Tan0003525 (gene) Snake gourd v1

Overview


Name	Tan0003525
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	signaling peptide TAXIMIN 1-like
Location	LG05: 76032724 .. 76033105 (+)
RNA-Seq Expression	Tan0003525
Synteny	Tan0003525

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTGCTGCTGTTGTGAGGACTGTGACTGCAGGCCTCTCGGCTTTCTTCTCGGCCTGCCGTTCGCCTTCCTCGCTATCTTCGTTGGCTTCGTCGGTGTTGTTATTTGGATCTTTGGGTTAGTGTGCACTTACCTACATCAAACACGTCTCTCTCTCTCGTTTAATAACTGTTTCGTTTTCGATCTTCTACTTAAAAAGTTTGGCCAAATCTTTTAAATATAGTCATTGAAGCTTGTTTTGATTTGGGTTTTGCAGATCGGTGCTCACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTAGTTGAGTTCGCATTGGCTTTGATCTATGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAAATCCCATGTTAG

mRNA sequence

ATGTGCTGCTGCTGTTGTGAGGACTGTGACTGCAGGCCTCTCGGCTTTCTTCTCGGCCTGCCGTTCGCCTTCCTCGCTATCTTCGTTGGCTTCGTCGGTGTTGTTATTTGGATCTTTGGATCGGTGCTCACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTAGTTGAGTTCGCATTGGCTTTGATCTATGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAAATCCCATGTTAG

Coding sequence (CDS)

ATGTGCTGCTGCTGTTGTGAGGACTGTGACTGCAGGCCTCTCGGCTTTCTTCTCGGCCTGCCGTTCGCCTTCCTCGCTATCTTCGTTGGCTTCGTCGGTGTTGTTATTTGGATCTTTGGATCGGTGCTCACTTGCATATGTCCTTGCTGCTTGTGTGTGACTGTGGTAGTTGAGTTCGCATTGGCTTTGATCTATGCTCCAATTCTAGTCATGAAATGGTTCACCTCCAAAATCCCATGTTAG

Protein sequence

MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFALALIYAPILVMKWFTSKIPC

Homology

[Close]

BLAST of Tan0003525 vs. ExPASy Swiss-Prot
Match: O82275 (Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2)

HSP 1 Score: 109.0 bits (271), Expect = 2.5e-23
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 8  DCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFALALIYAP 67
          D DCRPLGFLLGLPFAFL++ +  +GV+IWI G +L+CICPCCLCVTV+VE A+ LI AP
Sbjct: 3  DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAP 62

Query: 68 ILVMKWFTSKIPC 81
          I VM+WF SKIPC
Sbjct: 63 IHVMEWFMSKIPC 75

[Close]

BLAST of Tan0003525 vs. ExPASy Swiss-Prot
Match: Q1G309 (Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-18
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 10 DCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFALALIYAPIL 69
          DCRPLGFL+GLPFA +A+ +  VG VIWI G+VL+C+CPCC C   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 70 VMKWFTSKIPC 81
          V++WFT  IPC
Sbjct: 63 VLRWFTHSIPC 73

[Close]

BLAST of Tan0003525 vs. NCBI nr
Match: XP_022139803.1 (uncharacterized protein LOC111010630 [Momordica charantia])

HSP 1 Score: 153.3 bits (386), Expect = 8.9e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCCCE C+CRPLGFLLGLPFAFLA+F+GF+G +IWIFGSVLTCICPCCLCVTVVVEFA
Sbjct: 1  MCCCCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. NCBI nr
Match: XP_022955033.1 (uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 uncharacterized protein LOC111801456 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 153.3 bits (386), Expect = 8.9e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCCCEDC+CRPLGFLLGLPFAFLA+FVGFVG++IWIFGSVL+CICPCCLCVTV VEFA
Sbjct: 1  MCCCCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI  PILVMKWFTSKIPC
Sbjct: 61 LALINVPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. NCBI nr
Match: XP_008443051.1 (PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo])

HSP 1 Score: 145.6 bits (366), Expect = 1.9e-31
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCC E C+CRPLGFLLGLPFAFL+IFVGFVGVVIWI GSVL+CICPCC CVTVV+EFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. NCBI nr
Match: XP_004149050.1 (signaling peptide TAXIMIN 1 [Cucumis sativus])

HSP 1 Score: 143.3 bits (360), Expect = 9.2e-31
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCC E C+CRPLGFLL LPFAFL+IFVGFVGVVIWI GSVL+CICPCC CVTVV+EFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. NCBI nr
Match: XP_017978472.1 (PREDICTED: uncharacterized protein LOC18596727 [Theobroma cacao])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 0


Query: 2  CCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFAL 61
          CCCCC+DC+CRPLGFLLGLPFAFL++ +  VG+VIWI G VLTCICPCCLCVT++VEFAL
Sbjct: 3  CCCCCDDCECRPLGFLLGLPFAFLSLLISIVGIVIWIVGLVLTCICPCCLCVTIIVEFAL 62

Query: 62 ALIYAPILVMKWFTSKIPC 81
           LI APILVMKWFTSKIPC
Sbjct: 63 GLIKAPILVMKWFTSKIPC 81

[Close]

BLAST of Tan0003525 vs. ExPASy TrEMBL
Match: A0A6J1CGK2 (uncharacterized protein LOC111010630 OS=Momordica charantia OX=3673 GN=LOC111010630 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.3e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCCCE C+CRPLGFLLGLPFAFLA+F+GF+G +IWIFGSVLTCICPCCLCVTVVVEFA
Sbjct: 1  MCCCCCEKCNCRPLGFLLGLPFAFLALFIGFIGAIIWIFGSVLTCICPCCLCVTVVVEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. ExPASy TrEMBL
Match: A0A6J1GSU1 (uncharacterized protein LOC111457111 OS=Cucurbita moschata OX=3662 GN=LOC111457111 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 4.3e-34
Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCCCEDC+CRPLGFLLGLPFAFLA+FVGFVG++IWIFGSVL+CICPCCLCVTV VEFA
Sbjct: 1  MCCCCCEDCNCRPLGFLLGLPFAFLALFVGFVGIIIWIFGSVLSCICPCCLCVTVAVEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI  PILVMKWFTSKIPC
Sbjct: 61 LALINVPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. ExPASy TrEMBL
Match: A0A1S3B6N4 (uncharacterized protein LOC103486760 OS=Cucumis melo OX=3656 GN=LOC103486760 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.0e-32
Identity = 71/80 (88.75%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCC E C+CRPLGFLLGLPFAFL+IFVGFVGVVIWI GSVL+CICPCC CVTVV+EFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLGLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. ExPASy TrEMBL
Match: A0A0A0LV60 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G478070 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.4e-31
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCC E C+CRPLGFLL LPFAFL+IFVGFVGVVIWI GSVL+CICPCC CVTVV+EFA
Sbjct: 1  MCCCCSEKCNCRPLGFLLSLPFAFLSIFVGFVGVVIWIVGSVLSCICPCCFCVTVVIEFA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALINAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. ExPASy TrEMBL
Match: A0A6A1WIP7 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G011237 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.4e-29
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MCCCCCEDCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFA 60
          MCCCCCEDC+CRPLGFLLGLPFAFL++ +  VG+VIWI G  LTC+CPCCLC TV+VE A
Sbjct: 1  MCCCCCEDCECRPLGFLLGLPFAFLSLLISVVGIVIWIVGLALTCLCPCCLCATVIVELA 60

Query: 61 LALIYAPILVMKWFTSKIPC 81
          LALI APILVMKWFTSKIPC
Sbjct: 61 LALIKAPILVMKWFTSKIPC 80

[Close]

BLAST of Tan0003525 vs. TAIR 10
Match: AT2G31090.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G20562.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-24
Identity = 52/73 (71.23%), Postives = 62/73 (84.93%), Query Frame = 0


Query: 8  DCDCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFALALIYAP 67
          D DCRPLGFLLGLPFAFL++ +  +GV+IWI G +L+CICPCCLCVTV+VE A+ LI AP
Sbjct: 3  DGDCRPLGFLLGLPFAFLSLLLSIIGVIIWIVGLLLSCICPCCLCVTVLVEIAIGLIKAP 62

Query: 68 ILVMKWFTSKIPC 81
          I VM+WF SKIPC
Sbjct: 63 IHVMEWFMSKIPC 75

[Close]

BLAST of Tan0003525 vs. TAIR 10
Match: AT2G20562.1 (unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G31090.1); Has 70 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.3e-19
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 0


Query: 10 DCRPLGFLLGLPFAFLAIFVGFVGVVIWIFGSVLTCICPCCLCVTVVVEFALALIYAPIL 69
          DCRPLGFL+GLPFA +A+ +  VG VIWI G+VL+C+CPCC C   +  FA+ LI  PI 
Sbjct: 3  DCRPLGFLIGLPFALVALVLALVGAVIWIIGTVLSCLCPCCFCFAALANFAVDLIKLPIK 62

Query: 70 VMKWFTSKIPC 81
          V++WFT  IPC
Sbjct: 63 VLRWFTHSIPC 73

The following BLAST results are available for this feature:

BLAST of Tan0003525 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82275	2.5e-23	71.23	Signaling peptide TAXIMIN 1 OS=Arabidopsis thaliana OX=3702 GN=TAX1 PE=2 SV=2	[more]
Q1G309	1.9e-18	59.15	Signaling peptide TAXIMIN 2 OS=Arabidopsis thaliana OX=3702 GN=TAX2 PE=2 SV=1	[more]

BLAST of Tan0003525 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139803.1	8.9e-34	90.00	uncharacterized protein LOC111010630 [Momordica charantia]	[more]
XP_022955033.1	8.9e-34	90.00	uncharacterized protein LOC111457111 [Cucurbita moschata] >XP_023541227.1 unchar...	[more]
XP_008443051.1	1.9e-31	88.75	PREDICTED: uncharacterized protein LOC103486760 [Cucumis melo]	[more]
XP_004149050.1	9.2e-31	87.50	signaling peptide TAXIMIN 1 [Cucumis sativus]	[more]
XP_017978472.1	1.0e-29	81.01	PREDICTED: uncharacterized protein LOC18596727 [Theobroma cacao]	[more]

BLAST of Tan0003525 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGK2	4.3e-34	90.00	uncharacterized protein LOC111010630 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1GSU1	4.3e-34	90.00	uncharacterized protein LOC111457111 OS=Cucurbita moschata OX=3662 GN=LOC1114571...	[more]
A0A1S3B6N4	9.0e-32	88.75	uncharacterized protein LOC103486760 OS=Cucumis melo OX=3656 GN=LOC103486760 PE=...	[more]
A0A0A0LV60	4.4e-31	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G478070 PE=4 SV=1	[more]
A0A6A1WIP7	1.4e-29	80.00	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR2G011237 PE=4 SV=1	[more]

BLAST of Tan0003525 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31090.1	1.8e-24	71.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20562.1	1.3e-19	59.15	unknown protein; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33834:SF9	PROTEIN, PUTATIVE-RELATED	coord: 1..80
None	No IPR available	PANTHER	PTHR33834	SIGNALING PEPTIDE TAXIMIN 2	coord: 1..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003525.1	Tan0003525.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane