Tan0003290 (gene) Snake gourd v1

Overview
NameTan0003290
Typegene
OrganismTrichosanthes anguina (Snake gourd v1)
DescriptionUnknown protein
LocationLG06: 69325001 .. 69325968 (-)
RNA-Seq ExpressionTan0003290
SyntenyTan0003290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTTCCATCTCGAATCCCTAACTACCCTCGTCCTTACACTTGAAACTGCAGGTCAGTATATAATTATTATAATAATACCTTTCTTTTTTTTTCATTTCTTGATTCTTTACAATTTCTTTTAGGAAATATGCCACAACTCCGTCATGAATTAAAATTGTTCCCAGCAGAAAAAGTGAATCTTGGCCAAGTTTCTGATGAAATATCTTTTGCAATTGATTCAAAAGACTTTAAAAGTATTGTTACTGAACTATCTGTCAACCATAATCATAGAGGTAACACTAACTCTTCTTTACTTAATTAGAAAGATAAAAAGTAAAAGTGGTGTATCTTTCTATAATATTCTCATCTATATTTTACAGTTTCTGTTGCTGTAACGTCTTCAGAAGTCAGGTTCTCTGTTGAATCCGAGGAGAGAGTTTTTAGTAGAGAGGTACGTTCATAAGTAAATTGCACAATCTTGAAATTTCTAATTTTCAAATGGCTTTTTAGAGTCATATTAATTAAATATTATCTATATTAAGTGTTTTTAATTTTTTTTTTTTTTTTTTTTGTTGTAATTGCTTTCATCAGAATAAATGAAAATAAAAATCTTTTTCACTTGTTAAGAATTGAATCTGTTTCTATCTATCTTAGTTTGGATTTTGACCCTTACTTTGAAGAATTGAATCTGGCATAAACATGTCTTCTGTTCATTTATTTGATAAATAAATAATATGTGTAATTGTACATTAATTAAATCAAACTCATGAGTGGTTGGTTTAATGTTGTGCAGGAAGGACAATGTGTAATTGTTGGTGTTGGAGAAGATGAAATTCAATTAAAAATCACTCTCCATCCTTCTACGTTTTTCATTAATATGGCAAATCAAGGGGACATGGTATGGTTTTTGAGGACGAGTGATTCTCGTTGTATAATGAGTGTCGCTTTTCATGATTGTGCTCAATTTTTGGTCTATTTTTCTTAA

mRNA sequence

ATGGTCTTCCATCTCGAATCCCTAACTACCCTCGTCCTTACACTTGAAACTGCAGGAAATATGCCACAACTCCGTCATGAATTAAAATTGTTCCCAGCAGAAAAAGTGAATCTTGGCCAAGTTTCTGATGAAATATCTTTTGCAATTGATTCAAAAGACTTTAAAAGTATTGTTACTGAACTATCTGTCAACCATAATCATAGAGTTTCTGTTGCTGTAACGTCTTCAGAAGTCAGGTTCTCTGTTGAATCCGAGGAGAGAGTTTTTAGTAGAGAGGAAGGACAATGTGTAATTGTTGGTGTTGGAGAAGATGAAATTCAATTAAAAATCACTCTCCATCCTTCTACGTTTTTCATTAATATGGCAAATCAAGGGGACATGGTATGGTTTTTGAGGACGAGTGATTCTCGTTGTATAATGAGTGTCGCTTTTCATGATTGTGCTCAATTTTTGGTCTATTTTTCTTAA

Coding sequence (CDS)

ATGGTCTTCCATCTCGAATCCCTAACTACCCTCGTCCTTACACTTGAAACTGCAGGAAATATGCCACAACTCCGTCATGAATTAAAATTGTTCCCAGCAGAAAAAGTGAATCTTGGCCAAGTTTCTGATGAAATATCTTTTGCAATTGATTCAAAAGACTTTAAAAGTATTGTTACTGAACTATCTGTCAACCATAATCATAGAGTTTCTGTTGCTGTAACGTCTTCAGAAGTCAGGTTCTCTGTTGAATCCGAGGAGAGAGTTTTTAGTAGAGAGGAAGGACAATGTGTAATTGTTGGTGTTGGAGAAGATGAAATTCAATTAAAAATCACTCTCCATCCTTCTACGTTTTTCATTAATATGGCAAATCAAGGGGACATGGTATGGTTTTTGAGGACGAGTGATTCTCGTTGTATAATGAGTGTCGCTTTTCATGATTGTGCTCAATTTTTGGTCTATTTTTCTTAA

Protein sequence

MVFHLESLTTLVLTLETAGNMPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIVTELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGVGEDEIQLKITLHPSTFFINMANQGDMVWFLRTSDSRCIMSVAFHDCAQFLVYFS
Homology
BLAST of Tan0003290 vs. NCBI nr
Match: XP_022145570.1 (uncharacterized protein LOC111014988 [Momordica charantia])

HSP 1 Score: 110.9 bits (276), Expect = 9.8e-21
Identity = 60/156 (38.46%), Postives = 99/156 (63.46%), Query Frame = 0

Query: 1   MVFH-LESLTTLVLTLETAGNMPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIVT 60
           M FH LE+   L+L  E + N+P+ R EL L P+E+ ++G++      +I S +F+SIVT
Sbjct: 88  MTFHLLENQNRLLLRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVT 147

Query: 61  ELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGVGED-EIQLKITLHPSTFF 120
           +LS   NHR+   +T S+V+FSV +EE + ++E GQC+I+      E + + TLHP++FF
Sbjct: 148 KLSAYFNHRICATLTDSQVKFSVANEEIILTKEGGQCLIIAPERGVETKFEFTLHPTSFF 207

Query: 121 INMANQGDMVWFLRTSDSRCIMSVAFHDCAQFLVYF 155
            ++A++   VW  +++DSR I+ + F      L+YF
Sbjct: 208 YDLADKPGGVWLCKSTDSRNIICIPFGLNIHHLMYF 243

BLAST of Tan0003290 vs. NCBI nr
Match: XP_023548334.1 (uncharacterized protein LOC111807002 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 1.7e-20
Identity = 64/159 (40.25%), Postives = 101/159 (63.52%), Query Frame = 0

Query: 1   MVFHL-ESLTTLVLTLETAGN-MPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIV 60
           M  H  E+ + +VL  E++ +   Q+   LKL P+++  LGQ+  +  F+I S+DF+ IV
Sbjct: 88  MTIHFPETTSRMVLQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDIV 147

Query: 61  TELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGV-GEDEIQLKITLHPSTF 120
           T L    N  + V++TSS+V+F   SEER+ ++E G+CVIVG  G+ EI  +I L+P  F
Sbjct: 148 TGLPSFPNDSIFVSLTSSQVKFCCASEERILTKEGGRCVIVGYEGQAEIVFQINLNPKWF 207

Query: 121 FINMANQGDMVWFLRTSDSRCIMSV-AFHDCAQFLVYFS 156
           F N++     +WF +T DSRC++ + AF   AQ+++YFS
Sbjct: 208 FFNLSYGAYRIWFYKTIDSRCVIFIPAFGLNAQYVIYFS 246

BLAST of Tan0003290 vs. NCBI nr
Match: XP_023006010.1 (uncharacterized protein LOC111498887 [Cucurbita maxima])

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 63/159 (39.62%), Postives = 99/159 (62.26%), Query Frame = 0

Query: 1   MVFHL-ESLTTLVLTLETAGNMPQLRHE-LKLFPAEKVNLGQVSDEISFAIDSKDFKSIV 60
           M  H  E+ + +VL  E++ +     H  LKL P+++  LGQ+  +  F+I S+DF+ I+
Sbjct: 88  MTIHFPETTSRMVLQFESSNHTKLKMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDII 147

Query: 61  TELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGV-GEDEIQLKITLHPSTF 120
           T L    N+ + V++TSS V+F   SEER+ ++E G+C I+G  GE EI  +I L+P  F
Sbjct: 148 TGLPSFPNNSIFVSLTSSRVKFCCASEERILTKEGGRCAIIGYEGEAEIVFQINLNPKWF 207

Query: 121 FINMANQGDMVWFLRTSDSRCIMSV-AFHDCAQFLVYFS 156
           F N++     +WF +T DSRC++ V AF   AQ+++YFS
Sbjct: 208 FFNLSYGAYRIWFYKTIDSRCVIFVPAFGLNAQYVIYFS 246

BLAST of Tan0003290 vs. NCBI nr
Match: XP_022958857.1 (uncharacterized protein LOC111460011 [Cucurbita moschata])

HSP 1 Score: 109.0 bits (271), Expect = 3.7e-20
Identity = 63/159 (39.62%), Postives = 101/159 (63.52%), Query Frame = 0

Query: 1   MVFHL-ESLTTLVLTLETAGN-MPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIV 60
           M  H  E+ + +VL  E++ +   Q+   LKL P+++  LGQ+  +  F+I S+DF+ I+
Sbjct: 88  MTIHFPETTSRMVLQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDII 147

Query: 61  TELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGV-GEDEIQLKITLHPSTF 120
           T L    N+ + V++TSS V+F   SEER+ ++E G+CVIVG  G+ EI  +I L+P  F
Sbjct: 148 TGLPSFPNNSIFVSLTSSRVKFCWASEERILTKEGGRCVIVGYEGQAEIVFQINLNPKWF 207

Query: 121 FINMANQGDMVWFLRTSDSRCIMSV-AFHDCAQFLVYFS 156
           F N++     +WF +T DSRC++ + AF   AQ+++YFS
Sbjct: 208 FFNLSYGAYRIWFYKTIDSRCVIFIPAFGLNAQYVIYFS 246

BLAST of Tan0003290 vs. NCBI nr
Match: XP_023000630.1 (uncharacterized protein LOC111494874 [Cucurbita maxima])

HSP 1 Score: 105.1 bits (261), Expect = 5.4e-19
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = 0

Query: 1   MVFH-LESLTTLVLTLETAGNMPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIVT 60
           M  H LE+   +VL  ET  + PQLRH+  L P ++ ++ ++    S A+DS+D + ++ 
Sbjct: 91  MTIHLLENTNLMVLRFETPNHEPQLRHDFVLLPPQEQSIEEIEYSKSLALDSRDLRQVIK 150

Query: 61  ELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGVGEDEI-QLKITLHPSTFF 120
           EL + H   V V VTSS VRFS+ S E +F +E+G+C I+G   D + + +I L+P  FF
Sbjct: 151 ELPLFHGDSVCVTVTSSRVRFSIASRELIFKKEKGRCEILGHDGDAVTEFRIVLYPMLFF 210

Query: 121 INMANQGDMVWFLR--TSDSRCIMSVAFHDCAQFLVYF 155
           +N+      VWF +  T+    ++   F   AQ+++YF
Sbjct: 211 LNLTYDVQTVWFHKTITNTHDVMIFPVFEIFAQYVIYF 248

BLAST of Tan0003290 vs. ExPASy TrEMBL
Match: A0A6J1CUU8 (uncharacterized protein LOC111014988 OS=Momordica charantia OX=3673 GN=LOC111014988 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.7e-21
Identity = 60/156 (38.46%), Postives = 99/156 (63.46%), Query Frame = 0

Query: 1   MVFH-LESLTTLVLTLETAGNMPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIVT 60
           M FH LE+   L+L  E + N+P+ R EL L P+E+ ++G++      +I S +F+SIVT
Sbjct: 88  MTFHLLENQNRLLLRFENSRNLPRGRRELDLSPSEEEDVGEIDYGNCVSIGSDEFRSIVT 147

Query: 61  ELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGVGED-EIQLKITLHPSTFF 120
           +LS   NHR+   +T S+V+FSV +EE + ++E GQC+I+      E + + TLHP++FF
Sbjct: 148 KLSAYFNHRICATLTDSQVKFSVANEEIILTKEGGQCLIIAPERGVETKFEFTLHPTSFF 207

Query: 121 INMANQGDMVWFLRTSDSRCIMSVAFHDCAQFLVYF 155
            ++A++   VW  +++DSR I+ + F      L+YF
Sbjct: 208 YDLADKPGGVWLCKSTDSRNIICIPFGLNIHHLMYF 243

BLAST of Tan0003290 vs. ExPASy TrEMBL
Match: A0A6J1KZ05 (uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 63/159 (39.62%), Postives = 99/159 (62.26%), Query Frame = 0

Query: 1   MVFHL-ESLTTLVLTLETAGNMPQLRHE-LKLFPAEKVNLGQVSDEISFAIDSKDFKSIV 60
           M  H  E+ + +VL  E++ +     H  LKL P+++  LGQ+  +  F+I S+DF+ I+
Sbjct: 88  MTIHFPETTSRMVLQFESSNHTKLKMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDII 147

Query: 61  TELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGV-GEDEIQLKITLHPSTF 120
           T L    N+ + V++TSS V+F   SEER+ ++E G+C I+G  GE EI  +I L+P  F
Sbjct: 148 TGLPSFPNNSIFVSLTSSRVKFCCASEERILTKEGGRCAIIGYEGEAEIVFQINLNPKWF 207

Query: 121 FINMANQGDMVWFLRTSDSRCIMSV-AFHDCAQFLVYFS 156
           F N++     +WF +T DSRC++ V AF   AQ+++YFS
Sbjct: 208 FFNLSYGAYRIWFYKTIDSRCVIFVPAFGLNAQYVIYFS 246

BLAST of Tan0003290 vs. ExPASy TrEMBL
Match: A0A6J1H2Z8 (uncharacterized protein LOC111460011 OS=Cucurbita moschata OX=3662 GN=LOC111460011 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 63/159 (39.62%), Postives = 101/159 (63.52%), Query Frame = 0

Query: 1   MVFHL-ESLTTLVLTLETAGN-MPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIV 60
           M  H  E+ + +VL  E++ +   Q+   LKL P+++  LGQ+  +  F+I S+DF+ I+
Sbjct: 88  MTIHFPETTSRMVLQFESSNHTRMQMHRVLKLSPSQEEELGQIQHDRFFSIISQDFRDII 147

Query: 61  TELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGV-GEDEIQLKITLHPSTF 120
           T L    N+ + V++TSS V+F   SEER+ ++E G+CVIVG  G+ EI  +I L+P  F
Sbjct: 148 TGLPSFPNNSIFVSLTSSRVKFCWASEERILTKEGGRCVIVGYEGQAEIVFQINLNPKWF 207

Query: 121 FINMANQGDMVWFLRTSDSRCIMSV-AFHDCAQFLVYFS 156
           F N++     +WF +T DSRC++ + AF   AQ+++YFS
Sbjct: 208 FFNLSYGAYRIWFYKTIDSRCVIFIPAFGLNAQYVIYFS 246

BLAST of Tan0003290 vs. ExPASy TrEMBL
Match: A0A6J1KIW5 (uncharacterized protein LOC111494874 OS=Cucurbita maxima OX=3661 GN=LOC111494874 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 2.6e-19
Identity = 57/158 (36.08%), Postives = 92/158 (58.23%), Query Frame = 0

Query: 1   MVFH-LESLTTLVLTLETAGNMPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIVT 60
           M  H LE+   +VL  ET  + PQLRH+  L P ++ ++ ++    S A+DS+D + ++ 
Sbjct: 91  MTIHLLENTNLMVLRFETPNHEPQLRHDFVLLPPQEQSIEEIEYSKSLALDSRDLRQVIK 150

Query: 61  ELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGVGEDEI-QLKITLHPSTFF 120
           EL + H   V V VTSS VRFS+ S E +F +E+G+C I+G   D + + +I L+P  FF
Sbjct: 151 ELPLFHGDSVCVTVTSSRVRFSIASRELIFKKEKGRCEILGHDGDAVTEFRIVLYPMLFF 210

Query: 121 INMANQGDMVWFLR--TSDSRCIMSVAFHDCAQFLVYF 155
           +N+      VWF +  T+    ++   F   AQ+++YF
Sbjct: 211 LNLTYDVQTVWFHKTITNTHDVMIFPVFEIFAQYVIYF 248

BLAST of Tan0003290 vs. ExPASy TrEMBL
Match: A0A6J1DM64 (uncharacterized protein LOC111022279 OS=Momordica charantia OX=3673 GN=LOC111022279 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 2.1e-16
Identity = 54/160 (33.75%), Postives = 92/160 (57.50%), Query Frame = 0

Query: 1   MVFHLE-SLTTLVLTLETAGNMPQLRHELKLFPAEKVNLGQVSDEISFAIDSKDFKSIVT 60
           M  H + +   ++L  E+      L+ +L L  ++  +LG V  E  F+I S DF+ I+ 
Sbjct: 88  MTMHFQGNAALMILRFESPSYETYLKRQLTLSSSQVQDLGLVDQEKFFSIHSTDFRRIIR 147

Query: 61  ELSVNHNHRVSVAVTSSEVRFSVESEERVFSREEGQCVIVGV-GEDEIQLKITLHPSTFF 120
           EL++  +  +   +T S+VRF +   E V ++E G CVI G  G  E Q +++L P  FF
Sbjct: 148 ELAIYFHRPIHATLTDSQVRFYIADREIVLTKEGGHCVIEGYQGRFEAQFQVSLRPMLFF 207

Query: 121 INMANQGDMVWFLRTSDSR----CIMSVAFHDCAQFLVYF 155
           IN++ Q + +WF +T++SR    C+ + AF+  AQ+++YF
Sbjct: 208 INLSYQSERIWFSKTTNSRSTVICVPAFAFY--AQYVIYF 245

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
XP_022145570.19.8e-2138.46uncharacterized protein LOC111014988 [Momordica charantia][more]
XP_023548334.11.7e-2040.25uncharacterized protein LOC111807002 [Cucurbita pepo subsp. pepo][more]
XP_023006010.13.7e-2039.62uncharacterized protein LOC111498887 [Cucurbita maxima][more]
XP_022958857.13.7e-2039.62uncharacterized protein LOC111460011 [Cucurbita moschata][more]
XP_023000630.15.4e-1936.08uncharacterized protein LOC111494874 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
A0A6J1CUU84.7e-2138.46uncharacterized protein LOC111014988 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A6J1KZ051.8e-2039.62uncharacterized protein LOC111498887 OS=Cucurbita maxima OX=3661 GN=LOC111498887... [more]
A0A6J1H2Z81.8e-2039.62uncharacterized protein LOC111460011 OS=Cucurbita moschata OX=3662 GN=LOC1114600... [more]
A0A6J1KIW52.6e-1936.08uncharacterized protein LOC111494874 OS=Cucurbita maxima OX=3661 GN=LOC111494874... [more]
A0A6J1DM642.1e-1633.75uncharacterized protein LOC111022279 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Snake gourd (anguina) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.70.10.10coord: 2..155
e-value: 5.7E-6
score: 27.8

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Tan0003290.1Tan0003290.1mRNA