Tan0003411 (gene) Snake gourd v1

Overview


Name	Tan0003411
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	low-molecular-weight cysteine-rich 26
Location	LG11: 4782141 .. 4782859 (+)
RNA-Seq Expression	Tan0003411
Synteny	Tan0003411

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAAGTTCTCTTGCTCCCTATTTTTCATTGTTTTCCTCCTTTTCTCAGGTTTGTTTTTTTAGATCTCTATGAAAGTTATTAAATATAGATAATTTAAATTTTTTTTTTGTTTTGATTTTCAAAATTATCATAGCCCTCCATTTTTTTAATTTTTTTAATTTATTGTAGTTTATGTTTGACTAAATATTTGAATTAAGATAGATAAATTACATTTTTTTTAGTTTTAAAAATTTGTTTTTTAAAAATGTTGATCAATCTTCTCTATGGAATTAATATTTTAACATTATTAAATTGAATTTTACAAAATCATGACATTTTTTTAATAATATATATTGCATGTTTTTAGAGGTGGAAATATAGATATACAACCTTTCAAAGAATTAAAGAAGTTTCATTTAGTTGTTGAGTTACATTTATATTGGCACATTTTAATTATATCAAGTTTGTTTAAAAACTTAATATTTTTAGAGAAAAAAAAAAAAAAGTTAAGGCCAATTGATAAATGGGATTGAAAATTTTTGCAGGTGCATTGATGGTGCCTGAAGCAGTTGATGCAGCAAAATGTGAGGAGAAGTTGTATGAAGGATGTGTGTCTAAGGATTGTAGCCAAAGATGTCAACAGAAGTATCCAAATTCATCATCTGAATGTGTTCCAATTCCTCCAATTCCTTATAACTATGTTTGCTATTGCTTCTATGATTGCGCTGCTAATTGA

mRNA sequence

ATGGCAAAGTTCTCTTGCTCCCTATTTTTCATTGTTTTCCTCCTTTTCTCAGGTGCATTGATGGTGCCTGAAGCAGTTGATGCAGCAAAATGTGAGGAGAAGTTGTATGAAGGATGTGTGTCTAAGGATTGTAGCCAAAGATGTCAACAGAAGTATCCAAATTCATCATCTGAATGTGTTCCAATTCCTCCAATTCCTTATAACTATGTTTGCTATTGCTTCTATGATTGCGCTGCTAATTGA

Coding sequence (CDS)

ATGGCAAAGTTCTCTTGCTCCCTATTTTTCATTGTTTTCCTCCTTTTCTCAGGTGCATTGATGGTGCCTGAAGCAGTTGATGCAGCAAAATGTGAGGAGAAGTTGTATGAAGGATGTGTGTCTAAGGATTGTAGCCAAAGATGTCAACAGAAGTATCCAAATTCATCATCTGAATGTGTTCCAATTCCTCCAATTCCTTATAACTATGTTTGCTATTGCTTCTATGATTGCGCTGCTAATTGA

Protein sequence

MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYEGCVSKDCSQRCQQKYPNSSSECVPIPPIPYNYVCYCFYDCAAN

Homology

[Close]

BLAST of Tan0003411 vs. ExPASy Swiss-Prot
Match: Q9M0F2 (Putative defensin-like protein 160 OS=Arabidopsis thaliana OX=3702 GN=LCR26 PE=3 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 5.3e-05
Identity = 31/79 (39.24%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYEG--CVSKDCSQRCQQKYPNSSSE 60
          MAK SCS FFI+ L+FS  LMV E  +  +C   + +G  C   DC   C   Y N   +
Sbjct: 1  MAKLSCSYFFILMLVFSALLMV-ECDEGKRCHTTIDKGNFCDLVDCRLSCFSGY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C   P +P    C C Y+C
Sbjct: 61 CFDDPKVPGRSNCGCLYNC 77

[Close]

BLAST of Tan0003411 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYEGCVSKDCSQRCQQKYPNSSSECV 60
          MAKFSCSLFFI F L S A ++P  V A KCE KLY+GC+ KDC+Q+C  KYPNSSSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 PIPPIPYNYVCYCFYDCAA 80
           +PPIP++Y CYCFYDCAA
Sbjct: 61 AVPPIPFHYSCYCFYDCAA 79

[Close]

BLAST of Tan0003411 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.0e-13
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALM-VPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPN-SSS 60
          M++ S S FFIVFLL S A M +P+  +A  C +KLY+ GCV+ +C QRC  KYPN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVPIPPIPYNYVCYCFYDCA 79
          +C+ +PPIP++  C CFY+CA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

