Tan0003754 (gene) Snake gourd v1

Overview


Name	Tan0003754
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Reverse transcriptase
Location	LG06: 43753967 .. 43757012 (+)
RNA-Seq Expression	Tan0003754
Synteny	Tan0003754

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACGTGTTTGGGTTTGTTTTGGTGGTGTATGGAATGAAAGGGAAAAAGATTACGATGGTGGAGAAGTGAGAGGTTTGGATGTAGACATTGATGTAGGGTTTGATGATCATAGGAAAAGTATATGAATTAAGCGGCATAAACCCTAATGGATTCAAACTTATTATACGACGTTTACTGCAACTGAGGTCGAAAGCTCCTACATTTGTAATTAGAAATGATGCACACTTAAAAAGTTTATTGACATGGGAACAAGTATCCTCAATCCCTATTTATGTATCCACCGAGTCGAAGTTTACTTGTAAACTCGAGATTTCTCTTTGGAATTTCCTTATTAAAAAAAAACAAAAGAAATGAAGAAAAGATAAAAGGAAAACAAGGAAAGAAAAGTTAAAAACCATTTTGGCTTGGTTTGCATTAAAGATAAAGAAGAAAAGAAAATGAAAGAAATGTTTATTATATTATATAAAGTTTTGTTTTGTTTAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAGAGATAAACAAGGAATAAAAAAAGAAAAAGCAAAAAGCAAAAAGGGGTAAAAGACAAAAAGGAAAAAAAAAACAAAAAACAATTCCACGAAACCTTCTTATCATTTTTTTTAAATTCATTTCCTTCTTCATTTACCAAAAGGAAGTTGAGAGCTTCGAGAGGAAGAACTGAAGAGAGAAGAAGAAGGAGAAAAAGCTCTGATTTTGGGATTGAAGAAGAAGAGAGAAGAATTACTCAAGTTCTATGAAATTCTATGATCAATTCAACCATGTTATGATATTTTACTCTTTTCGAGCTCCACAAGAAGAGGTAAGTGTTGACGTTTACGCTTCCTGAAAGCTAACTCCTTTTTAAACAAAGTTCATGAAGGAAACTCGAGCAAATTCTTATGTTAAGTTGTTGTTTTGTGAAGAGGAAGGCAAAAGACAGAATTTGCTGTCAAATCCGAGAAGTCTCTGGTGTTTTGGTTGTTCTGATCTGTATACTTGGAGTTAGAAGCTCTATTAGGTATTGTTGGAAAGAGGATTGAATTTACTACAACTTTTGTGAAGCAATCGTGAGTAGCAAACGATTGGAATATGTCTTAAATCGTAGGACAAATTTATTGTGCAGCAGGAAATTGATTTTGGAAACAGCAGCAGGTGGATTTTAGGGAAGAAGATATTGAGGTATTTCTGAACTAATCGGTTGGGAATCTCAATTTAATGTCTTCATATGATTTTTAGAAGGTTCAAAAAGAAGGACTTTGGTATAAAGTACATCCTTTTTGGATTAGTAAAGAAGAAGTTATGACTGTTTGAAGACAGGGTATAAAATCTGTAAAATGCTAGAAATTTTAATGGTGTGTTTTCTTGTAGTTTTAAGGTTAAAACCATGAGCTCGAGGTTCTAATACATGGATTTGGTTTGTTTGACAGGCCAAGAGGAAATAGGTCGAGTGTACGGGCCAAGGTTCTAGTTCTAACATTGTGAGTGATAAAACGAACTTCCAAAATGATCGTTATGTTGAATTATGTTTTAAGAAATACAAGTTTTGCTAGAATGAAAGGGTTTCAATGTTTATTGTTTTCCTTTAAACACATTTCTATGAGTATTCTTGTTTTCCTAGAAATGTTTTCAAGTGTTCATTGTGAACTTAAATGTCTTGATGAAATTTATAATGAGCATATGTTTATTGATTACCGAGATTTATGGAAATGTTCTGATTTCTAGCAAGTATGATTTAAAGATTTCAAGTTTTATGAACAAGCTGAGTAAGCTTGAGTTTTATGAAAGAAAAGATAAGCAGGCATGTTCAAACATTTTTTTAAAAATGTTTTCTGAGACACGATTGTATGAACGACTGAGATATTGAGTCCGAGGGTTTATGGTACCGTGTGCACACAGGTCATATACTGTTGTCGATGTTGAGTGTACTCTGTGACAACAATGCTGTCGTGAGTGCTGGGCGGGCTCCACTACGACAAAGACGATGAGAGTGCTAGGCGGGCCCCACTACATCGTAGAATAAACGCTGGTTGTACTGGGCGTGCCCTACACAACGTGGATTGTGACATGTTTTTAAAAGAGTTTATATCATTTACATGTCTTACGAGATTTTAACGATATACTTGCTGGTTCTTCTGAAAATCTATTATGATTCCACGTTTATTTTAACATTTGATTACAAATGCATATGCTCATTAGTTTTCAGGTGACATATTTTACAAGTTAAAGATTTTAAACTCAGTCACTCACTGAGTTTCATAGCTCATTCTTCCAGTGTTTTCCAAACTTTTCAGGTAGAGATCGAGCTCTGTACTGAAAGTTCATCGTCAGTAAACTCTTTGAAAGTTCTTAAGTTTGATATTTTGTACGTGGCTAGAGTTGTATCACATGTCTATATGTGTTGTAAATTATTTTGAGAGTTCTATGTAGTTGTAGTTGTAGTTGTTTGTACATTAGAGGTTGTATAAACAATGGGTTGTCTTGTGTTGTTTCTGATGCTCTTGACTTTTTAGTTTCCAAGAGAGACTTAAGAAGAGTTTCTCCTTATGTATGTTTAATAGTTGTCCAGTTTTCGCTGTGTTAAGTTTAAAGTGTTCCATATGCGAACATAGTATGTTTATCAGATAAAACAGGGTCAACAGGTATTGCTAAAAGGTAAACAATGTCTGTTGGCTTCACGCCGTCTTCTGGGCTAAGTTAGCAGGTGGTTCGGGAGGGGGTGTGACAACTTGGTATCAGAGCCAGGTAAGCTCCATGGGAATGAGACAGGGCAAGTTAGCTCTGAGAATAAATTAAAAAGTCATAGCAAGTTATTGAGTTAGTTCAGATTGAACTAGTAGAGTATGGTTCAAGTAAGGATAAGAGTAAGTCCAGTTAGGGCTAAAATGTGAATAGAAGCTAGTAGATTGTGTATTTGAATTAAGTAACCATAGTATGTCTAATATGTTGATATGTTATAGGAGTCATGCCACCACGTACTAGCAGACGACGCAGGCAGGATCAAGACGAGACGCAGGATCCTACCCAAGGGCCAATCTGA

mRNA sequence

ATGCCACGTGTTTGGGTTTGTTTTGGTCATATACTGTTGTCGATGTTGAGTGTACTCTGTGACAACAATGCTGTCGTAGAGATCGAGCTCTGTACTGAAAGTTCATCGTCAGTAAACTCTTTGAAAGTTCTTAAGTTTGATATTTTGTACGTGGCTAGAGTTGTATCACATGTCTATATTTGTTTGTACATTAGAGGAGTCATGCCACCACGTACTAGCAGACGACGCAGGCAGGATCAAGACGAGACGCAGGATCCTACCCAAGGGCCAATCTGA

Coding sequence (CDS)

ATGCCACGTGTTTGGGTTTGTTTTGGTCATATACTGTTGTCGATGTTGAGTGTACTCTGTGACAACAATGCTGTCGTAGAGATCGAGCTCTGTACTGAAAGTTCATCGTCAGTAAACTCTTTGAAAGTTCTTAAGTTTGATATTTTGTACGTGGCTAGAGTTGTATCACATGTCTATATTTGTTTGTACATTAGAGGAGTCATGCCACCACGTACTAGCAGACGACGCAGGCAGGATCAAGACGAGACGCAGGATCCTACCCAAGGGCCAATCTGA

Protein sequence

MPRVWVCFGHILLSMLSVLCDNNAVVEIELCTESSSSVNSLKVLKFDILYVARVVSHVYICLYIRGVMPPRTSRRRRQDQDETQDPTQGPI

Homology

[Close]

BLAST of Tan0003754 vs. NCBI nr
Match: KAA0037515.1 (uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK01990.1 uncharacterized protein E5676_scaffold808G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 1.8e-06
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 12  LLSMLSVLCDNNAVVEIEL---------CTESSSSVNSLKVLKFDILYVARVVSHVY--- 71
           LL  L+VLCDN+A+VEIEL            S S+  S  +++ D +    VV  V    
Sbjct: 119 LLLTLTVLCDNDAIVEIELPVSDTLPMSAESSGSNSRSAGIVREDDVCWLHVVFRVKTAG 178

Query: 72  -----ICLYIRGVMPPRTSRRRRQDQDETQDPTQG 90
                +  + +GVMPPR+SRRRRQ++DETQDPTQG
Sbjct: 179 GPGGGVTTWYQGVMPPRSSRRRRQNKDETQDPTQG 213

[Close]

BLAST of Tan0003754 vs. NCBI nr
Match: KAA0042035.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 8.3e-04
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 13  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVV 72
           LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R  
Sbjct: 143 LSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLELYFESVHVEMFGSVGIIRGD 202

Query: 73  SHVYICLYIR---------GVMPPRTSRRRRQDQDETQDPTQG 90
              ++    R         GVMPPRTSRRRRQ+QD TQDPTQG
Sbjct: 203 DVCWLHAVFRAKTTGGPGGGVMPPRTSRRRRQNQDGTQDPTQG 245

[Close]

BLAST of Tan0003754 vs. NCBI nr
Match: TYK17971.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 8.3e-04
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 13  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVV 72
           LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R  
Sbjct: 143 LSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLELYFESVHVEMFGSVGIIRGD 202

Query: 73  SHVYICLYIR---------GVMPPRTSRRRRQDQDETQDPTQG 90
              ++    R         GVMPPRTSRRRRQ+QD TQDPTQG
Sbjct: 203 DVCWLHAVFRAKTTGGPGGGVMPPRTSRRRRQNQDGTQDPTQG 245

[Close]

BLAST of Tan0003754 vs. ExPASy TrEMBL
Match: A0A5D3BSA6 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001020 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 8.7e-07
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 0


Query: 12  LLSMLSVLCDNNAVVEIEL---------CTESSSSVNSLKVLKFDILYVARVVSHVY--- 71
           LL  L+VLCDN+A+VEIEL            S S+  S  +++ D +    VV  V    
Sbjct: 119 LLLTLTVLCDNDAIVEIELPVSDTLPMSAESSGSNSRSAGIVREDDVCWLHVVFRVKTAG 178

Query: 72  -----ICLYIRGVMPPRTSRRRRQDQDETQDPTQG 90
                +  + +GVMPPR+SRRRRQ++DETQDPTQG
Sbjct: 179 GPGGGVTTWYQGVMPPRSSRRRRQNKDETQDPTQG 213

[Close]

BLAST of Tan0003754 vs. ExPASy TrEMBL
Match: A0A5A7TKT0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G004880 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 13  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVV 72
           LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R  
Sbjct: 143 LSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLELYFESVHVEMFGSVGIIRGD 202

Query: 73  SHVYICLYIR---------GVMPPRTSRRRRQDQDETQDPTQG 90
              ++    R         GVMPPRTSRRRRQ+QD TQDPTQG
Sbjct: 203 DVCWLHAVFRAKTTGGPGGGVMPPRTSRRRRQNQDGTQDPTQG 245

[Close]

BLAST of Tan0003754 vs. ExPASy TrEMBL
Match: A0A5D3D150 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G002770 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 4.0e-04
Identity = 45/103 (43.69%), Postives = 54/103 (52.43%), Query Frame = 0


Query: 13  LSMLSVLCDNNAVVEIEL-----------CTESSSSV------NSLKVLKFDILYVARVV 72
           LS LSVL DN+ VVEIEL            +ES+SS        S+ V  F  + + R  
Sbjct: 143 LSTLSVLRDNDTVVEIELPMPDTLPTSAESSESNSSTLLELYFESVHVEMFGSVGIIRGD 202

Query: 73  SHVYICLYIR---------GVMPPRTSRRRRQDQDETQDPTQG 90
              ++    R         GVMPPRTSRRRRQ+QD TQDPTQG
Sbjct: 203 DVCWLHAVFRAKTTGGPGGGVMPPRTSRRRRQNQDGTQDPTQG 245

The following BLAST results are available for this feature:

BLAST of Tan0003754 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003754 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037515.1	1.8e-06	44.21	uncharacterized protein E6C27_scaffold277G001260 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0042035.1	8.3e-04	43.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
TYK17971.1	8.3e-04	43.69	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Tan0003754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BSA6	8.7e-07	44.21	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TKT0	4.0e-04	43.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67...	[more]
A0A5D3D150	4.0e-04	43.69	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold30...	[more]

BLAST of Tan0003754 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003754.1	Tan0003754.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003824	catalytic activity