Tan0003632 (gene) Snake gourd v1

Overview
NameTan0003632
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG01: 116227430 .. 116228816 (-)
RNA-Seq ExpressionTan0003632
SyntenyTan0003632
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTTTTCAAACCCACTTTTTTACGCAATTTTTATAAACTTAAACTTCTCAAACTTACACCTCTAAATACAAAATTTCTAAACCCTCCACTTAAACATCAAGGCTAAACATTTTCTAGCCTAAAATGTGAATAAACCATGCCTTAAATACATGCATGACCCCACTATCCTTCATTTAGTCTAAGAACAATATTTGACTGCATATTGTTGTGCAAGAATCTCCCTATGCTGCCATTCAATTGTTGACAAGTAGAAAAAATATTTCTCACCTGTCTCTCCTAGTTGTCAACAATTAAATGATGGGGTCAGGAAGATTCATTCACGCCAGTATACAACCAAGTATGAATAATACTTAGCTGCATTGTAGAAATCTCACTGCCCCTACCATTCGCGAAGGACTTTCATGTGGTTCGTTTCTTGGTCTTGGTGCAACTCCAACAACTTCCATTTTTCTTAAGTGTATGCCATTGTAAGGATGATCACTAGAAAAATTCACTAACGCATGCCTATAAGCAGCTAATTTCTTAGATGTTAACTAAAATTCAGAATGGTTGACCAAAACAAGTTGAATATCATTAACAAAAACAGGCAGGAAGCAAGCAGCAAGACCAACAACATTTTATTATTGTTCAAGTGGGCCTTGCACTTTTGCTTACCGCACAGCTCGGGAGATGGGATTCTCACTGTTTTCAATGATTGCGAGCCGTTGTGGTTAAAAAGTGGATATCCGCCGTAAGGAAAATGTCTCAAAGCCAATAAAAATCAACAATTTTTTTAAAACTTTACCTGAGAATCACCAATTATGGTCCGGCGGTGGACGTCAGAGAGAGGTGTTCATCGCTGCTGGGCATTTGGAGTCCCCAGCAAATCTACTTTACAATCCTGCATGTAGAGAATCTGAAAAGGCAGTTAGAGAACAAAAACATAAGTGCTTGGTAAAAAAAAAAAAAAAAAAGGAACAGACTCAGTTTGATAGTTGCTGCAATCAATCAGCCCTGTTGCTGGTAGCTAATATTCAGTCACATGAATGGCAAACTCCCTTTTCTTTTTGGTTGACTGCTGCTTCAAACAGTAGTTTGAATATCTTCCCGAATAAAGAACTCATAATTTTCCAATAGGCGTATAGAATGTGCCAGTGGTGCTGTTGGTAGATGAATCATGAATATTTACTTGTCAAATCTATAAAAAGCAAACTAGCTGGCTGTGATTAATTAGTAGCTCCGGAGAATAAATTAATCAGTCTATCCAATAATCAAGTGGCAGGTAAAACAAAGTTGCCCAAGTTCGATGACTGGGACAAGGTAGTGTCCACACGGAACACGGTTAGCGAACTCCAGAAATTCAGAAAGAGAAAAATTACAAGAATTATAGAGTTTTACTGTAGATAA

mRNA sequence

TTTTTTTCAAACCCACTTTTTTACGCAATTTTTATAAACTTAAACTTCTCAAACTTACACCTCTAAATACAAAATTTCTAAACCCTCCACTTAAACATCAAGGCTAAACATTTTCTAGCCTAAAATGTGAATAAACCATGCCTTAAATACATGCATGACCCCACTATCCTTCATTTAGTCTAAGAACAATATTTGACTGCATATTGTTGTGCAAGAATCTCCCTATGCTGCCATTCAATTGTTGACAAGTAGAAAAAATATTTCTCACCTGTCTCTCCTAGTTGTCAACAATTAAATGATGGGGTCAGGAAGATTCATTCACGCCAGTATACAACCAAGTATGAATAATACTTAGCTGCATTGTAGAAATCTCACTGCCCCTACCATTCGCGAAGGACTTTCATGTGGTTCGTTTCTTGGTCTTGGTGCAACTCCAACAACTTCCATTTTTCTTAAGTGTATGCCATTGTAAGGATGATCACTAGAAAAATTCACTAACGCATGCCTATAAGCAGCTAATTTCTTAGATGTTAACTAAAATTCAGAATGGTTGACCAAAACAAGTTGAATATCATTAACAAAAACAGGCAGGAAGCAAGCAGCAAGACCAACAACATTTTATTATTGTTCAAGTGGGCCTTGCACTTTTGCTTACCGCACAGCTCGGGAGATGGGATTCTCACTGTTTTCAATGATTGCGAGCCGTTGTGGTTAAAAAGTGGATATCCGCCAGAGGTGTTCATCGCTGCTGGGCATTTGGAGTCCCCAGCAAATCTACTTTACAATCCTGCATGTAGAGAATCTGAAAAGGCAGTTAGAGAACAAAAACATAAGTGCTTGAATAAATTAATCAGTCTATCCAATAATCAAGTGGCAGGTAAAACAAAGTTGCCCAAGTTCGATGACTGGGACAAGGTAGTGTCCACACGGAACACGGTTAGCGAACTCCAGAAATTCAGAAAGAGAAAAATTACAAGAATTATAGAGTTTTACTGTAGATAA

Coding sequence (CDS)

ATGGTTGACCAAAACAAGTTGAATATCATTAACAAAAACAGGCAGGAAGCAAGCAGCAAGACCAACAACATTTTATTATTGTTCAAGTGGGCCTTGCACTTTTGCTTACCGCACAGCTCGGGAGATGGGATTCTCACTGTTTTCAATGATTGCGAGCCGTTGTGGTTAAAAAGTGGATATCCGCCAGAGGTGTTCATCGCTGCTGGGCATTTGGAGTCCCCAGCAAATCTACTTTACAATCCTGCATGTAGAGAATCTGAAAAGGCAGTTAGAGAACAAAAACATAAGTGCTTGAATAAATTAATCAGTCTATCCAATAATCAAGTGGCAGGTAAAACAAAGTTGCCCAAGTTCGATGACTGGGACAAGGTAGTGTCCACACGGAACACGGTTAGCGAACTCCAGAAATTCAGAAAGAGAAAAATTACAAGAATTATAGAGTTTTACTGTAGATAA

Protein sequence

MVDQNKLNIINKNRQEASSKTNNILLLFKWALHFCLPHSSGDGILTVFNDCEPLWLKSGYPPEVFIAAGHLESPANLLYNPACRESEKAVREQKHKCLNKLISLSNNQVAGKTKLPKFDDWDKVVSTRNTVSELQKFRKRKITRIIEFYCR
Homology
[Close]
BLAST of Tan0003632 vs. NCBI nr
Match: KGN55477.1 (hypothetical protein Csa_012711 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 77/150 (51.33%), Postives = 93/150 (62.00%), Query Frame = 0 

Query: 1   MVDQ-NKLNIINKNRQEASSKTNNILLLFKWALHFC----LPHSSGDGILTVFNDCEPLW 60
           MVDQ  KLN I + RQ+ASSK     ++ +  L       L   +G    TVFNDCEPLW
Sbjct: 1   MVDQTTKLNFIQRIRQQASSKNQQHFVIVQVGLTLLFTAQLSVDTGWDSHTVFNDCEPLW 60

Query: 61  LKSGYPP------------EVFIAAGHLES-PANLLYNPACRESEKAVREQKHKCLNKLI 120
           LKSGY P            + FIA   + S   NLLYNPA RESEKAVREQK++CL    
Sbjct: 61  LKSGYLPIPNYAPAVDVREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECL---- 120

Query: 121 SLSNNQVAGKTKLPKFDDWDKVVSTRNTVS 133
            +SNNQV GKTKL +F+DWDKVVST++ V+
Sbjct: 121 PISNNQVTGKTKLSEFEDWDKVVSTQDKVT 146

[Close]
BLAST of Tan0003632 vs. ExPASy TrEMBL
Match: A0A0A0L4F8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652890 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 7.6e-24
Identity = 77/150 (51.33%), Postives = 93/150 (62.00%), Query Frame = 0 

Query: 1   MVDQ-NKLNIINKNRQEASSKTNNILLLFKWALHFC----LPHSSGDGILTVFNDCEPLW 60
           MVDQ  KLN I + RQ+ASSK     ++ +  L       L   +G    TVFNDCEPLW
Sbjct: 1   MVDQTTKLNFIQRIRQQASSKNQQHFVIVQVGLTLLFTAQLSVDTGWDSHTVFNDCEPLW 60

Query: 61  LKSGYPP------------EVFIAAGHLES-PANLLYNPACRESEKAVREQKHKCLNKLI 120
           LKSGY P            + FIA   + S   NLLYNPA RESEKAVREQK++CL    
Sbjct: 61  LKSGYLPIPNYAPAVDVREKEFIAGCCIWSLKKNLLYNPARRESEKAVREQKNECL---- 120

Query: 121 SLSNNQVAGKTKLPKFDDWDKVVSTRNTVS 133
            +SNNQV GKTKL +F+DWDKVVST++ V+
Sbjct: 121 PISNNQVTGKTKLSEFEDWDKVVSTQDKVT 146

The following BLAST results are available for this feature:
BLAST of Tan0003632 vs.
Match NameE-valueIdentityDescription
BLAST of Tan0003632 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN55477.11.6e-2351.33hypothetical protein Csa_012711 [Cucumis sativus][more]
BLAST of Tan0003632 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4F87.6e-2451.33Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G652890 PE=4 SV=1[more]
BLAST of Tan0003632 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003632.1Tan0003632.1mRNA