[Close]

BLAST of Tan0003411 vs. NCBI nr
Match: XP_022990690.1 (putative defensin-like protein 129 [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 3.3e-12
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF C L F++ L+ S ALM+PEA  A+ C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHIACLCFFDCPKN 80

[Close]

BLAST of Tan0003411 vs. NCBI nr
Match: XP_022923678.1 (putative defensin-like protein 129 [Cucurbita moschata])

HSP 1 Score: 80.5 bits (197), Expect = 7.3e-12
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF C L F++ L+ S ALM+PEA  A+ C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHVACLCFFDCPKN 80

[Close]

BLAST of Tan0003411 vs. NCBI nr
Match: XP_012090834.1 (defensin-like protein 156 [Jatropha curcas])

HSP 1 Score: 62.8 bits (151), Expect = 1.6e-06
Identity = 33/78 (42.31%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MA  S + FFI+FL+ S + MVP+A    KC+E L+E GCV +DC + C +K+  +   C
Sbjct: 2  MANLSFNNFFILFLIISVSSMVPQARAQKKCQEVLHEIGCVLEDCKKECYEKHNENGGVC 61

Query: 61 VPIPPIPYNYVCYCFYDC 78
          +P      +Y CYCF+ C
Sbjct: 62 IP-NQAKEDYSCYCFWTC 78

[Close]

BLAST of Tan0003411 vs. ExPASy TrEMBL
Match: A0A0A0KU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 1.3e-25
Identity = 55/79 (69.62%), Postives = 64/79 (81.01%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYEGCVSKDCSQRCQQKYPNSSSECV 60
          MAKFSCSLFFI F L S A ++P  V A KCE KLY+GC+ KDC+Q+C  KYPNSSSECV
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWIMPNGVSATKCETKLYDGCLPKDCTQKCSDKYPNSSSECV 60

Query: 61 PIPPIPYNYVCYCFYDCAA 80
           +PPIP++Y CYCFYDCAA
Sbjct: 61 AVPPIPFHYSCYCFYDCAA 79

[Close]

BLAST of Tan0003411 vs. ExPASy TrEMBL
Match: A0A0A0KS76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 4.9e-14
Identity = 44/81 (54.32%), Postives = 59/81 (72.84%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALM-VPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPN-SSS 60
          M++ S S FFIVFLL S A M +P+  +A  C +KLY+ GCV+ +C QRC  KYPN SSS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGCVADECKQRCSAKYPNDSSS 60

Query: 61 ECVPIPPIPYNYVCYCFYDCA 79
          +C+ +PPIP++  C CFY+CA
Sbjct: 61 QCLSLPPIPFHNACLCFYNCA 81

[Close]

BLAST of Tan0003411 vs. ExPASy TrEMBL
Match: A0A6J1JQS7 (putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-12
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF C L F++ L+ S ALM+PEA  A+ C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSAALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHIACLCFFDCPKN 80

[Close]

BLAST of Tan0003411 vs. ExPASy TrEMBL
Match: A0A6J1EAA9 (putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.5e-12
Identity = 40/81 (49.38%), Postives = 54/81 (66.67%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSEC 60
          MAKF C L F++ L+ S ALM+PEA  A+ C E+LYE GC +  C ++C++KY  S+ EC
Sbjct: 1  MAKFCCPLLFLL-LVLSVALMMPEAAQASPCHERLYETGCEASACRKQCEEKYSTSTFEC 60

Query: 61 VPIPPIPYNYVCYCFYDCAAN 81
          VP P  P +  C CF+DC  N
Sbjct: 61 VPNPLHPPHVACLCFFDCPKN 80

[Close]

BLAST of Tan0003411 vs. ExPASy TrEMBL
Match: A0A5A7THQ7 (S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00450 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.2e-06
Identity = 28/79 (35.44%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 4  FSCSLFFIVFLLFSGALMVPE-AVDAAKCEEKLYE-GCVSKDCSQRCQQKYPNSSSECVP 63
          +S  +  I   +    ++VP+ A+   +C++KLY+ GC   DC Q+C +K+ ++S +C+P
Sbjct: 5  YSSWILTIALTIAVAMILVPQGALAVRRCQDKLYDTGCTLADCGQKCWEKHHDASHQCIP 64

Query: 64 IPPIPYNYVCYCFYDCAAN 81
            P    Y CYCFY+C  N
Sbjct: 65 TDPGQTIYACYCFYNCGQN 83

[Close]

BLAST of Tan0003411 vs. TAIR 10
Match: AT4G29290.1 (low-molecular-weight cysteine-rich 26 )

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-06
Identity = 31/79 (39.24%), Postives = 40/79 (50.63%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYEG--CVSKDCSQRCQQKYPNSSSE 60
          MAK SCS FFI+ L+FS  LMV E  +  +C   + +G  C   DC   C   Y N   +
Sbjct: 1  MAKLSCSYFFILMLVFSALLMV-ECDEGKRCHTTIDKGNFCDLVDCRLSCFSGY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C   P +P    C C Y+C
Sbjct: 61 CFDDPKVPGRSNCGCLYNC 77

[Close]

BLAST of Tan0003411 vs. TAIR 10
Match: AT4G29280.1 (low-molecular-weight cysteine-rich 22 )

HSP 1 Score: 42.4 bits (98), Expect = 2.1e-04
Identity = 28/79 (35.44%), Postives = 41/79 (51.90%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYEG--CVSKDCSQRCQQKYPNSSSE 60
          MAK SCS FF++ L+FS   +V +A    +C   ++ G  C   DC Q C  +Y N   +
Sbjct: 1  MAKISCSSFFVLMLVFSVFSLVEKAKGDERCTIIIHPGSPCDPSDCVQYCYAEY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C+   P   +  C C Y+C
Sbjct: 61 CIASKP-GRSANCMCTYNC 77

[Close]

BLAST of Tan0003411 vs. TAIR 10
Match: AT4G29305.1 (low-molecular-weight cysteine-rich 25 )

HSP 1 Score: 40.8 bits (94), Expect = 6.0e-04
Identity = 27/79 (34.18%), Postives = 37/79 (46.84%), Query Frame = 0


Query: 1  MAKFSCSLFFIVFLLFSGALMVPEAVDAAKCEEKLYE--GCVSKDCSQRCQQKYPNSSSE 60
          MAK SCS F ++ L+FS  LMV E  +  +C   + +   C   DC   C   Y N   +
Sbjct: 1  MAKLSCSYFLVLILVFSAFLMV-ERAEGKRCHLTIDKATACSLSDCRLSCYSGY-NGVGK 60

Query: 61 CVPIPPIPYNYVCYCFYDC 78
          C   P +     C C Y+C
Sbjct: 61 CFDDPKVAGPSNCGCIYNC 77

The following BLAST results are available for this feature:

BLAST of Tan0003411 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M0F2	5.3e-05	39.24	Putative defensin-like protein 160 OS=Arabidopsis thaliana OX=3702 GN=LCR26 PE=3...	[more]

BLAST of Tan0003411 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52439.1	2.6e-25	69.62	hypothetical protein Csa_009048 [Cucumis sativus]	[more]
KGN52438.1	1.0e-13	54.32	hypothetical protein Csa_008032 [Cucumis sativus]	[more]
XP_022990690.1	3.3e-12	49.38	putative defensin-like protein 129 [Cucurbita maxima]	[more]
XP_022923678.1	7.3e-12	49.38	putative defensin-like protein 129 [Cucurbita moschata]	[more]
XP_012090834.1	1.6e-06	42.31	defensin-like protein 156 [Jatropha curcas]	[more]

BLAST of Tan0003411 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KU45	1.3e-25	69.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1	[more]
A0A0A0KS76	4.9e-14	54.32	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1	[more]
A0A6J1JQS7	1.6e-12	49.38	putative defensin-like protein 129 OS=Cucurbita maxima OX=3661 GN=LOC111487504 P...	[more]
A0A6J1EAA9	3.5e-12	49.38	putative defensin-like protein 129 OS=Cucurbita moschata OX=3662 GN=LOC111431316...	[more]
A0A5A7THQ7	2.2e-06	35.44	S locus-related glycoprotein 1 binding pollen coat OS=Cucumis melo var. makuwa O...	[more]

BLAST of Tan0003411 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G29290.1	3.7e-06	39.24	low-molecular-weight cysteine-rich 26	[more]
AT4G29280.1	2.1e-04	35.44	low-molecular-weight cysteine-rich 22	[more]
AT4G29305.1	6.0e-04	34.18	low-molecular-weight cysteine-rich 25	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 28..77 e-value: 2.6E-8 score: 34.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003411.1	Tan0003411.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism