCGGTATTGCCGCGTAAAGGGATAAAGAAAAAGGAAAAAAGAAACGCAATTATTAAAGTGATAAAAAACGTCAAAATCACGGATAACTGTGGATATATTGATATAAAATAATACAAACTATATTATTTTTCCTCCTATAAATTAGCTTCCTCCTTCCCAACCAAACAGCCTCATTCCGCAAACTTAGATCCAAACAAACACCGTAAGTAAGCATCACCATCATGTCAGGATTCATCGAGAAAATTGGAGAGAAGCTCCACATAGGAGGAGACCACAAAGGCGAGGAGCACAAGGGCGAGCATCACGAGGCGCACAAAGGCGAGCACCATGAGGAGCACAAGGGCGAGCACGGCGGCAAGTCGGAGCATAAGGAAGGGCTGATCGACAAGATCAAAGACAAGATCCATGGAGATCATCATGATGAGAAAGGTGAAAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGATGGCGAGCACCACCACCACGAAGGCGGCCATAGCAGCAGCAGCGACAGCGACAGCGACTGATCTATCATTCCGATCGTAATTTGGCCGTTTCTCTCTGTGTGTGTCTTTAATAAACTGCTTCTTATCTCTCTGTTTCTCTTTATATCAGCCTCTGTTTTTCGGCTTCTTGTTCACTCGTTTTTAATGTAAAATCCAGTGTGATGTATAATAAAAGGTTGTAATGTTAGCCATTTATCTCCATCTGATCTGATCTGATCTGATCTGATCTGATCTTTAATTTATGAGAGGGGGATAGTTATAGGTTGAGCAATAAAAAACAATTTATGAAGGAAAAAAGTACCAAAAAGAAACTTCCTCAGTCCTCTTCTAAATCTGAGGAAAAGAAAATGATCAATTTCAACTGTAGGCTGAACAAGTATGTCAATTTTTACCACAAATTTTCAAGTGATCTAATTGGACTTATACTTGAATAAATTTTACAATCCCATGAATGTTGCCATTTTTTTAAAGCACAAATTTTCTACCTCCGGGGAGGTAAATTTAGAGTTAGTAAGGGCCTGTTTGGTATGCAATCCGAAAA

mRNA sequence

GTTGGAAGGTACATTGTCAGAGCGCGTGACGCGGTATTGCCGCGTAAAGGGATAAAGAAAAAGGAAAAAAGAAACGCAATTATTAAAGTGATAAAAAACGTCAAAATCACGGATAACTGTGGATATATTGATATAAAATAATACAAACTATATTATTTTTCCTCCTATAAATTAGCTTCCTCCTTCCCAACCAAACAGCCTCATTCCGCAAACTTAGATCCAAACAAACACCGTAAGTAAGCATCACCATCATGTCAGGATTCATCGAGAAAATTGGAGAGAAGCTCCACATAGGAGGAGACCACAAAGGCGAGGAGCACAAGGGCGAGCATCACGAGGCGCACAAAGGCGAGCACCATGAGGAGCACAAGGGCGAGCACGGCGGCAAGTCGGAGCATAAGGAAGGGCTGATCGACAAGATCAAAGACAAGATCCATGGAGATCATCATGATGAGAAAGGTGAAAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGATGGCGAGCACCACCACCACGAAGGCGGCCATAGCAGCAGCAGCGACAGCGACAGCGACTGATCTATCATTCCGATCGTAATTTGGCCGTTTCTCTCTGTGTGTGTCTTTAATAAACTGCTTCTTATCTCTCTGTTTCTCTTTATATCAGCCTCTGTTTTTCGGCTTCTTGTTCACTCGTTTTTAATGTAAAATCCAGTGTGATGTATAATAAAAGGTTGTAATGTTAGCCATTTATCTCCATCTGATCTGATCTGATCTGATCTGATCTGATCTTTAATTTATGAGAGGGGGATAGTTATAGGTTGAGCAATAAAAAACAATTTATGAAGGAAAAAAGTACCAAAAAGAAACTTCCTCAGTCCTCTTCTAAATCTGAGGAAAAGAAAATGATCAATTTCAACTGTAGGCTGAACAAGTATGTCAATTTTTACCACAAATTTTCAAGTGATCTAATTGGACTTATACTTGAATAAATTTTACAATCCCATGAATGTTGCCATTTTTTTAAAGCACAAATTTTCTACCTCCGGGGAGGTAAATTTAGAGTTAGTAAGGGCCTGTTTGGTATGCAATCCGAAAA

Coding sequence (CDS)

ATGTCAGGATTCATCGAGAAAATTGGAGAGAAGCTCCACATAGGAGGAGACCACAAAGGCGAGGAGCACAAGGGCGAGCATCACGAGGCGCACAAAGGCGAGCACCATGAGGAGCACAAGGGCGAGCACGGCGGCAAGTCGGAGCATAAGGAAGGGCTGATCGACAAGATCAAAGACAAGATCCATGGAGATCATCATGATGAGAAAGGTGAAAAGAAGAAGAAGGAGAAGAAGAAGAAGGGCGATGGCGAGCACCACCACCACGAAGGCGGCCATAGCAGCAGCAGCGACAGCGACAGCGACTGA

Protein sequence

MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEHKGEHGGKSEHKEGLIDKIKDKIHGDHHDEKGEKKKKEKKKKGDGEHHHHEGGHSSSSDSDSD

Homology

[Close]

BLAST of Tan0003828 vs. ExPASy Swiss-Prot
Match: O04132 (Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.6e-22
Identity = 74/106 (69.81%), Postives = 79/106 (74.53%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHH----EAHKGEHHEEHKGEHGGK---SEHKEGL 60
           MSG I KI E LH+GG HK EEHKGEHH      HKGEHH EHKGEH G+    EHKEGL
Sbjct: 1   MSGIIHKIEETLHVGG-HKKEEHKGEHHGEHKGEHKGEHHGEHKGEHKGEQHHGEHKEGL 60

Query: 61  IDKIKDKIHGDHHDEKGEKKKKEKKKKGDGEHHHHEGGHSSSSDSD 100
           +DKIKDKIHGD HD KGEKKKK+ KKK +  H HH  GHSSSSDSD
Sbjct: 61  VDKIKDKIHGDGHD-KGEKKKKKDKKKKEHGHDHH--GHSSSSDSD 102

[Close]

BLAST of Tan0003828 vs. ExPASy Swiss-Prot
Match: Q9SLJ2 (Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 4.3e-12
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEHKGEHGGKSEHKEGLIDKIKDK 60
           M+G I KIG+ LHIGG +K  EHK E  E HK +H +EHK       EHKEG++DKIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKE--EEHK-KHVDEHK-----SGEHKEGIVDKIKDK 60

Query: 61  IHGDH---HDEKGEKKKKEKKKKGDGEH--HHHEGGHSSSSDSDSD 102
           IHG     HD +G+    EKKKK D +   HH +G HSSSSDSDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSDSD 98

[Close]

BLAST of Tan0003828 vs. NCBI nr
Match: XP_038903205.1 (protein SRC1 [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 7.3e-25
Identity = 82/107 (76.64%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEHKGEHGGKSE-----HKEGLID 60
           MSGFIEKIGEKLHIGGDH    +KGEHH+ HKGEHH+EHK +HG   E     HKEGLI+
Sbjct: 1   MSGFIEKIGEKLHIGGDH----NKGEHHDGHKGEHHDEHK-KHGKSEEHHGEGHKEGLIE 60

Query: 61  KIKDKIHGDHHDEKGEKKKKEKK-KKGDGEHHHHEGGHSSSSDSDSD 102
           KIKDKIHGD HDEKGEKKKKEKK KK  GEHHHH+GGH SSSDSDSD
Sbjct: 61  KIKDKIHGD-HDEKGEKKKKEKKEKKKKGEHHHHDGGH-SSSDSDSD 100

[Close]

BLAST of Tan0003828 vs. NCBI nr
Match: KAG6596975.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 80/107 (74.77%), Postives = 88/107 (82.24%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEHKGEHGGKSE-----HKEGLID 60
           M+G +EKIGEKLHIGGDHKG EHKGEHHE  K EH  EH+ +HG KSE     HKEGL++
Sbjct: 1   MAGIMEKIGEKLHIGGDHKG-EHKGEHHEKDKHEH--EHEKKHGEKSEHHGEGHKEGLME 60

Query: 61  KIKDKIHGDHHDEKGE-KKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           KIKDKIHGDHHD+KGE KKKKEKKKKG+    HHEGGHSSSSDSDSD
Sbjct: 61  KIKDKIHGDHHDDKGEKKKKKEKKKKGE----HHEGGHSSSSDSDSD 100

[Close]

BLAST of Tan0003828 vs. NCBI nr
Match: XP_022942109.1 (protein SRC1-like [Cucurbita moschata])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEH--KGEHGGKSEHKEGLIDKIK 60
           M+G +EKIGEKLHIGGDHKG EHKGEHHE  K EH ++H  K EH G+  HKEGL++KIK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKG-EHKGEHHEKDKHEHEKKHGEKSEHHGEG-HKEGLMEKIK 60

Query: 61  DKIHGDHHDEKGE-KKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           DKIHGDHHDEKGE KKKKEKKKKG+    HHEGGHSSSSDSDSD
Sbjct: 61  DKIHGDHHDEKGEKKKKKEKKKKGE----HHEGGHSSSSDSDSD 98

[Close]

BLAST of Tan0003828 vs. NCBI nr
Match: XP_023538905.1 (protein SRC1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 82/111 (73.87%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHE---EHKGEHGGKSE-----HKEG 60
           MSG +EKIGEKLHIGGDHKG EHKGEHHE  K EH +   EH+ +HG KSE     HKEG
Sbjct: 1   MSGIMEKIGEKLHIGGDHKG-EHKGEHHEKDKHEHEKDKHEHEKKHGEKSEHHGEGHKEG 60

Query: 61  LIDKIKDKIH-GDHHDEKGE-KKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           L++KIKDKIH GDHHDEKGE KKKKEKKKKG+    HHEGGHSSSSDSDSD
Sbjct: 61  LMEKIKDKIHGGDHHDEKGEKKKKKEKKKKGE----HHEGGHSSSSDSDSD 106

[Close]

BLAST of Tan0003828 vs. NCBI nr
Match: KAG7028450.1 (Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118.6 bits (296), Expect = 3.1e-23
Identity = 77/107 (71.96%), Postives = 84/107 (78.50%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEHKGEHGGKSE-----HKEGLID 60
           M+G +EKIGEKLHIGGD     HKGEHHE  K EH  EH+ +HG KSE     HKEGL++
Sbjct: 1   MAGIMEKIGEKLHIGGD-----HKGEHHEKDKHEHEHEHEKKHGEKSEHHGEGHKEGLME 60

Query: 61  KIKDKIHGDHHDEKGE-KKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           KIKDKIHGDHHDEKGE KKKKEKKKKG+    HHEGGHSSSSDSDSD
Sbjct: 61  KIKDKIHGDHHDEKGEKKKKKEKKKKGE----HHEGGHSSSSDSDSD 98

[Close]

BLAST of Tan0003828 vs. ExPASy TrEMBL
Match: A0A6J1FQD3 (protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.9e-25
Identity = 79/104 (75.96%), Postives = 87/104 (83.65%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEH--KGEHGGKSEHKEGLIDKIK 60
           M+G +EKIGEKLHIGGDHKG EHKGEHHE  K EH ++H  K EH G+  HKEGL++KIK
Sbjct: 1   MAGIMEKIGEKLHIGGDHKG-EHKGEHHEKDKHEHEKKHGEKSEHHGEG-HKEGLMEKIK 60

Query: 61  DKIHGDHHDEKGE-KKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           DKIHGDHHDEKGE KKKKEKKKKG+    HHEGGHSSSSDSDSD
Sbjct: 61  DKIHGDHHDEKGEKKKKKEKKKKGE----HHEGGHSSSSDSDSD 98

[Close]

BLAST of Tan0003828 vs. ExPASy TrEMBL
Match: A0A5A7UF86 (Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007000 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.3e-23
Identity = 76/106 (71.70%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEH-----KGEHGGKSEHKEGLID 60
           MSGFIEKIGEKLHIGGD     HKGEHH+AHKGEHH+EH     K EH G+  HKEG+I+
Sbjct: 1   MSGFIEKIGEKLHIGGD-----HKGEHHDAHKGEHHDEHKKHEKKEEHHGEG-HKEGIIE 60

Query: 61  KIKDKIHG--DHHDEKGEKKKKEKKKKGDGEHHHHEGGHSSSSDSD 100
           KIKDKIHG   HHDEKGEKKKKEKKKKG+  H HH G  SS SDSD
Sbjct: 61  KIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of Tan0003828 vs. ExPASy TrEMBL
Match: A0A1S3B8E4 (protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.3e-23
Identity = 76/106 (71.70%), Postives = 82/106 (77.36%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEH-----KGEHGGKSEHKEGLID 60
           MSGFIEKIGEKLHIGGD     HKGEHH+AHKGEHH+EH     K EH G+  HKEG+I+
Sbjct: 1   MSGFIEKIGEKLHIGGD-----HKGEHHDAHKGEHHDEHKKHEKKEEHHGEG-HKEGIIE 60

Query: 61  KIKDKIHG--DHHDEKGEKKKKEKKKKGDGEHHHHEGGHSSSSDSD 100
           KIKDKIHG   HHDEKGEKKKKEKKKKG+  H HH G  SS SDSD
Sbjct: 61  KIKDKIHGGDGHHDEKGEKKKKEKKKKGEHGHEHHGGDSSSDSDSD 100

[Close]

BLAST of Tan0003828 vs. ExPASy TrEMBL
Match: A0A6J1IAZ2 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 4.3e-23
Identity = 78/105 (74.29%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEH--KGEHGGKSEHKEGLIDKIK 60
           MSG +EKIGEKLHIGGDHKG EHKGEHHE  K EH ++H  K EH G+  HKEGL++KIK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKG-EHKGEHHEKDKHEHEKKHGEKSEHHGEG-HKEGLMEKIK 60

Query: 61  DKIH--GDHHDEKGEKKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           DKIH  GDHHDEKGEKKKK+K+KK  GE  H EGGHSSSSDSDSD
Sbjct: 61  DKIHGGGDHHDEKGEKKKKKKEKKKKGE--HQEGGHSSSSDSDSD 101

[Close]

BLAST of Tan0003828 vs. ExPASy TrEMBL
Match: A0A6J1I7B7 (protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 9.6e-23
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEH--KGEHGGKSEHKEGLIDKIK 60
           MSG +EKIGEKLHIGGDHKG EHKG+HHE  K EH ++H  K EH G+  HKEGL++KIK
Sbjct: 1   MSGIMEKIGEKLHIGGDHKG-EHKGDHHEKDKHEHEKKHGEKSEHHGEG-HKEGLMEKIK 60

Query: 61  DKIH--GDHHDEKGEKKKKEKKKKGDGEHHHHEGGHSSSSDSDSD 102
           DKIH  GDHHDEKGEKKKK+K+KK  GE  H EGGHSSSSDSDSD
Sbjct: 61  DKIHGGGDHHDEKGEKKKKKKEKKKKGE--HQEGGHSSSSDSDSD 101

[Close]

BLAST of Tan0003828 vs. TAIR 10
Match: AT1G54410.1 (dehydrin family protein )

HSP 1 Score: 72.0 bits (175), Expect = 3.1e-13
Identity = 59/106 (55.66%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 1   MSGFIEKIGEKLHIGGDHKGEEHKGEHHEAHKGEHHEEHKGEHGGKSEHKEGLIDKIKDK 60
           M+G I KIG+ LHIGG +K  EHK E  E HK +H +EHK       EHKEG++DKIKDK
Sbjct: 1   MAGLINKIGDALHIGGGNKEGEHKKE--EEHK-KHVDEHK-----SGEHKEGIVDKIKDK 60

Query: 61  IHGDH---HDEKGEKKKKEKKKKGDGEH--HHHEGGHSSSSDSDSD 102
           IHG     HD +G+    EKKKK D +   HH +G HSSSSDSDSD
Sbjct: 61  IHGGEGKSHDGEGKSHDGEKKKKKDKKEKKHHDDGHHSSSSDSDSD 98

The following BLAST results are available for this feature:

BLAST of Tan0003828 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04132	1.6e-22	69.81	Protein SRC1 OS=Glycine max OX=3847 GN=SRC1 PE=2 SV=1	[more]
Q9SLJ2	4.3e-12	55.66	Dehydrin HIRD11 OS=Arabidopsis thaliana OX=3702 GN=HIRD11 PE=1 SV=1	[more]

BLAST of Tan0003828 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903205.1	7.3e-25	76.64	protein SRC1 [Benincasa hispida]	[more]
KAG6596975.1	1.2e-24	74.77	Protein SRC1, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022942109.1	1.6e-24	75.96	protein SRC1-like [Cucurbita moschata]	[more]
XP_023538905.1	1.8e-23	73.87	protein SRC1-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028450.1	3.1e-23	71.96	Protein SRC1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Tan0003828 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FQD3	7.9e-25	75.96	protein SRC1-like OS=Cucurbita moschata OX=3662 GN=LOC111447278 PE=4 SV=1	[more]
A0A5A7UF86	3.3e-23	71.70	Zinc transporter ZIP6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A1S3B8E4	3.3e-23	71.70	protein SRC1 OS=Cucumis melo OX=3656 GN=LOC103486916 PE=4 SV=1	[more]
A0A6J1IAZ2	4.3e-23	74.29	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111473441 PE=4 SV=1	[more]
A0A6J1I7B7	9.6e-23	73.33	protein SRC1-like OS=Cucurbita maxima OX=3661 GN=LOC111471920 PE=4 SV=1	[more]

BLAST of Tan0003828 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G54410.1	3.1e-13	55.66	dehydrin family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..101
None	No IPR available	PANTHER	PTHR34941:SF4	PROTEIN SRC1	coord: 1..99
IPR039285	Dehydrin HIRD11-like	PANTHER	PTHR34941	DEHYDRIN HIRD11	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003828.1	Tan0003828.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding