Tan0003386 (gene) Snake gourd v1

Overview


Name	Tan0003386
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	DNA-directed RNA polymerase subunit beta'
Location	LG05: 27162969 .. 27165764 (+)
RNA-Seq Expression	Tan0003386
Synteny	Tan0003386

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCGAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATGTGTGATTTGATCAAAATTTTGATTTTACAGATTCAGAATGAGAAACTGTCATCCCAGTCAATCGAATTGGGATGCCCCGGATCTGACGTGTGGCTTGCTTGGTAGGAGTACCATGAAGCTCAGAATTTTGGGTGGAGTCAATACTCCCATCCCAAATAAAAGGGGAATTGGTCTATGGTCGATTCAGTAATAAATAGGAATTTTTAGTTCTACCTCGTGAAAAAAAACTTATTTCTTTTGTGTAATTAACCATTCCTTTTTCTTTCAGAAAGAAATGAAATTCTGTTCAAATAAGCAAATATGTCATGGTTAAAGGAGTCTATCCATCGCATATAGGCTTTAAGGACATCGTGGCATAACCGTCGAGGTGAAGTAGGGACCTAAAAGATCGAATGGAACGATACAAAGACAAGTAAATCCCTTATGAATTCCAAGGTACTCCTTATTAATTTTCATTAAGGGGATTCGTCATTCCAAGGGAAATAGACTACTCAAAAATTTCACATTTCTTTTTTTTTTGATGGTGTAATTGATATATTGAATAAAGAACTCAGAAAATTTAAATAAAAAAGCAAAAGAATCAATGAAATGCTGTTTGGTCTTAATTGAGAACTTGAGTAAAGAGTAGTTGGGGGTTTTATGGAATTTGAAAGCGGGAACTCCTTTATTTGATGTAACTACTTGAGCCGGATGAAACGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGGGAAGAAGGACCCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATCGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATGTAATCGCAAAAATCATCAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTCAAAAGTATAAAAAAAAAAATTCTTTGTATATACATTCGAACCACTGTTGGGCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTACTCATATGGTACCTAA

mRNA sequence

ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCGAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATCCGGATGAAACGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGGGAAGAAGGACCCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATCGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATGTAATCGCAAAAATCATCAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTCAAAAGTATAAAAAAAAAAATTCTTTGTATATACATTCGAACCACTGTTGGGCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTACTCATATGGTACCTAA

Coding sequence (CDS)

ATGATCGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCGAATGGCGAGATAGTTGGAGAGGTAACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATTATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGAAGATATCAAATGGGCTATATTAAACTGGCATGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATCCGGATGAAACGAAACTTTCACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCTTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAATATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTCGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAATTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGGGAAGAAGGACCCGCGGGTAATGAATGGGAAGATCGAAAAGTTGGAAGAAGAAAGGATTTTTTGGTTAGACGTATCGAATTAGCTAAGCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCAGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATGTAATCGCAAAAATCATCAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATAGTCAAAAGTATAAAAAAAAAAATTCTTTGTATATACATTCGAACCACTGTTGGGCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTACTCATATGGTACCTAA

Protein sequence

MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT

Homology

[Close]

BLAST of Tan0003386 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 1377.5 bits (3564), Expect = 0.0e+00
Identity = 675/702 (96.15%), Postives = 678/702 (96.58%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPSNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKK+ILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Tan0003386 vs. ExPASy Swiss-Prot
Match: B1A926 (DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1331.2 bits (3444), Expect = 0.0e+00
Identity = 647/702 (92.17%), Postives = 667/702 (95.01%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANRILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPI KKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPITKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDL++IIDYS +E
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLQIIIDYSFLE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGP GNEWEDRK+GRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTF+IRGLIRQH ASN+GVAKSKIREKEPI+WEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFVIRGLIRQHLASNMGVAKSKIREKEPIIWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLS AIGDPISVPTQDML+GLYVLTSG RRGICANRYNPCNRKN+QNE+I +NNYKYTKE
Sbjct: 541 LLSPAIGDPISVPTQDMLMGLYVLTSGTRRGICANRYNPCNRKNYQNERIDDNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRW+LDQRVIASREAPIEVHYESLGT+HEIYG+YL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWQLDQRVIASREAPIEVHYESLGTYHEIYGHYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IV+S+KK+ILCIYIRTTVGHISLYREIEEAIQGFCRA SY T
Sbjct: 661 IVRSVKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYDT 680

[Close]

BLAST of Tan0003386 vs. ExPASy Swiss-Prot
Match: Q68S15 (DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 1317.8 bits (3409), Expect = 0.0e+00
Identity = 645/703 (91.75%), Postives = 665/703 (94.59%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQIS WANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISTWANKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIG++KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGNEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+IID SLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDSSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGE+GP GNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEDGPTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQP+LVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPVLVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYT-- 600
           LLS AIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNPCNR+N+QNE+IY+NNYKYT  
Sbjct: 541 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNRYNPCNRRNYQNERIYDNNYKYTKK 600

Query: 601 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGY 660
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI+++EAP+EVHYESLGT++EIYG 
Sbjct: 601 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVISAKEAPLEVHYESLGTYYEIYGQ 660

Query: 661 YLIVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYG 702
           YLIV+SIKK+IL IYIRTTVGHISLYREIEEAIQGFC+A SYG
Sbjct: 661 YLIVRSIKKEILYIYIRTTVGHISLYREIEEAIQGFCQACSYG 681

[Close]

BLAST of Tan0003386 vs. ExPASy Swiss-Prot
Match: Q49L07 (DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus OX=71271 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 1315.4 bits (3403), Expect = 0.0e+00
Identity = 641/704 (91.05%), Postives = 662/704 (94.03%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISAWAKKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIAN+LDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANILDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRG FEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLR+IIDYSLVE
Sbjct: 181 RLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEE P GNEWEDRK+GRRKDFLVRR+ELAKHF+RTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEERPTGNEWEDRKIGRRKDFLVRRMELAKHFLRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSL LHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLPLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKY--T 600
           LLS AIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNP NR+N+QNE+ Y+NNYKY   
Sbjct: 541 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICTNRYNPWNRRNYQNERTYDNNYKYRKK 600

Query: 601 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGY 660
           KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASRE PIE+HYESLGT+HEIYG+
Sbjct: 601 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRIIASREVPIEIHYESLGTYHEIYGH 660

Query: 661 YLIVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           YLIV+S+KK+I+CIYIRTTVGHISL+REIEEAIQGFCRA S+GT
Sbjct: 661 YLIVRSVKKEIICIYIRTTVGHISLFREIEEAIQGFCRACSFGT 682

[Close]

BLAST of Tan0003386 vs. ExPASy Swiss-Prot
Match: Q0ZJ29 (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera OX=29760 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1312.4 bits (3395), Expect = 0.0e+00
Identity = 641/704 (91.05%), Postives = 664/704 (94.32%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIG VSPQQISAWANK LPNGEI+GEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGSVSPQQISAWANKILPNGEIIGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+K+D KFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKDDPKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPI KKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIEKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQL DLDLR+IIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLDDLDLRIIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGP GNEWEDRK+GRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPTGNEWEDRKIGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLH+CGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQH ASNIGVAKS+IREKEPIVWEILQEVM+GHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHLASNIGVAKSQIREKEPIVWEILQEVMRGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLV KGFNADFDGDQMAVHVPLSLEAQ+EARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVRKGFNADFDGDQMAVHVPLSLEAQSEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYT-- 600
           LLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNR+N+QNE+I +NNY+YT  
Sbjct: 541 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRRNYQNERIDDNNYRYTKE 600

Query: 601 KEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGY 660
           KEPFFCNSYDAIGAYR KRINL SPLWLRW+LDQR+IAS+EAPIEVHYESLGT+HEIYG+
Sbjct: 601 KEPFFCNSYDAIGAYRHKRINLYSPLWLRWQLDQRLIASKEAPIEVHYESLGTYHEIYGH 660

Query: 661 YLIVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           YLIV+S+KK+I CIYIRTTVGHISLYREIEEAIQGFCRA SY T
Sbjct: 661 YLIVRSVKKEIPCIYIRTTVGHISLYREIEEAIQGFCRACSYET 682

[Close]

BLAST of Tan0003386 vs. NCBI nr
Match: YP_009753865.1 (RNA polymerase beta' subunit [Trichosanthes lobata] >QIT05813.1 RNA polymerase beta' subunit [Trichosanthes lobata])

HSP 1 Score: 1389.0 bits (3594), Expect = 0.0e+00
Identity = 680/702 (96.87%), Postives = 680/702 (96.87%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 680

[Close]

BLAST of Tan0003386 vs. NCBI nr
Match: YP_009752572.1 (RNA polymerase beta' subunit [Trichosanthes homophylla] >YP_009753165.1 RNA polymerase beta' subunit [Trichosanthes truncata] >QIT04968.1 RNA polymerase beta' subunit [Trichosanthes homophylla] >QIT05053.1 RNA polymerase beta' subunit [Trichosanthes kirilowii] >QIT06237.1 RNA polymerase beta' subunit [Trichosanthes truncata])

HSP 1 Score: 1382.9 bits (3578), Expect = 0.0e+00
Identity = 677/702 (96.44%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Tan0003386 vs. NCBI nr
Match: QJD26287.1 (RNA polymerase beta' subunit [Trichosanthes kirilowii] >QJD26374.1 RNA polymerase beta' subunit [Trichosanthes kirilowii] >QJD26462.1 RNA polymerase beta' subunit [Trichosanthes kirilowii var. japonica] >QJD26549.1 RNA polymerase beta' subunit [Trichosanthes kirilowii var. japonica] >QJD26636.1 RNA polymerase beta' subunit [Trichosanthes rosthornii])

HSP 1 Score: 1382.5 bits (3577), Expect = 0.0e+00
Identity = 677/702 (96.44%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV---------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Tan0003386 vs. NCBI nr
Match: QIT04041.1 (RNA polymerase beta' subunit [Luffa aegyptiaca] >QKX48464.1 RNA polymerase beta' subunit [Luffa acutangula] >QKX48550.1 RNA polymerase beta' subunit [Luffa aegyptiaca])

HSP 1 Score: 1381.3 bits (3574), Expect = 0.0e+00
Identity = 676/702 (96.30%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKK+ILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKEILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Tan0003386 vs. NCBI nr
Match: PRQ15716.1 (putative DNA-directed RNA polymerase [Rosa chinensis])

HSP 1 Score: 1380.5 bits (3572), Expect = 0.0e+00
Identity = 665/700 (95.00%), Postives = 683/700 (97.57%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 8   MIDRYKHQQLRIGLVSPQQISAWAQKILPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 67

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+K+D +FCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 68  FGPIKSGICACGNYRVIGDEKKDPRFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 127

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCDPDE KLSRPILKGGDPI SYPNFSFARPIAKKPTFL
Sbjct: 128 RLPSYIANLLDKPLKELEGLVYCDPDERKLSRPILKGGDPIGSYPNFSFARPIAKKPTFL 187

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTT GFDTFRNREISTGAGAIREQLADLDLR+IIDYSL+E
Sbjct: 188 RLRGSFEYEIQSWKYSIPLFFTTPGFDTFRNREISTGAGAIREQLADLDLRIIIDYSLLE 247

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEG  GNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 248 WKELGEEGSTGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 307

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 308 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 367

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 368 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 427

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTF+IRGLIRQHFASNIGVAKSKIREKEP+VWEILQEVMQGHPVLLNRAPTL
Sbjct: 428 REIAIELFQTFVIRGLIRQHFASNIGVAKSKIREKEPVVWEILQEVMQGHPVLLNRAPTL 487

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEG AICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 488 HRLGIQAFQPILVEGHAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 547

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NR N +NE+I +NNYKYTKE
Sbjct: 548 LLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPYNRTNSKNERIADNNYKYTKE 607

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKR+NLDSPLWLRWRLDQRVI SRE PIEVHYESLGT HEIYG+Y+
Sbjct: 608 PFFCNSYDAIGAYRQKRVNLDSPLWLRWRLDQRVITSRETPIEVHYESLGTSHEIYGHYV 667

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSY 701
           IV+SIKK++LCIY+RTTVGHISLYREIEEAIQGFCRAYSY
Sbjct: 668 IVRSIKKEVLCIYVRTTVGHISLYREIEEAIQGFCRAYSY 707

[Close]

BLAST of Tan0003386 vs. ExPASy TrEMBL
Match: A0A6H0EV10 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes lobata OX=2613913 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1389.0 bits (3594), Expect = 0.0e+00
Identity = 680/702 (96.87%), Postives = 680/702 (96.87%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 680

[Close]

BLAST of Tan0003386 vs. ExPASy TrEMBL
Match: A0A6H0EWT2 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes truncata OX=685060 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.9 bits (3578), Expect = 0.0e+00
Identity = 677/702 (96.44%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Tan0003386 vs. ExPASy TrEMBL
Match: A0A6H0ESX5 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.9 bits (3578), Expect = 0.0e+00
Identity = 677/702 (96.44%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Tan0003386 vs. ExPASy TrEMBL
Match: A0A6H0ERI2 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes homophylla OX=1144436 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.9 bits (3578), Expect = 0.0e+00
Identity = 677/702 (96.44%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 680

[Close]

BLAST of Tan0003386 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 1382.5 bits (3577), Expect = 0.0e+00
Identity = 677/702 (96.44%), Postives = 679/702 (96.72%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPIAKKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCDV---------------------FSFARPIAKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WKELGEEGPAGNEWEDRKVGRRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNH+NEKIYNNNYKYTKE
Sbjct: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHKNEKIYNNNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL
Sbjct: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRA SYGT
Sbjct: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRACSYGT 681

[Close]

BLAST of Tan0003386 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 1301.6 bits (3367), Expect = 0.0e+00
Identity = 632/702 (90.03%), Postives = 654/702 (93.16%), Query Frame = 0


Query: 1   MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60
           MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI
Sbjct: 1   MIDRYKHQQLRIGLVSPQQISAWATKIIPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERI 60

Query: 61  FGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLK 120
           FGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIRRYQMGYIKL CPVTHVWYLK
Sbjct: 61  FGPIKSGICACGNYRVIGDEKEDPKFCEQCGVEFVDSRIRRYQMGYIKLTCPVTHVWYLK 120

Query: 121 RLPSYIANLLDKPLKELEGLVYCDPDETKLSRPILKGGDPIVSYPNFSFARPIAKKPTFL 180
           RLPSYIANLLDKPLKELEGLVYCD                      FSFARPI KKPTFL
Sbjct: 121 RLPSYIANLLDKPLKELEGLVYCD----------------------FSFARPITKKPTFL 180

Query: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVE 240
           RLRGSFEYEIQSWKYSIPLFFTTQGFD FRNREISTGAGAIREQLADLDLR+II+ SLVE
Sbjct: 181 RLRGSFEYEIQSWKYSIPLFFTTQGFDIFRNREISTGAGAIREQLADLDLRIIIENSLVE 240

Query: 241 WKELGEEGPAGNEWEDRKVGRRKDFLVRRIELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300
           WK+LGEEGP GNEWEDRK+ RRKDFLVRR+ELAKHFIRTNIEPEWMVLCLLPVLPPELRP
Sbjct: 241 WKQLGEEGPTGNEWEDRKIVRRKDFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRP 300

Query: 301 IIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360
           IIQI+GGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDN
Sbjct: 301 IIQIEGGKLMSSDINELYRRVIYRNNTLTDLLTTSRSTPGELVMCQEKLVQEAVDTLLDN 360

Query: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420
           GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP
Sbjct: 361 GIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLP 420

Query: 421 REIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTL 480
           REIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTL
Sbjct: 421 REIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEILQEVMQGHPVLLNRAPTL 480

Query: 481 HRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540
           HRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN
Sbjct: 481 HRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMN 540

Query: 541 LLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPCNRKNHQNEKIYNNNYKYTKE 600
           LLS AIGDPISVPTQDMLIGLYVLTSG RRGICANRYNPCNRKN+QNE+IY  NYKYTKE
Sbjct: 541 LLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANRYNPCNRKNYQNERIYETNYKYTKE 600

Query: 601 PFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYL 660
           PFFCNSYDAIGAYRQK+INLDSPLWLRW+LDQRVIASRE PIEVHYES G +HEIY +YL
Sbjct: 601 PFFCNSYDAIGAYRQKKINLDSPLWLRWQLDQRVIASREVPIEVHYESFGNYHEIYAHYL 660

Query: 661 IVKSIKKKILCIYIRTTVGHISLYREIEEAIQGFCRAYSYGT 703
           IV+S+KK+  CIYIRTTVGHIS YREIEEAIQGF +A SY T
Sbjct: 661 IVRSVKKENFCIYIRTTVGHISFYREIEEAIQGFSQACSYDT 680

[Close]

BLAST of Tan0003386 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 131.7 bits (330), Expect = 2.3e-30
Identity = 102/381 (26.77%), Postives = 170/381 (44.62%), Query Frame = 0


Query: 217 GAGAIREQLADLDLRLIIDYSLVEWK-ELGEEGPAGNEWEDRKVGRRKDFLVRRIELAK- 276
           G GA + +L    +++I +Y +   K +  ++ P   E +      R   +++RI  A  
Sbjct: 171 GCGAQQPKLTIEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADC 230

Query: 277 ---HFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDL 336
               F      P+WM+L +LP+ PP +RP + +D       D+      +I  N  L   
Sbjct: 231 QLLGFNPKFARPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENL--K 290

Query: 337 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFR 396
                  P  ++    +L+Q  + T  DN + GQP       +  KS    ++ KEGR R
Sbjct: 291 RQEKNGAPAHIISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIR 350

Query: 397 ETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQH 456
             L+GKRVD+S R+VI   P++++   G+P  IA+ L        +    ++ L+    H
Sbjct: 351 GNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPH 410

Query: 457 FASNIGVAKSKIREKE----------------PIVWEILQEVMQGHPVLLNRAPTLHRLG 516
                  AK  IR+                   + +++ + +  G  VL NR P+LH++ 
Sbjct: 411 PPPGKTGAKYIIRDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMS 470

Query: 517 IQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSS 566
           I   +  ++      L+  V   +NADFDGD+M +HVP S E +AE   LM     ++S 
Sbjct: 471 IMGHRIRIMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSP 530

[Close]

BLAST of Tan0003386 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0


Query: 283 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 342
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 250 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 309

Query: 343 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 402
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 310 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 369

Query: 403 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 462
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 370 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 429

Query: 463 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRA 522
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 430 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 489

Query: 523 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 566
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 490 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 549

[Close]

BLAST of Tan0003386 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-28
Identity = 88/308 (28.57%), Postives = 151/308 (49.03%), Query Frame = 0


Query: 283 PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGEL 342
           PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  +
Sbjct: 260 PENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM 319

Query: 343 VMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYS 402
            +     VQ  V   +++ +RG Q   + H          ++GK GRFR  L GKRV+++
Sbjct: 320 QVWD--TVQIEVARYINSEVRGCQNQPEEH--PLSGILQRLKGKGGRFRANLSGKRVEFT 379

Query: 403 GRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN---- 462
           GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N    
Sbjct: 380 GRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYP 439

Query: 463 -------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRA 522
                  +G  + +I ++  I   + + + +G  VL NR P+LHR+ I   +  ++  R 
Sbjct: 440 DGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQPSLHRMSIMCHRARIMPWRT 499

Query: 523 ICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM 566
           +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Sbjct: 500 LRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDF 559

[Close]

BLAST of Tan0003386 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 87.8 bits (216), Expect = 3.7e-17
Identity = 82/317 (25.87%), Postives = 139/317 (43.85%), Query Frame = 0


Query: 293 VLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQE 352
           V P + RP     G  +M         +VI  NN L +  T         V+ + + +QE
Sbjct: 348 VPPTKFRP-PTTGGDSVMEHPQTVGLNKVIESNNILGNACTNKLDQ--SKVIFRWRNLQE 407

Query: 353 AVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPS 412
           +V+ L D+     Q  RD           ++E KEG FR+ ++GKRV+++ RSVI   P 
Sbjct: 408 SVNVLFDSKTATVQSQRDS-----SGICQLLEKKEGLFRQKMMGKRVNHACRSVISPDPY 467

Query: 413 LSLHRCGLPREIAIEL-------------FQTFLIRGLI----RQHFASNIGVAKSKIRE 472
           ++++  G+P   A++L              +  +I G        H++      K    E
Sbjct: 468 IAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMKLPSTE 527

Query: 473 K--EPIVWEIL-----------------------QEVMQGHPVLLNRAPTLHRLGIQAFQ 532
           K    I  ++L                       + +  G  VL+NR PTLH+  + A +
Sbjct: 528 KARRAIARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHK 587

Query: 533 PILVEG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD 566
             +++G + + LH   C  +NADFDGD+M VH P    ++AEA  ++ ++      + G+
Sbjct: 588 VRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEISRAEAYNIVNANNQYARPSNGE 647

The following BLAST results are available for this feature:

BLAST of Tan0003386 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4VZP2	0.0e+00	96.15	DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE...	[more]
B1A926	0.0e+00	92.17	DNA-directed RNA polymerase subunit beta' OS=Carica papaya OX=3649 GN=rpoC1 PE=3...	[more]
Q68S15	0.0e+00	91.75	DNA-directed RNA polymerase subunit beta' OS=Panax ginseng OX=4054 GN=rpoC1 PE=3...	[more]
Q49L07	0.0e+00	91.05	DNA-directed RNA polymerase subunit beta' OS=Eucalyptus globulus subsp. globulus...	[more]
Q0ZJ29	0.0e+00	91.05	DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera OX=29760 GN=rpoC1 PE...	[more]

BLAST of Tan0003386 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009753865.1	0.0e+00	96.87	RNA polymerase beta' subunit [Trichosanthes lobata] >QIT05813.1 RNA polymerase b...	[more]
YP_009752572.1	0.0e+00	96.44	RNA polymerase beta' subunit [Trichosanthes homophylla] >YP_009753165.1 RNA poly...	[more]
QJD26287.1	0.0e+00	96.44	RNA polymerase beta' subunit [Trichosanthes kirilowii] >QJD26374.1 RNA polymeras...	[more]
QIT04041.1	0.0e+00	96.30	RNA polymerase beta' subunit [Luffa aegyptiaca] >QKX48464.1 RNA polymerase beta'...	[more]
PRQ15716.1	0.0e+00	95.00	putative DNA-directed RNA polymerase [Rosa chinensis]	[more]

BLAST of Tan0003386 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EV10	0.0e+00	96.87	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes lobata OX=2613913 GN=...	[more]
A0A6H0EWT2	0.0e+00	96.44	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes truncata OX=685060 GN...	[more]
A0A6H0ESX5	0.0e+00	96.44	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]
A0A6H0ERI2	0.0e+00	96.44	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes homophylla OX=1144436...	[more]
A0A6M3S6B8	0.0e+00	96.44	DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=...	[more]

BLAST of Tan0003386 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00180.1	0.0e+00	90.03	DNA-directed RNA polymerase family protein	[more]
AT4G35800.1	2.3e-30	26.77	RNA polymerase II large subunit	[more]
AT5G60040.1	2.1e-28	28.57	nuclear RNA polymerase C1	[more]
AT5G60040.2	2.1e-28	28.57	nuclear RNA polymerase C1	[more]
AT3G57660.1	3.7e-17	25.87	nuclear RNA polymerase A1	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 284..565 e-value: 2.9E-156 score: 535.1
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 540..699 e-value: 2.4E-24 score: 88.4
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 451..535 e-value: 1.9E-26 score: 93.3 coord: 395..442 e-value: 4.5E-7 score: 30.2
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 3..136 e-value: 7.5E-15 score: 56.7
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 8..393 e-value: 1.3E-50 score: 172.5
None	No IPR available	GENE3D	1.10.40.90		coord: 424..468 e-value: 4.2E-16 score: 60.8
None	No IPR available	GENE3D	2.40.40.20		coord: 383..536 e-value: 2.9E-46 score: 158.6
None	No IPR available	PANTHER	PTHR19376:SF54	DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'	coord: 5..659
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 5..659
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 7..692
IPR034678	DNA-directed RNA polymerase subunit RpoC1	HAMAP	MF_01323	RNApol_bact_RpoC1	coord: 1..693 score: 26.709686

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003386.1	Tan0003386.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0008270	zinc ion binding