Tan0003724 (gene) Snake gourd v1

Overview


Name	Tan0003724
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	Ty3-gypsy retrotransposon protein
Location	LG08: 35316884 .. 35317120 (+)
RNA-Seq Expression	Tan0003724
Synteny	Tan0003724

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACACTTCGTTGAGACTTGCAAAAATGCAGGGACGCGCGGTGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAATGCTTTTGACTGGTACACCGACTTAGAGCCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTAA

mRNA sequence

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACACTTCGTTGAGACTTGCAAAAATGCAGGGACGCGCGGTGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAATGCTTTTGACTGGTACACCGACTTAGAGCCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTAA

Coding sequence (CDS)

ATGCCCACAGGGTACCAACCTCCAAAATTCCAGCAGTTCGACGGGAAGGGCAACCCAAAGCAACACGTTGCACACTTCGTTGAGACTTGCAAAAATGCAGGGACGCGCGGTGACCTCCTGGTGAAGCAATTCGTGCGTACCTTGAAAGGAAATGCTTTTGACTGGTACACCGACTTAGAGCCAGAAACGATTGACAGCTGGGAACAATTCGAGAGAGAATTCCTAAATCGCTTCTAA

Protein sequence

MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLEPETIDSWEQFEREFLNRF

Homology

[Close]

BLAST of Tan0003724 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 262 PESIDSWEQLERDFLNRF 279

[Close]

BLAST of Tan0003724 vs. NCBI nr
Match: KAA0053464.1 (retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 93  PESIDSWEQLERDFLNRF 110

[Close]

BLAST of Tan0003724 vs. NCBI nr
Match: KAA0025354.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 141 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 200

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 201 PESIDSWEQLERDFLNRF 218

[Close]

BLAST of Tan0003724 vs. NCBI nr
Match: KAA0043322.1 (uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 5.4e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 55  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 114

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 115 PESIDSWEQLERDFLNRF 132

[Close]

BLAST of Tan0003724 vs. NCBI nr
Match: XP_022159413.1 (uncharacterized protein LOC111025834 [Momordica charantia])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQ FDGKGNPKQH+AHFVETC+NAGTRGD LVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRF 79
           PETI+SWEQ E+EFLNRF
Sbjct: 93  PETIESWEQLEKEFLNRF 110

[Close]

BLAST of Tan0003724 vs. ExPASy TrEMBL
Match: A0A5A7TJ44 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G002330 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 55  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 114

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 115 PESIDSWEQLERDFLNRF 132

[Close]

BLAST of Tan0003724 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 202 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 261

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 262 PESIDSWEQLERDFLNRF 279

[Close]

BLAST of Tan0003724 vs. ExPASy TrEMBL
Match: A0A5A7SI89 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1204G00380 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 141 MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 200

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 201 PESIDSWEQLERDFLNRF 218

[Close]

BLAST of Tan0003724 vs. ExPASy TrEMBL
Match: A0A5A7UE14 (Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G00120 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 2.6e-36
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQQFDGKGNPKQHVAHF+ETC+ AGTRGDLLVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPHGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRF 79
           PE+IDSWEQ ER+FLNRF
Sbjct: 93  PESIDSWEQLERDFLNRF 110

[Close]

BLAST of Tan0003724 vs. ExPASy TrEMBL
Match: A0A6J1DYQ8 (uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025834 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 70/78 (89.74%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 1   MPTGYQPPKFQQFDGKGNPKQHVAHFVETCKNAGTRGDLLVKQFVRTLKGNAFDWYTDLE 60
           MP GYQPPKFQ FDGKGNPKQH+AHFVETC+NAGTRGD LVKQFVRTLKGNAFDWYTDLE
Sbjct: 33  MPAGYQPPKFQHFDGKGNPKQHIAHFVETCENAGTRGDQLVKQFVRTLKGNAFDWYTDLE 92

Query: 61  PETIDSWEQFEREFLNRF 79
           PETI+SWEQ E+EFLNRF
Sbjct: 93  PETIESWEQLEKEFLNRF 110

The following BLAST results are available for this feature:

BLAST of Tan0003724 vs.


Match Name	E-value	Identity	Description

BLAST of Tan0003724 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047477.1	5.4e-36	91.03	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0053464.1	5.4e-36	91.03	retrotransposon protein putative ty3-gypsy sub-class [Cucumis melo var. makuwa]	[more]
KAA0025354.1	5.4e-36	91.03	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0043322.1	5.4e-36	91.03	uncharacterized protein E6C27_scaffold110G002330 [Cucumis melo var. makuwa]	[more]
XP_022159413.1	1.2e-35	89.74	uncharacterized protein LOC111025834 [Momordica charantia]	[more]

BLAST of Tan0003724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TJ44	2.6e-36	91.03	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold110G00233...	[more]
A0A5A7TZU9	2.6e-36	91.03	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7SI89	2.6e-36	91.03	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7UE14	2.6e-36	91.03	Retrotransposon protein putative ty3-gypsy sub-class OS=Cucumis melo var. makuwa...	[more]
A0A6J1DYQ8	5.8e-36	89.74	uncharacterized protein LOC111025834 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Tan0003724 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003724.1	Tan0003724.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity