Tan0003652 (gene) Snake gourd v1

Overview
NameTan0003652
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptiontRNA_int_end_N2 domain-containing protein
LocationLG10: 66616972 .. 66618409 (+)
RNA-Seq ExpressionTan0003652
SyntenyTan0003652
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCCTACGGATTGGGAAAGCTCTTCAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATGAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCGCAAGTTGCAATTCAGGTTGAGAATTTCAAGAATTTAGACTCTGGGAATCCTTCAATAGGATGGAGCTATTTGGTTATTTTTATGTGTGTGTTTCAATATTTTTATCTGTCTCTAGGAAGCATGCTTCGACTGCTCGATGGAATGATCAGATGGGAATGGCAGAAGTTGTAGAGAACAAGGGCAGCCTTTGAACGACGACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTCAAACTATGATTTTATTATGGTTTTGACATCTCTATTGGTTTTGATATTGATTACAACATTTTTTGGGGAGTTATTCTCTTTCACATTGTCTTTAAGTGATTACTATAAGATAAGGTAATATCATGAAAAATAAAAGAAACTGGTAGTGTTTTGGAGAGTTTTTTTTTGTTGCTTTTTGGTTCTTTATTTAGAACATTACAATACAGATAAAGGGAAGAAATTCAAGCTTACAATGTACACGACGAAGCACTAGTAGTAGTCTTTATGTCTTGGTAAATAAATGAATTCATCATTTTTTAGTACTTTTGAACTAAAGTCCTTTTTCCTATCATTATCTCTGTAGCAATGACATTTTATTGAGCTTATTTGTGTCCCACTATATAATTCATTTTATGTATCACTTATTCTTCATTTCTATTTACAATATATATACATCTATTGTTACTTGGGTAATGTTTATTTTAATGTGTCTCTTGTTTCAGAAAAGTTAGAAGTGTGTTGCCTTGAAGTGTGCCTTGTGCTTTCTAAATGTTGACTATAGTATGAACCTTGGCTCAAAAATAGAGTTGTACCATTTAAGCAGAAATATGTAGGATCATGGTCTCTTTTGAGACATTTAAATGACAATTTTTAAGCATGCTATCAAACATTCTTTTCTATGTTTTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAATGGATGTATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTTGAAATCATAAAGTTCCTTGGTCTGTGAAGGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAACAAAGGAGCGATAAATTTTGAATCAGAAGATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTCATGTTTTTCTTACACATAACAAGTTTAGAAAATCTTCTCCTGGTGACACAAATTTTATGGTCTGCTCGACTAGGTAA

mRNA sequence

ATGGAGCCTACGGATTGGGAAAGCTCTTCAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATGAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCGCAAGTTGCAATTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAATGGATGTATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAACAAAGGAGCGATAAATTTTGAATCAGAAGATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTCATGTTTTTCTTACACATAACAAGTTTAGAAAATCTTCTCCTGGTGACACAAATTTTATGGTCTGCTCGACTAGGTAA

Coding sequence (CDS)

ATGGAGCCTACGGATTGGGAAAGCTCTTCAGGAGCTAGTGGCGATGACGACATTTACGAGCAAGACATGAGAGATGAAGAAGAATGTCTTTGTTCATTTGGGTACATGCGCAAGTTGCAATTCAGATTTCTTATTGAAGTTGGGGCCTTGCATCTTCTTGATTATGATAATTTAAATCTTTCTTTGAAAGATGTATACAAGAAGGTAGCTGAAGGAAAAAATGGATGTATTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGGTGTTAGGAATGGAAATGACATTTCTTCTCGAAGTTCTATATTTGAGAACAAAGGAGCGATAAATTTTGAATCAGAAGATGAGAGGTCGATCTCTGAGCTATTAGATTCCACTCAACTCAATGAAGTGACACCCATTTTTCATGTTTTTCTTACACATAACAAGTTTAGAAAATCTTCTCCTGGTGACACAAATTTTATGGTCTGCTCGACTAGGTAA

Protein sequence

MEPTDWESSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFRFLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDISSRSSIFENKGAINFESEDERSISELLDSTQLNEVTPIFHVFLTHNKFRKSSPGDTNFMVCSTR
Homology
[Close]
BLAST of Tan0003652 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 235.0 bits (598), Expect = 4.8e-58
Identity = 134/221 (60.63%), Postives = 149/221 (67.42%), Query Frame = 0 

Query: 1   MEPTDWESSS-GASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWESSS GASGDD+IYEQD+ DEEECLC+ G MRKLQFR                 
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FL+EVGALHLLD+DN +LSLKDVYKKVAEGKNG
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           C+WEQFEVYRHLKSLGFI           GVRNG+DIS +SSI EN+GA + ES+DERSI
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSI-ENEGAWDLESKDERSI 180

[Close]
BLAST of Tan0003652 vs. NCBI nr
Match: XP_023538818.1 (tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 2.0e-56
Identity = 131/221 (59.28%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                 
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +F SEDE+SI
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSI-ENKGSTDFGSEDEKSI 180

[Close]
BLAST of Tan0003652 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 228.0 bits (580), Expect = 5.8e-56
Identity = 130/221 (58.82%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                 
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G RNG DISS+SSI ENKG+ +F SEDE+SI
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSI-ENKGSTDFGSEDEKSI 180

[Close]
BLAST of Tan0003652 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 228.0 bits (580), Expect = 5.8e-56
Identity = 130/221 (58.82%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                 
Sbjct: 272 MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 331

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 332 LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 391

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G RNG DISS+SSI ENKG+ +F SEDE+SI
Sbjct: 392 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSI-ENKGSTDFGSEDEKSI 451

[Close]
BLAST of Tan0003652 vs. NCBI nr
Match: XP_022940787.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata])

HSP 1 Score: 226.9 bits (577), Expect = 1.3e-55
Identity = 129/221 (58.37%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                 
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G +NG DISS+SSI ENKG+ +F SEDE+SI
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSI-ENKGSTDFGSEDEKSI 180

[Close]
BLAST of Tan0003652 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 235.0 bits (598), Expect = 2.3e-58
Identity = 134/221 (60.63%), Postives = 149/221 (67.42%), Query Frame = 0 

Query: 1   MEPTDWESSS-GASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWESSS GASGDD+IYEQD+ DEEECLC+ G MRKLQFR                 
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FL+EVGALHLLD+DN +LSLKDVYKKVAEGKNG
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           C+WEQFEVYRHLKSLGFI           GVRNG+DIS +SSI EN+GA + ES+DERSI
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSI-ENEGAWDLESKDERSI 180

[Close]
BLAST of Tan0003652 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 6.3e-56
Identity = 129/221 (58.37%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECLCS G MRKLQFR                 
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G +NG DISS+SSI ENKG+ +F SEDE+SI
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSI-ENKGSTDFGSEDEKSI 180

[Close]
BLAST of Tan0003652 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 130/221 (58.82%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECL S G MRKLQFR                 
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +FESEDE+SI
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSI-ENKGSTDFESEDEKSI 180

[Close]
BLAST of Tan0003652 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 130/221 (58.82%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECL S G MRKLQFR                 
Sbjct: 5   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 64

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 65  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 124

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +FESEDE+SI
Sbjct: 125 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSI-ENKGSTDFESEDEKSI 184

[Close]
BLAST of Tan0003652 vs. ExPASy TrEMBL
Match: A0A6J1I794 (tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55
Identity = 130/221 (58.82%), Postives = 146/221 (66.06%), Query Frame = 0 

Query: 1   MEPTDWE-SSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR----------------- 60
           ME TDWE SS GAS DDD +EQD+++EEECL S G MRKLQFR                 
Sbjct: 15  MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 74

Query: 61  ---------------------------FLIEVGALHLLDYDNLNLSLKDVYKKVAEGKNG 120
                                      FLIEVGALHLLD+DN +LSLKDVYKKVAEGK+ 
Sbjct: 75  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 134

Query: 121 CIWEQFEVYRHLKSLGFI-----------GVRNGNDISSRSSIFENKGAINFESEDERSI 166
           CIWEQFEVYRHLKSLG+I           G RNG DISSRSSI ENKG+ +FESEDE+SI
Sbjct: 135 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSI-ENKGSTDFESEDEKSI 194

[Close]
BLAST of Tan0003652 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 0 

Query: 43  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDI 102
           +L E+G L LL D D++ +SLKD+Y ++AEGK GC WE +EVYR+LK LG+I  R+G   
Sbjct: 32  YLSEIGELQLLGDEDDVVISLKDLYGEIAEGKYGCCWENYEVYRYLKGLGYILGRHGVPW 91

Query: 103 SSRSSI-------FENKGAINFESEDERSISELLDSTQLNEVTPIFHVFLTHNKFRKSSP 162
           +++ ++        E+  A  F  +D  S+++LL    + +  P+F V+L +++F+KSSP
Sbjct: 92  TTKYAVNTTPSDEDESLCAAEF-FQDRDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSP 151

[Close]
BLAST of Tan0003652 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-20
Identity = 51/128 (39.84%), Postives = 84/128 (65.62%), Query Frame = 0 

Query: 43  FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNGCIWEQFEVYRHLKSLGFIGVRNGNDI 102
           +L E+G L LL D D++ +SLKD+Y ++AEGK GC WE +EVYR+LK LG+I  R+G   
Sbjct: 32  YLSEIGELQLLGDEDDVVISLKDLYGEIAEGKYGCCWENYEVYRYLKGLGYILGRHGVPW 91

Query: 103 SSRSSI-------FENKGAINFESEDERSISELLDSTQLNEVTPIFHVFLTHNKFRKSSP 162
           +++ ++        E+  A  F  +D  S+++LL    + +  P+F V+L +++F+KSSP
Sbjct: 92  TTKYAVNTTPSDEDESLCAAEF-FQDRDSVTKLLSDMHICDARPVFDVYLPNSQFKKSSP 151

[Close]
BLAST of Tan0003652 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-18
Identity = 62/211 (29.38%), Postives = 101/211 (47.87%), Query Frame = 0 

Query: 1   MEPTDWESSSGASGDDDIYEQDMRDEEECLCSFGYMRKLQFR------------------ 60
           ME  DWE+SS +  +         D++E   S G + KLQFR                  
Sbjct: 1   MEEKDWEASSSSENEGGF----PNDDDEEFHSGGSVPKLQFRVGSSKARWITELGMAEVE 60

Query: 61  --------------------------FLIEVGALHLL-DYDNLNLSLKDVYKKVAEGKNG 120
                                     +L E+G L +L + D++ + LKD+Y+K+AE K+G
Sbjct: 61  VKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKIAEEKSG 120

Query: 121 CIWEQFEVYRHLKSLGFIGVRNGND----ISSRSSIFENKGAINFESEDERSISELLDST 163
           C WE +EVYR+LK LG+I  R+G       ++R +  E          D  ++++LL   
Sbjct: 121 CSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGECPADNDTVTKLLGDM 180

The following BLAST results are available for this feature:
BLAST of Tan0003652 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0003652 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022156818.14.8e-5860.63uncharacterized protein LOC111023660 [Momordica charantia][more]
XP_023538818.12.0e-5659.28tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo][more]
KAG7028441.15.8e-5658.82tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp... [more]
KAG6596967.15.8e-5658.82Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp.... [more]
XP_022940787.11.3e-5558.37tRNA-splicing endonuclease subunit Sen54 [Cucurbita moschata][more]
BLAST of Tan0003652 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DRN32.3e-5860.63uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1FKK46.3e-5658.37tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111... [more]
A0A6J1I8D91.4e-5558.82tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1ICR81.4e-5558.82tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 ... [more]
A0A6J1I7941.4e-5558.82tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 ... [more]
BLAST of Tan0003652 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G02370.11.5e-2039.84unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G02370.21.5e-2039.84unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
AT3G57360.12.3e-1829.38unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR024337tRNA-splicing endonuclease, subunit Sen54PANTHERPTHR21027TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54coord: 43..165

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003652.1Tan0003652.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008033 tRNA processing
cellular_component GO:0140513 nuclear protein-containing complex