Tan0003316 (gene) Snake gourd v1

Overview


Name	Tan0003316
Type	gene
Organism	Trichosanthes anguina (Snake gourd v1)
Description	60S ribosomal protein L36
Location	LG01: 2054700 .. 2056699 (-)
RNA-Seq Expression	Tan0003316
Synteny	Tan0003316

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCTTTGGAAAAAAACACATTGGGCTTCAACCTCTTTCCTGGGCTGAATTAAAGAAGCCCAATAACATTTACGGAAAAAAGCCCAAAAGATCCTTTAGAGACCAACATCTCGTCAATATCTCCTTATAAAATAAAGCTTCTGAAACCCTAATGCCTAGCTTCGCTCGCCTCCGATCGATCATTTTGTTCTACTCCATCTGAGAAGGTAAGACCTTTCATGTTCTTCTTTCGTTCTTCTTTCTCTTGTACGATAATTGAACATAATATTTTTCCCTAGATTTTGATTCTACGATCTTGAGTTCGTCCTAGAGTATCAACTTTATCTGTGTTTTTTTTTTTAAAAAAAATTTAGTGGCTGTTGCTGTAATCGAAATTTTCTTAGTTGTTTTGCTGGCTAACAATGCGATGCGTCTTGCTGAAGTTCAATTGCTAGAACTCTATAATGTTCTATGTAAATTTACTTCTGTTTTTCCTCGATCAAACAAATAGTTCCCATTACTTGATTTTCGGGTGAAAAGACTAAGTTTTCTGTACTTTTAACTATAGATGAACTTATGATACAAGAGTGTATTTATTTTTTACAGTATAAATGTATCTATTTTTTGAACAGGCAATGGCTCAGAAGCAGCCGAATACTGGTCTCTTCGTGGGGCTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGACCCTCAGATCGTAAAGGAGTGAGTTAATTCTGTGCTTCGTTAATCTAGAGTCGTGTACACTGTGTAATCGTATACTTTATTCTGTGTTTAATTTTTGTTGATTTGATTCTGTGCATCTCTCTTCTTTTGTGTGATTTTAGTTGGTGGATACAACTAGGGTTTGCCTGGTGCAAATGAACCTTGTGGGGGGGGGGGGGGTGATTTAAAAAAATATTTTCAATACTTATCTTTTGTAATAAGAATTCAAGTTATTTATTTTAGAAAAGCTCAAAAGCAAGGGGATAGATCTTGATCATACATTTGGTTGTCAGTGAATTGGAAGTATGAACTGAAACCTGCTTGGTTCGTTATTAGTTTCCTTCAAAGATATTTTAGCTGCCACCTCTTAGAAGTTCTTATCGATGACAATGATTAATGTCTGCTTTTGCCCAATTGGATCGATAATGTTTAAAACTAGCGAAGGAGTCCTCCTTGTGAGGGAGCATATGCATATTATCATTTTGCTTCTCATAACGAAGTCTTACAAATTTCAACTTGTCTTGTTCTTGATTTAGTTGTTGGTAGAAAAGTTATTGACATTAATGATTAATGCGTGCTTGAATTTGATTGATACTATAGAAAAGTAGCAAGAGAGTTCTTTTTGTGAGGAATTTGATCCGGGAAGTTGCTGGCTTTGCGCCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCTAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGGTACTTTTATTAGGCTTTCAATATCTCTTATTATGATTAAAGCTTTACCACATTCACGTTTGACATGTTATCAATGATAATACTTAAATGTAATTTCATTTCTACCACGTAATAATACATGTATCTCTGAATTTCTTTTTGATACAGAGCTGGTGGAGGTGGTGAGAAGAAGAAATGAAACATGTGTGGCGAATTTTGAAGCTTCAAATTTCCATAATGTTAGAGACATGTTTTAGATTGTTATTTTTGTTATCAAGAATGAAATTCAGTGGATTTTTCAACTCTCTGTTAGATGAATTGTGATGGTATTAGAACTTAAATTTTAATCTCTACCAAGTCTTCTTTTTTTAATGAGAACCGTACGGCAATTTGCTTCTCTTTTGATATAATTGCCGTTAGCTTGAAACTTGAAAGGAATGCAGCGTTTTATCAGCCTCTGAGAATGCTTTATTTTGTGGCAGAAAACTGTGAATCGTATACCTATG

mRNA sequence

GTCTTTGGAAAAAAACACATTGGGCTTCAACCTCTTTCCTGGGCTGAATTAAAGAAGCCCAATAACATTTACGGAAAAAAGCCCAAAAGATCCTTTAGAGACCAACATCTCGTCAATATCTCCTTATAAAATAAAGCTTCTGAAACCCTAATGCCTAGCTTCGCTCGCCTCCGATCGATCATTTTGTTCTACTCCATCTGAGAAGGCAATGGCTCAGAAGCAGCCGAATACTGGTCTCTTCGTGGGGCTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGACCCTCAGATCGTAAAGGAAAAAGTAGCAAGAGAGTTCTTTTTGTGAGGAATTTGATCCGGGAAGTTGCTGGCTTTGCGCCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCTAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGTGGTGAGAAGAAGAAATGAAACATGTGTGGCGAATTTTGAAGCTTCAAATTTCCATAATGTTAGAGACATGTTTTAGATTGTTATTTTTGTTATCAAGAATGAAATTCAGTGGATTTTTCAACTCTCTGTTAGATGAATTGTGATGGTATTAGAACTTAAATTTTAATCTCTACCAAGTCTTCTTTTTTTAATGAGAACCGTACGGCAATTTGCTTCTCTTTTGATATAATTGCCGTTAGCTTGAAACTTGAAAGGAATGCAGCGTTTTATCAGCCTCTGAGAATGCTTTATTTTGTGGCAGAAAACTGTGAATCGTATACCTATG

Coding sequence (CDS)

ATGGCTCAGAAGCAGCCGAATACTGGTCTCTTCGTGGGGCTTAACAAAGGGCACATTGTTACAAAGAAAGAGTTGGCCCCGCGACCCTCAGATCGTAAAGGAAAAAGTAGCAAGAGAGTTCTTTTTGTGAGGAATTTGATCCGGGAAGTTGCTGGCTTTGCGCCATATGAGAAGAGAATCACTGAGCTTCTTAAAGTTGGAAAGGACAAGAGAGCACTAAAAGTGGCTAAGAGAAAGTTGGGAACTCACAAGAGAGCTAAGAAGAAGAGAGAGGAGATGTCCAGCGTTCTCCGCAAGATGAGAGCTGGTGGAGGTGGTGAGAAGAAGAAATGA

Protein sequence

MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK

Homology

[Close]

BLAST of Tan0003316 vs. ExPASy Swiss-Prot
Match: Q9M352 (60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.5e-42
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+RNLI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Tan0003316 vs. ExPASy Swiss-Prot
Match: Q9LZ57 (60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-40
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+RNLI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]

BLAST of Tan0003316 vs. ExPASy Swiss-Prot
Match: O80929 (60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 1.2e-39
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

[Close]

BLAST of Tan0003316 vs. ExPASy Swiss-Prot
Match: P52866 (60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-33
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 0


Query: 1  MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
          MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGK+SKR  FVRNLIREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 92
          TELLKVGKDKRALKV + K+G H +  K+ E
Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90

[Close]

BLAST of Tan0003316 vs. ExPASy Swiss-Prot
Match: Q9LRB8 (60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-28
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = 0


Query: 12  VGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 71
           VGLNKGH VTKK   PRPS RKG  S+RV  VR ++REVAG+APYE+R+ ELLKVGKDKR
Sbjct: 6   VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65

Query: 72  ALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGE 108
           ALK+ KRKLGTH R KKKREEM+ VLRKM+A   GE
Sbjct: 66  ALKMCKRKLGTHMRGKKKREEMAGVLRKMQAASKGE 101

[Close]

BLAST of Tan0003316 vs. NCBI nr
Match: XP_022923053.1 (60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923055.1 60S ribosomal protein L36-2-like isoform X2 [Cucurbita moschata] >XP_022923056.1 60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022985002.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985003.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_022985004.1 60S ribosomal protein L36-2-like [Cucurbita maxima] >XP_023552431.1 60S ribosomal protein L36-2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. NCBI nr
Match: KAG6576718.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 648 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 707

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 708 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 757

[Close]

BLAST of Tan0003316 vs. NCBI nr
Match: KAG7014765.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 2   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 61

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 62  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111

[Close]

BLAST of Tan0003316 vs. NCBI nr
Match: XP_038878930.1 (60S ribosomal protein L36-2-like [Benincasa hispida] >XP_038878942.1 60S ribosomal protein L36-2-like [Benincasa hispida] >XP_038878950.1 60S ribosomal protein L36-2-like [Benincasa hispida])

HSP 1 Score: 205.3 bits (521), Expect = 2.7e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGH+VTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHVVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. NCBI nr
Match: KAG7013242.1 (60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 7.9e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 2   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 61

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 62  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111

[Close]

BLAST of Tan0003316 vs. ExPASy TrEMBL
Match: A0A6J1JC29 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111483099 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. ExPASy TrEMBL
Match: A0A6J1E5T2 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430843 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.0e-49
Identity = 109/110 (99.09%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. ExPASy TrEMBL
Match: A0A6J1H2C5 (60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.8e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. ExPASy TrEMBL
Match: A0A6J1K6N3 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111491152 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 3.8e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA KQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. ExPASy TrEMBL
Match: A0A6J1HV53 (60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111467732 PE=3 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.4e-48
Identity = 107/110 (97.27%), Postives = 108/110 (98.18%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           MA K PNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVR+LIREVAGFAPYEKRI
Sbjct: 1   MAPKHPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGGEKKK 110

[Close]

BLAST of Tan0003316 vs. TAIR 10
Match: AT3G53740.2 (Ribosomal protein L36e family protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+RNLI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Tan0003316 vs. TAIR 10
Match: AT3G53740.3 (Ribosomal protein L36e family protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+RNLI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Tan0003316 vs. TAIR 10
Match: AT3G53740.4 (Ribosomal protein L36e family protein )

HSP 1 Score: 173.3 bits (438), Expect = 1.1e-43
Identity = 92/112 (82.14%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 1   MAQKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRI 60
           M   Q  TGLFVGLNKGH+VT++ELAPRP  RKGK+SKR +F+RNLI+EVAG APYEKRI
Sbjct: 1   MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GGGG  EKKK
Sbjct: 61  TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGGGATEKKK 112

[Close]

BLAST of Tan0003316 vs. TAIR 10
Match: AT5G02450.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 166.8 bits (421), Expect = 9.9e-42
Identity = 88/105 (83.81%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VTK+E  PRP++RKGK+SKR +F+RNLI+EVAG APYEKRITELLKVG
Sbjct: 4   TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGGG--EKKK 111
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+GG G  EKKK
Sbjct: 64  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSGGAGASEKKK 108

[Close]

BLAST of Tan0003316 vs. TAIR 10
Match: AT2G37600.1 (Ribosomal protein L36e family protein )

HSP 1 Score: 163.7 bits (413), Expect = 8.4e-41
Identity = 87/105 (82.86%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 8   TGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRNLIREVAGFAPYEKRITELLKVG 67
           TGLFVGLNKGH+VT++ELAPRP+ RKGK+SKR +F+R LIREVAG APYEKRITELLKVG
Sbjct: 8   TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68  KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRAGGG---GEKK 110
           KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMR+ GG    EKK
Sbjct: 68  KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRSLGGAAAAEKK 112

The following BLAST results are available for this feature:

BLAST of Tan0003316 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M352	1.5e-42	82.14	60S ribosomal protein L36-2 OS=Arabidopsis thaliana OX=3702 GN=RPL36B PE=3 SV=1	[more]
Q9LZ57	1.4e-40	83.81	60S ribosomal protein L36-3 OS=Arabidopsis thaliana OX=3702 GN=RPL36C PE=3 SV=1	[more]
O80929	1.2e-39	82.86	60S ribosomal protein L36-1 OS=Arabidopsis thaliana OX=3702 GN=RPL36A PE=3 SV=1	[more]
P52866	3.7e-33	82.42	60S ribosomal protein L36 OS=Daucus carota OX=4039 GN=RPL36 PE=3 SV=2	[more]
Q9LRB8	2.1e-28	71.88	60S ribosomal protein L36 OS=Ulva compressa OX=63659 GN=RL36 PE=3 SV=1	[more]

BLAST of Tan0003316 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923053.1	2.1e-49	99.09	60S ribosomal protein L36-2-like isoform X1 [Cucurbita moschata] >XP_022923054.1...	[more]
KAG6576718.1	2.1e-49	99.09	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7014765.1	2.1e-49	99.09	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_038878930.1	2.7e-49	98.18	60S ribosomal protein L36-2-like [Benincasa hispida] >XP_038878942.1 60S ribosom...	[more]
KAG7013242.1	7.9e-49	98.18	60S ribosomal protein L36-2, partial [Cucurbita argyrosperma subsp. argyrosperma...	[more]

BLAST of Tan0003316 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JC29	1.0e-49	99.09	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111483099 PE=3 SV=1	[more]
A0A6J1E5T2	1.0e-49	99.09	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111430843 PE=3 SV=...	[more]
A0A6J1H2C5	3.8e-49	98.18	60S ribosomal protein L36 OS=Cucurbita moschata OX=3662 GN=LOC111459396 PE=3 SV=...	[more]
A0A6J1K6N3	3.8e-49	98.18	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111491152 PE=3 SV=1	[more]
A0A6J1HV53	1.4e-48	97.27	60S ribosomal protein L36 OS=Cucurbita maxima OX=3661 GN=LOC111467732 PE=3 SV=1	[more]

BLAST of Tan0003316 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53740.2	1.1e-43	82.14	Ribosomal protein L36e family protein	[more]
AT3G53740.3	1.1e-43	82.14	Ribosomal protein L36e family protein	[more]
AT3G53740.4	1.1e-43	82.14	Ribosomal protein L36e family protein	[more]
AT5G02450.1	9.9e-42	83.81	Ribosomal protein L36e family protein	[more]
AT2G37600.1	8.4e-41	82.86	Ribosomal protein L36e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000509	Ribosomal protein L36e	PFAM	PF01158	Ribosomal_L36e	coord: 12..105 e-value: 9.3E-43 score: 144.4
IPR000509	Ribosomal protein L36e	PANTHER	PTHR10114	60S RIBOSOMAL PROTEIN L36	coord: 4..114
IPR000509	Ribosomal protein L36e	PROSITE	PS01190	RIBOSOMAL_L36E	coord: 59..69
IPR038097	Ribosomal protein L36e domain superfamily	GENE3D	1.10.10.1760	60S ribosomal protein L36	coord: 3..109 e-value: 9.5E-45 score: 153.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..114
None	No IPR available	PANTHER	PTHR10114:SF14	60S RIBOSOMAL PROTEIN L36-1-RELATED	coord: 4..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Tan0003316.1	Tan0003316.1	mRNA
Tan0003316.2	Tan0003316.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome